RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

792 rows where rna_group = "16S" sorted by organism

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Suggested facets: diagram_code, domain_code, folder_mismatch

domain_label 6

rna_group 1

  • 16S · 792 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.16.b.A.aeolicus 16S d 16 b Bacteria   A.aeolicus 16S/b/A.aeolicus no https://staging.crw2.org/data/16S/b/A.aeolicus/d.16.b.A.aeolicus.pdf https://staging.crw2.org/data/16S/b/A.aeolicus/d.16.b.A.aeolicus.bpseq.txt https://staging.crw2.org/data/16S/b/A.aeolicus/d.16.b.A.aeolicus.ss.txt
d.16.e.A.ambigua 16S d 16 e Eukarya   A.ambigua 16S/e/A.ambigua no https://staging.crw2.org/data/16S/e/A.ambigua/d.16.e.A.ambigua.pdf https://staging.crw2.org/data/16S/e/A.ambigua/d.16.e.A.ambigua.bpseq.txt https://staging.crw2.org/data/16S/e/A.ambigua/d.16.e.A.ambigua.ss.txt
d.16.m.A.americana 16S d 16 m Mitochondria   A.americana 16S/m/A.americana no https://staging.crw2.org/data/16S/m/A.americana/d.16.m.A.americana.pdf https://staging.crw2.org/data/16S/m/A.americana/d.16.m.A.americana.bpseq.txt https://staging.crw2.org/data/16S/m/A.americana/d.16.m.A.americana.ss.txt
b.16.e.A.australis 16S b 16 e Eukarya   A.australis 16S/e/A.australis no https://staging.crw2.org/data/16S/e/A.australis/b.16.e.A.australis.pdf https://staging.crw2.org/data/16S/e/A.australis/b.16.e.A.australis.bpseq.txt https://staging.crw2.org/data/16S/e/A.australis/b.16.e.A.australis.ss.txt
d.16.e.A.baicalensis 16S d 16 e Eukarya   A.baicalensis 16S/e/A.baicalensis no https://staging.crw2.org/data/16S/e/A.baicalensis/d.16.e.A.baicalensis.pdf https://staging.crw2.org/data/16S/e/A.baicalensis/d.16.e.A.baicalensis.bpseq.txt https://staging.crw2.org/data/16S/e/A.baicalensis/d.16.e.A.baicalensis.ss.txt
d.16.e.A.bongranii 16S d 16 e Eukarya   A.bongranii 16S/e/A.bongranii no https://staging.crw2.org/data/16S/e/A.bongranii/d.16.e.A.bongranii.pdf https://staging.crw2.org/data/16S/e/A.bongranii/d.16.e.A.bongranii.bpseq.txt https://staging.crw2.org/data/16S/e/A.bongranii/d.16.e.A.bongranii.ss.txt
d.16.e.A.bracteata 16S d 16 e Eukarya   A.bracteata 16S/e/A.bracteata no https://staging.crw2.org/data/16S/e/A.bracteata/d.16.e.A.bracteata.pdf https://staging.crw2.org/data/16S/e/A.bracteata/d.16.e.A.bracteata.bpseq.txt https://staging.crw2.org/data/16S/e/A.bracteata/d.16.e.A.bracteata.ss.txt
b.16.m.A.caerulea 16S b 16 m Mitochondria   A.caerulea 16S/m/A.caerulea no https://staging.crw2.org/data/16S/m/A.caerulea/b.16.m.A.caerulea.pdf https://staging.crw2.org/data/16S/m/A.caerulea/b.16.m.A.caerulea.bpseq.txt https://staging.crw2.org/data/16S/m/A.caerulea/b.16.m.A.caerulea.ss.txt
d.16.m.A.cahirinus 16S d 16 m Mitochondria   A.cahirinus 16S/m/A.cahirinus no https://staging.crw2.org/data/16S/m/A.cahirinus/d.16.m.A.cahirinus.pdf https://staging.crw2.org/data/16S/m/A.cahirinus/d.16.m.A.cahirinus.bpseq.txt https://staging.crw2.org/data/16S/m/A.cahirinus/d.16.m.A.cahirinus.ss.txt
