RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

30 rows where domain_label = "Archaea" and rna_group = "16S" sorted by organism

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rna_group 1

  • 16S · 30 ✖

domain_label 1

  • Archaea · 30 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.16.a.A.fulgidus 16S d 16 a Archaea   A.fulgidus 16S/a/A.fulgidus no https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.pdf https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.bpseq.txt https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.ss.txt
d.16.a.A.pernix 16S d 16 a Archaea   A.pernix 16S/a/A.pernix.K1 no   https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.bpseq.txt  
d.16.a.A.pernix.K1 16S d 16 a Archaea   A.pernix.K1 16S/a/A.pernix.K1 no https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.pdf https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.bpseq.txt https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.ss.txt
a.16.a.Archaeal.sp.FFSB1 16S a 16 a Archaea   Archaeal.sp.FFSB1 16S/a/Archaeal.sp.FFSB1 no https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB1/a.16.a.Archaeal.sp.FFSB1.pdf https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB1/a.16.a.Archaeal.sp.FFSB1.bpseq.txt https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB1/a.16.a.Archaeal.sp.FFSB1.ss.txt
a.16.a.Archaeal.sp.FFSB5 16S a 16 a Archaea   Archaeal.sp.FFSB5 16S/a/Archaeal.sp.FFSB5 no https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB5/a.16.a.Archaeal.sp.FFSB5.pdf https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB5/a.16.a.Archaeal.sp.FFSB5.bpseq.txt https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB5/a.16.a.Archaeal.sp.FFSB5.ss.txt
a.16.a.Archaeal.sp.FFSB6 16S a 16 a Archaea   Archaeal.sp.FFSB6 16S/a/Archaeal.sp.FFSB6 no https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB6/a.16.a.Archaeal.sp.FFSB6.pdf https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB6/a.16.a.Archaeal.sp.FFSB6.bpseq.txt https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB6/a.16.a.Archaeal.sp.FFSB6.ss.txt
d.16.a.H.marismortui.rrnA 16S d 16 a Archaea   H.marismortui.rrnA 16S/a/H.marismortui.rrnA no https://staging.crw2.org/data/16S/a/H.marismortui.rrnA/d.16.a.H.marismortui.rrnA.pdf https://staging.crw2.org/data/16S/a/H.marismortui.rrnA/d.16.a.H.marismortui.rrnA.bpseq.txt https://staging.crw2.org/data/16S/a/H.marismortui.rrnA/d.16.a.H.marismortui.rrnA.ss.txt
d.16.a.H.marismortui.rrnB 16S d 16 a Archaea   H.marismortui.rrnB 16S/a/H.marismortui.rrnB no https://staging.crw2.org/data/16S/a/H.marismortui.rrnB/d.16.a.H.marismortui.rrnB.pdf https://staging.crw2.org/data/16S/a/H.marismortui.rrnB/d.16.a.H.marismortui.rrnB.bpseq.txt https://staging.crw2.org/data/16S/a/H.marismortui.rrnB/d.16.a.H.marismortui.rrnB.ss.txt
d.16.a.H.volcanii 16S d 16 a Archaea   H.volcanii 16S/a/H.volcanii no https://staging.crw2.org/data/16S/a/H.volcanii/d.16.a.H.volcanii.pdf https://staging.crw2.org/data/16S/a/H.volcanii/d.16.a.H.volcanii.bpseq.txt https://staging.crw2.org/data/16S/a/H.volcanii/d.16.a.H.volcanii.ss.txt
d.16.a.Halobacterium.sp 16S d 16 a Archaea   Halobacterium.sp 16S/a/Halobacterium.sp no https://staging.crw2.org/data/16S/a/Halobacterium.sp/d.16.a.Halobacterium.sp.pdf https://staging.crw2.org/data/16S/a/Halobacterium.sp/d.16.a.Halobacterium.sp.bpseq.txt https://staging.crw2.org/data/16S/a/Halobacterium.sp/d.16.a.Halobacterium.sp.ss.txt
d.16.a.M.formicicum 16S d 16 a Archaea   M.formicicum 16S/a/M.formicicum no https://staging.crw2.org/data/16S/a/M.formicicum/d.16.a.M.formicicum.pdf https://staging.crw2.org/data/16S/a/M.formicicum/d.16.a.M.formicicum.bpseq.txt https://staging.crw2.org/data/16S/a/M.formicicum/d.16.a.M.formicicum.ss.txt
d.16.a.M.hungatei 16S d 16 a Archaea   M.hungatei 16S/a/M.hungatei no https://staging.crw2.org/data/16S/a/M.hungatei/d.16.a.M.hungatei.pdf https://staging.crw2.org/data/16S/a/M.hungatei/d.16.a.M.hungatei.bpseq.txt https://staging.crw2.org/data/16S/a/M.hungatei/d.16.a.M.hungatei.ss.txt
d.16.a.M.jannaschii 16S d 16 a Archaea   M.jannaschii 16S/a/M.jannaschii no https://staging.crw2.org/data/16S/a/M.jannaschii/d.16.a.M.jannaschii.pdf https://staging.crw2.org/data/16S/a/M.jannaschii/d.16.a.M.jannaschii.bpseq.txt https://staging.crw2.org/data/16S/a/M.jannaschii/d.16.a.M.jannaschii.ss.txt
d.16.a.M.thermautotrophicus.1 16S d 16 a Archaea   M.thermautotrophicus.1 16S/a/M.thermautotrophicus.1 no https://staging.crw2.org/data/16S/a/M.thermautotrophicus.1/d.16.a.M.thermautotrophicus.1.pdf https://staging.crw2.org/data/16S/a/M.thermautotrophicus.1/d.16.a.M.thermautotrophicus.1.bpseq.txt https://staging.crw2.org/data/16S/a/M.thermautotrophicus.1/d.16.a.M.thermautotrophicus.1.ss.txt
d.16.a.M.thermautotrophicus.2 16S d 16 a Archaea   M.thermautotrophicus.2 16S/a/M.thermautotrophicus.2 no https://staging.crw2.org/data/16S/a/M.thermautotrophicus.2/d.16.a.M.thermautotrophicus.2.pdf https://staging.crw2.org/data/16S/a/M.thermautotrophicus.2/d.16.a.M.thermautotrophicus.2.bpseq.txt https://staging.crw2.org/data/16S/a/M.thermautotrophicus.2/d.16.a.M.thermautotrophicus.2.ss.txt
d.16.a.M.vannielii 16S d 16 a Archaea   M.vannielii 16S/a/M.vannielii no https://staging.crw2.org/data/16S/a/M.vannielii/d.16.a.M.vannielii.pdf https://staging.crw2.org/data/16S/a/M.vannielii/d.16.a.M.vannielii.bpseq.txt https://staging.crw2.org/data/16S/a/M.vannielii/d.16.a.M.vannielii.ss.txt
d.16.a.N.bangense 16S d 16 a Archaea   N.bangense 16S/a/N.bangense no https://staging.crw2.org/data/16S/a/N.bangense/d.16.a.N.bangense.pdf https://staging.crw2.org/data/16S/a/N.bangense/d.16.a.N.bangense.bpseq.txt https://staging.crw2.org/data/16S/a/N.bangense/d.16.a.N.bangense.ss.txt
d.16.a.N.equitans 16S d 16 a Archaea   N.equitans 16S/a/N.equitans no https://staging.crw2.org/data/16S/a/N.equitans/d.16.a.N.equitans.pdf https://staging.crw2.org/data/16S/a/N.equitans/d.16.a.N.equitans.bpseq.txt https://staging.crw2.org/data/16S/a/N.equitans/d.16.a.N.equitans.ss.txt
d.16.a.N.innermongoliae 16S d 16 a Archaea   N.innermongoliae 16S/a/N.innermongoliae no https://staging.crw2.org/data/16S/a/N.innermongoliae/d.16.a.N.innermongoliae.pdf https://staging.crw2.org/data/16S/a/N.innermongoliae/d.16.a.N.innermongoliae.bpseq.txt https://staging.crw2.org/data/16S/a/N.innermongoliae/d.16.a.N.innermongoliae.ss.txt