d.16.b.A.calcoaceticus 16S d 16 b Bacteria   A.calcoaceticus 16S/b/A.calcoaceticus no https://staging.crw2.org/data/16S/b/A.calcoaceticus/d.16.b.A.calcoaceticus.pdf https://staging.crw2.org/data/16S/b/A.calcoaceticus/d.16.b.A.calcoaceticus.bpseq.txt https://staging.crw2.org/data/16S/b/A.calcoaceticus/d.16.b.A.calcoaceticus.ss.txt
d.16.e.A.capitellata 16S d 16 e Eukarya   A.capitellata 16S/e/A.capitellata no https://staging.crw2.org/data/16S/e/A.capitellata/d.16.e.A.capitellata.pdf https://staging.crw2.org/data/16S/e/A.capitellata/d.16.e.A.capitellata.bpseq.txt https://staging.crw2.org/data/16S/e/A.capitellata/d.16.e.A.capitellata.ss.txt
d.16.b.A.capsulatum 16S d 16 b Bacteria   A.capsulatum 16S/b/A.capsulatum no https://staging.crw2.org/data/16S/b/A.capsulatum/d.16.b.A.capsulatum.pdf https://staging.crw2.org/data/16S/b/A.capsulatum/d.16.b.A.capsulatum.bpseq.txt https://staging.crw2.org/data/16S/b/A.capsulatum/d.16.b.A.capsulatum.ss.txt
d.16.e.A.castellanii 16S d 16 e Eukarya   A.castellanii 16S/e/A.castellanii no https://staging.crw2.org/data/16S/e/A.castellanii/d.16.e.A.castellanii.pdf https://staging.crw2.org/data/16S/e/A.castellanii/d.16.e.A.castellanii.bpseq.txt https://staging.crw2.org/data/16S/e/A.castellanii/d.16.e.A.castellanii.ss.txt
b.16.m.A.castellanii 16S b 16 m Mitochondria   A.castellanii 16S/m/A.castellanii no https://staging.crw2.org/data/16S/m/A.castellanii/b.16.m.A.castellanii.pdf https://staging.crw2.org/data/16S/m/A.castellanii/b.16.m.A.castellanii.bpseq.txt https://staging.crw2.org/data/16S/m/A.castellanii/b.16.m.A.castellanii.ss.txt
d.16.b.A.caulinodans 16S d 16 b Bacteria   A.caulinodans 16S/b/A.caulinodans no https://staging.crw2.org/data/16S/b/A.caulinodans/d.16.b.A.caulinodans.pdf https://staging.crw2.org/data/16S/b/A.caulinodans/d.16.b.A.caulinodans.bpseq.txt https://staging.crw2.org/data/16S/b/A.caulinodans/d.16.b.A.caulinodans.ss.txt
d.16.e.A.connecticus 16S d 16 e Eukarya   A.connecticus 16S/e/A.connecticus no https://staging.crw2.org/data/16S/e/A.connecticus/d.16.e.A.connecticus.pdf https://staging.crw2.org/data/16S/e/A.connecticus/d.16.e.A.connecticus.bpseq.txt https://staging.crw2.org/data/16S/e/A.connecticus/d.16.e.A.connecticus.ss.txt
d.16.e.A.corymbifera.1 16S d 16 e Eukarya   A.corymbifera.1 16S/e/A.corymbifera.1 no https://staging.crw2.org/data/16S/e/A.corymbifera.1/d.16.e.A.corymbifera.1.pdf https://staging.crw2.org/data/16S/e/A.corymbifera.1/d.16.e.A.corymbifera.1.bpseq.txt https://staging.crw2.org/data/16S/e/A.corymbifera.1/d.16.e.A.corymbifera.1.ss.txt
d.16.e.A.corymbifera.2 16S d 16 e Eukarya   A.corymbifera.2 16S/e/A.corymbifera.2 no https://staging.crw2.org/data/16S/e/A.corymbifera.2/d.16.e.A.corymbifera.2.pdf https://staging.crw2.org/data/16S/e/A.corymbifera.2/d.16.e.A.corymbifera.2.bpseq.txt https://staging.crw2.org/data/16S/e/A.corymbifera.2/d.16.e.A.corymbifera.2.ss.txt
d.16.e.A.dasyae 16S d 16 e Eukarya   A.dasyae 16S/e/A.dasyae no https://staging.crw2.org/data/16S/e/A.dasyae/d.16.e.A.dasyae.pdf https://staging.crw2.org/data/16S/e/A.dasyae/d.16.e.A.dasyae.bpseq.txt https://staging.crw2.org/data/16S/e/A.dasyae/d.16.e.A.dasyae.ss.txt
d.16.e.A.ferocious 16S d 16 e Eukarya   A.ferocious 16S/e/A.ferocious no https://staging.crw2.org/data/16S/e/A.ferocious/d.16.e.A.ferocious.pdf https://staging.crw2.org/data/16S/e/A.ferocious/d.16.e.A.ferocious.bpseq.txt https://staging.crw2.org/data/16S/e/A.ferocious/d.16.e.A.ferocious.ss.txt
d.16.e.A.flavus 16S d 16 e Eukarya   A.flavus 16S/e/A.flavus no https://staging.crw2.org/data/16S/e/A.flavus/d.16.e.A.flavus.pdf https://staging.crw2.org/data/16S/e/A.flavus/d.16.e.A.flavus.bpseq.txt https://staging.crw2.org/data/16S/e/A.flavus/d.16.e.A.flavus.ss.txt
b.16.m.A.fornasini 16S b 16 m Mitochondria   A.fornasini 16S/m/A.fornasini no https://staging.crw2.org/data/16S/m/A.fornasini/b.16.m.A.fornasini.pdf https://staging.crw2.org/data/16S/m/A.fornasini/b.16.m.A.fornasini.bpseq.txt https://staging.crw2.org/data/16S/m/A.fornasini/b.16.m.A.fornasini.ss.txt
b.16.m.A.franciscana 16S b 16 m Mitochondria   A.franciscana 16S/m/A.franciscana no https://staging.crw2.org/data/16S/m/A.franciscana/b.16.m.A.franciscana.pdf https://staging.crw2.org/data/16S/m/A.franciscana/b.16.m.A.franciscana.bpseq.txt https://staging.crw2.org/data/16S/m/A.franciscana/b.16.m.A.franciscana.ss.txt
d.16.m.A.fulgens 16S d 16 m Mitochondria   A.fulgens 16S/m/A.fulgens no https://staging.crw2.org/data/16S/m/A.fulgens/d.16.m.A.fulgens.pdf https://staging.crw2.org/data/16S/m/A.fulgens/d.16.m.A.fulgens.bpseq.txt https://staging.crw2.org/data/16S/m/A.fulgens/d.16.m.A.fulgens.ss.txt
d.16.a.A.fulgidus 16S d 16 a Archaea   A.fulgidus 16S/a/A.fulgidus no https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.pdf https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.bpseq.txt https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.ss.txt
d.16.e.A.fundyense 16S d 16 e Eukarya   A.fundyense 16S/e/A.fundyense no https://staging.crw2.org/data/16S/e/A.fundyense/d.16.e.A.fundyense.pdf https://staging.crw2.org/data/16S/e/A.fundyense/d.16.e.A.fundyense.bpseq.txt https://staging.crw2.org/data/16S/e/A.fundyense/d.16.e.A.fundyense.ss.txt
b.16.m.A.gambiae 16S b 16 m Mitochondria   A.gambiae 16S/m/A.gambiae no https://staging.crw2.org/data/16S/m/A.gambiae/b.16.m.A.gambiae.pdf https://staging.crw2.org/data/16S/m/A.gambiae/b.16.m.A.gambiae.bpseq.txt https://staging.crw2.org/data/16S/m/A.gambiae/b.16.m.A.gambiae.ss.txt
d.16.b.A.globiformis 16S d 16 b Bacteria   A.globiformis 16S/b/A.globiformis no https://staging.crw2.org/data/16S/b/A.globiformis/d.16.b.A.globiformis.pdf https://staging.crw2.org/data/16S/b/A.globiformis/d.16.b.A.globiformis.bpseq.txt https://staging.crw2.org/data/16S/b/A.globiformis/d.16.b.A.globiformis.ss.txt
d.16.e.A.hermannii 16S d 16 e Eukarya   A.hermannii 16S/e/A.hermannii no https://staging.crw2.org/data/16S/e/A.hermannii/d.16.e.A.hermannii.pdf https://staging.crw2.org/data/16S/e/A.hermannii/d.16.e.A.hermannii.bpseq.txt https://staging.crw2.org/data/16S/e/A.hermannii/d.16.e.A.hermannii.ss.txt