d.16.a.P.abyssi 16S d 16 a Archaea   P.abyssi 16S/a/P.abyssi no https://staging.crw2.org/data/16S/a/P.abyssi/d.16.a.P.abyssi.pdf https://staging.crw2.org/data/16S/a/P.abyssi/d.16.a.P.abyssi.bpseq.txt https://staging.crw2.org/data/16S/a/P.abyssi/d.16.a.P.abyssi.ss.txt
d.16.a.P.furiosus 16S d 16 a Archaea   P.furiosus 16S/a/P.furiosus no https://staging.crw2.org/data/16S/a/P.furiosus/d.16.a.P.furiosus.pdf https://staging.crw2.org/data/16S/a/P.furiosus/d.16.a.P.furiosus.bpseq.txt https://staging.crw2.org/data/16S/a/P.furiosus/d.16.a.P.furiosus.ss.txt
d.16.a.P.horikoshii 16S d 16 a Archaea   P.horikoshii 16S/a/P.horikoshii no https://staging.crw2.org/data/16S/a/P.horikoshii/d.16.a.P.horikoshii.pdf https://staging.crw2.org/data/16S/a/P.horikoshii/d.16.a.P.horikoshii.bpseq.txt https://staging.crw2.org/data/16S/a/P.horikoshii/d.16.a.P.horikoshii.ss.txt
d.16.a.P.occultum 16S d 16 a Archaea   P.occultum 16S/a/P.occultum no https://staging.crw2.org/data/16S/a/P.occultum/d.16.a.P.occultum.pdf https://staging.crw2.org/data/16S/a/P.occultum/d.16.a.P.occultum.bpseq.txt https://staging.crw2.org/data/16S/a/P.occultum/d.16.a.P.occultum.ss.txt
d.16.a.P.torridus 16S d 16 a Archaea   P.torridus 16S/a/P.torridus no https://staging.crw2.org/data/16S/a/P.torridus/d.16.a.P.torridus.pdf https://staging.crw2.org/data/16S/a/P.torridus/d.16.a.P.torridus.bpseq.txt https://staging.crw2.org/data/16S/a/P.torridus/d.16.a.P.torridus.ss.txt
d.16.a.S.acidocaldarius 16S d 16 a Archaea   S.acidocaldarius 16S/a/S.acidocaldarius no https://staging.crw2.org/data/16S/a/S.acidocaldarius/d.16.a.S.acidocaldarius.pdf https://staging.crw2.org/data/16S/a/S.acidocaldarius/d.16.a.S.acidocaldarius.bpseq.txt https://staging.crw2.org/data/16S/a/S.acidocaldarius/d.16.a.S.acidocaldarius.ss.txt
d.16.a.S.solfataricus 16S d 16 a Archaea   S.solfataricus 16S/a/S.solfataricus no https://staging.crw2.org/data/16S/a/S.solfataricus/d.16.a.S.solfataricus.pdf https://staging.crw2.org/data/16S/a/S.solfataricus/d.16.a.S.solfataricus.bpseq.txt https://staging.crw2.org/data/16S/a/S.solfataricus/d.16.a.S.solfataricus.ss.txt
d.16.a.S.solfataricus.2 16S d 16 a Archaea   S.solfataricus.2 16S/a/S.solfataricus.2 no https://staging.crw2.org/data/16S/a/S.solfataricus.2/d.16.a.S.solfataricus.2.pdf https://staging.crw2.org/data/16S/a/S.solfataricus.2/d.16.a.S.solfataricus.2.bpseq.txt https://staging.crw2.org/data/16S/a/S.solfataricus.2/d.16.a.S.solfataricus.2.ss.txt
d.16.a.T.acidophilum 16S d 16 a Archaea   T.acidophilum 16S/a/T.acidophilum no https://staging.crw2.org/data/16S/a/T.acidophilum/d.16.a.T.acidophilum.pdf https://staging.crw2.org/data/16S/a/T.acidophilum/d.16.a.T.acidophilum.bpseq.txt https://staging.crw2.org/data/16S/a/T.acidophilum/d.16.a.T.acidophilum.ss.txt
d.16.a.T.celer 16S d 16 a Archaea   T.celer 16S/a/T.celer no https://staging.crw2.org/data/16S/a/T.celer/d.16.a.T.celer.pdf https://staging.crw2.org/data/16S/a/T.celer/d.16.a.T.celer.bpseq.txt https://staging.crw2.org/data/16S/a/T.celer/d.16.a.T.celer.ss.txt
d.16.a.T.tenax 16S d 16 a Archaea   T.tenax 16S/a/T.tenax no https://staging.crw2.org/data/16S/a/T.tenax/d.16.a.T.tenax.pdf https://staging.crw2.org/data/16S/a/T.tenax/d.16.a.T.tenax.bpseq.txt https://staging.crw2.org/data/16S/a/T.tenax/d.16.a.T.tenax.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);