b.16.m.A.hottentotus 16S b 16 m Mitochondria   A.hottentotus 16S/m/A.hottentotus no https://staging.crw2.org/data/16S/m/A.hottentotus/b.16.m.A.hottentotus.pdf https://staging.crw2.org/data/16S/m/A.hottentotus/b.16.m.A.hottentotus.bpseq.txt https://staging.crw2.org/data/16S/m/A.hottentotus/b.16.m.A.hottentotus.ss.txt
d.16.b.A.hydrophila 16S d 16 b Bacteria   A.hydrophila 16S/b/A.hydrophila no https://staging.crw2.org/data/16S/b/A.hydrophila/d.16.b.A.hydrophila.pdf https://staging.crw2.org/data/16S/b/A.hydrophila/d.16.b.A.hydrophila.bpseq.txt https://staging.crw2.org/data/16S/b/A.hydrophila/d.16.b.A.hydrophila.ss.txt
d.16.e.A.invadans 16S d 16 e Eukarya   A.invadans 16S/e/A.invadans no https://staging.crw2.org/data/16S/e/A.invadans/d.16.e.A.invadans.pdf https://staging.crw2.org/data/16S/e/A.invadans/d.16.e.A.invadans.bpseq.txt https://staging.crw2.org/data/16S/e/A.invadans/d.16.e.A.invadans.ss.txt
d.16.b.A.israelii 16S d 16 b Bacteria   A.israelii 16S/b/A.israelii no https://staging.crw2.org/data/16S/b/A.israelii/d.16.b.A.israelii.pdf https://staging.crw2.org/data/16S/b/A.israelii/d.16.b.A.israelii.bpseq.txt https://staging.crw2.org/data/16S/b/A.israelii/d.16.b.A.israelii.ss.txt
d.16.e.A.kariana 16S d 16 e Eukarya   A.kariana 16S/e/A.kariana no https://staging.crw2.org/data/16S/e/A.kariana/d.16.e.A.kariana.pdf https://staging.crw2.org/data/16S/e/A.kariana/d.16.e.A.kariana.bpseq.txt https://staging.crw2.org/data/16S/e/A.kariana/d.16.e.A.kariana.ss.txt
d.16.e.A.khaliulini 16S d 16 e Eukarya   A.khaliulini 16S/e/A.khaliulini no https://staging.crw2.org/data/16S/e/A.khaliulini/d.16.e.A.khaliulini.pdf https://staging.crw2.org/data/16S/e/A.khaliulini/d.16.e.A.khaliulini.bpseq.txt https://staging.crw2.org/data/16S/e/A.khaliulini/d.16.e.A.khaliulini.ss.txt
d.16.e.A.leptoticha 16S d 16 e Eukarya   A.leptoticha 16S/e/A.leptoticha no https://staging.crw2.org/data/16S/e/A.leptoticha/d.16.e.A.leptoticha.pdf https://staging.crw2.org/data/16S/e/A.leptoticha/d.16.e.A.leptoticha.bpseq.txt https://staging.crw2.org/data/16S/e/A.leptoticha/d.16.e.A.leptoticha.ss.txt
d.16.c.A.longa 16S d 16 c Chloroplast   A.longa 16S/c/A.longa no https://staging.crw2.org/data/16S/c/A.longa/d.16.c.A.longa.pdf https://staging.crw2.org/data/16S/c/A.longa/d.16.c.A.longa.bpseq.txt https://staging.crw2.org/data/16S/c/A.longa/d.16.c.A.longa.ss.txt
d.16.e.A.macrogynus 16S d 16 e Eukarya   A.macrogynus 16S/e/A.macrogynus no https://staging.crw2.org/data/16S/e/A.macrogynus/d.16.e.A.macrogynus.pdf https://staging.crw2.org/data/16S/e/A.macrogynus/d.16.e.A.macrogynus.bpseq.txt https://staging.crw2.org/data/16S/e/A.macrogynus/d.16.e.A.macrogynus.ss.txt
d.16.e.A.majus 16S d 16 e Eukarya   A.majus 16S/e/A.majus no https://staging.crw2.org/data/16S/e/A.majus/d.16.e.A.majus.pdf https://staging.crw2.org/data/16S/e/A.majus/d.16.e.A.majus.bpseq.txt https://staging.crw2.org/data/16S/e/A.majus/d.16.e.A.majus.ss.txt
b.16.m.A.mellifera 16S b 16 m Mitochondria   A.mellifera 16S/m/A.mellifera no https://staging.crw2.org/data/16S/m/A.mellifera/b.16.m.A.mellifera.pdf https://staging.crw2.org/data/16S/m/A.mellifera/b.16.m.A.mellifera.bpseq.txt https://staging.crw2.org/data/16S/m/A.mellifera/b.16.m.A.mellifera.ss.txt
d.16.e.A.michaelis 16S d 16 e Eukarya   A.michaelis 16S/e/A.michaelis no https://staging.crw2.org/data/16S/e/A.michaelis/d.16.e.A.michaelis.pdf https://staging.crw2.org/data/16S/e/A.michaelis/d.16.e.A.michaelis.bpseq.txt https://staging.crw2.org/data/16S/e/A.michaelis/d.16.e.A.michaelis.ss.txt
b.16.m.A.mississippiensis 16S b 16 m Mitochondria   A.mississippiensis 16S/m/A.mississippiensis no https://staging.crw2.org/data/16S/m/A.mississippiensis/b.16.m.A.mississippiensis.pdf https://staging.crw2.org/data/16S/m/A.mississippiensis/b.16.m.A.mississippiensis.bpseq.txt https://staging.crw2.org/data/16S/m/A.mississippiensis/b.16.m.A.mississippiensis.ss.txt
b.16.m.A.pectinifera 16S b 16 m Mitochondria   A.pectinifera 16S/m/A.pectinifera no https://staging.crw2.org/data/16S/m/A.pectinifera/b.16.m.A.pectinifera.pdf https://staging.crw2.org/data/16S/m/A.pectinifera/b.16.m.A.pectinifera.bpseq.txt https://staging.crw2.org/data/16S/m/A.pectinifera/b.16.m.A.pectinifera.ss.txt
d.16.e.A.penaei 16S d 16 e Eukarya   A.penaei 16S/e/A.penaei no https://staging.crw2.org/data/16S/e/A.penaei/d.16.e.A.penaei.pdf https://staging.crw2.org/data/16S/e/A.penaei/d.16.e.A.penaei.bpseq.txt https://staging.crw2.org/data/16S/e/A.penaei/d.16.e.A.penaei.ss.txt
d.16.a.A.pernix 16S d 16 a Archaea   A.pernix 16S/a/A.pernix.K1 no   https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.bpseq.txt  
d.16.a.A.pernix.K1 16S d 16 a Archaea   A.pernix.K1 16S/a/A.pernix.K1 no https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.pdf https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.bpseq.txt https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.ss.txt
b.16.m.A.platyrhynchos 16S b 16 m Mitochondria   A.platyrhynchos 16S/m/A.platyrhynchos no https://staging.crw2.org/data/16S/m/A.platyrhynchos/b.16.m.A.platyrhynchos.pdf https://staging.crw2.org/data/16S/m/A.platyrhynchos/b.16.m.A.platyrhynchos.bpseq.txt https://staging.crw2.org/data/16S/m/A.platyrhynchos/b.16.m.A.platyrhynchos.ss.txt
d.16.e.A.plicata 16S d 16 e Eukarya   A.plicata 16S/e/A.plicata no https://staging.crw2.org/data/16S/e/A.plicata/d.16.e.A.plicata.pdf https://staging.crw2.org/data/16S/e/A.plicata/d.16.e.A.plicata.bpseq.txt https://staging.crw2.org/data/16S/e/A.plicata/d.16.e.A.plicata.ss.txt
d.16.b.A.pyrophilus 16S d 16 b Bacteria   A.pyrophilus 16S/b/A.pyrophilus no https://staging.crw2.org/data/16S/b/A.pyrophilus/d.16.b.A.pyrophilus.pdf https://staging.crw2.org/data/16S/b/A.pyrophilus/d.16.b.A.pyrophilus.bpseq.txt https://staging.crw2.org/data/16S/b/A.pyrophilus/d.16.b.A.pyrophilus.ss.txt
b.16.m.A.quadrimaculatus 16S b 16 m Mitochondria   A.quadrimaculatus 16S/m/A.quadrimaculatus no https://staging.crw2.org/data/16S/m/A.quadrimaculatus/b.16.m.A.quadrimaculatus.pdf https://staging.crw2.org/data/16S/m/A.quadrimaculatus/b.16.m.A.quadrimaculatus.bpseq.txt https://staging.crw2.org/data/16S/m/A.quadrimaculatus/b.16.m.A.quadrimaculatus.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);