RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

110 rows where domain_label = "Archaea" sorted by organism

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rna_group 3

domain_label 1

  • Archaea · 110 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.16.a.A.fulgidus 16S d 16 a Archaea   A.fulgidus 16S/a/A.fulgidus no https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.pdf https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.bpseq.txt https://staging.crw2.org/data/16S/a/A.fulgidus/d.16.a.A.fulgidus.ss.txt
b.23.a.A.fulgidus 23S b 23 a Archaea   A.fulgidus 23S/a/A.fulgidus no   https://staging.crw2.org/data/23S/a/A.fulgidus/b.23.a.A.fulgidus.bpseq.txt  
b.233.a.A.fulgidus 23S b 233 a Archaea   A.fulgidus 23S/a/A.fulgidus no   https://staging.crw2.org/data/23S/a/A.fulgidus/b.233.a.A.fulgidus.bpseq.txt https://staging.crw2.org/data/23S/a/A.fulgidus/b.233.a.A.fulgidus.ss.txt
b.235.a.A.fulgidus 23S b 235 a Archaea   A.fulgidus 23S/a/A.fulgidus no https://staging.crw2.org/data/23S/a/A.fulgidus/b.235.a.A.fulgidus.pdf https://staging.crw2.org/data/23S/a/A.fulgidus/b.235.a.A.fulgidus.bpseq.txt https://staging.crw2.org/data/23S/a/A.fulgidus/b.235.a.A.fulgidus.ss.txt
d.5.a.A.fulgidus 5S d 5 a Archaea   A.fulgidus 5S/a/A.fulgidus no https://staging.crw2.org/data/5S/a/A.fulgidus/d.5.a.A.fulgidus.pdf https://staging.crw2.org/data/5S/a/A.fulgidus/d.5.a.A.fulgidus.bpseq.txt https://staging.crw2.org/data/5S/a/A.fulgidus/d.5.a.A.fulgidus.ss.txt
d.16.a.A.pernix 16S d 16 a Archaea   A.pernix 16S/a/A.pernix.K1 no   https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.bpseq.txt  
d.5.a.A.pernix 5S d 5 a Archaea   A.pernix 5S/a/A.pernix no https://staging.crw2.org/data/5S/a/A.pernix/d.5.a.A.pernix.pdf https://staging.crw2.org/data/5S/a/A.pernix/d.5.a.A.pernix.bpseq.txt https://staging.crw2.org/data/5S/a/A.pernix/d.5.a.A.pernix.ss.txt
d.16.a.A.pernix.K1 16S d 16 a Archaea   A.pernix.K1 16S/a/A.pernix.K1 no https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.pdf https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.bpseq.txt https://staging.crw2.org/data/16S/a/A.pernix.K1/d.16.a.A.pernix.K1.ss.txt
a.16.a.Archaeal.sp.FFSB1 16S a 16 a Archaea   Archaeal.sp.FFSB1 16S/a/Archaeal.sp.FFSB1 no https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB1/a.16.a.Archaeal.sp.FFSB1.pdf https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB1/a.16.a.Archaeal.sp.FFSB1.bpseq.txt https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB1/a.16.a.Archaeal.sp.FFSB1.ss.txt
a.16.a.Archaeal.sp.FFSB5 16S a 16 a Archaea   Archaeal.sp.FFSB5 16S/a/Archaeal.sp.FFSB5 no https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB5/a.16.a.Archaeal.sp.FFSB5.pdf https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB5/a.16.a.Archaeal.sp.FFSB5.bpseq.txt https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB5/a.16.a.Archaeal.sp.FFSB5.ss.txt
a.16.a.Archaeal.sp.FFSB6 16S a 16 a Archaea   Archaeal.sp.FFSB6 16S/a/Archaeal.sp.FFSB6 no https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB6/a.16.a.Archaeal.sp.FFSB6.pdf https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB6/a.16.a.Archaeal.sp.FFSB6.bpseq.txt https://staging.crw2.org/data/16S/a/Archaeal.sp.FFSB6/a.16.a.Archaeal.sp.FFSB6.ss.txt
b.23.a.D.mobilis 23S b 23 a Archaea   D.mobilis 23S/a/D.mobilis no   https://staging.crw2.org/data/23S/a/D.mobilis/b.23.a.D.mobilis.bpseq.txt  
b.233.a.D.mobilis 23S b 233 a Archaea   D.mobilis 23S/a/D.mobilis no https://staging.crw2.org/data/23S/a/D.mobilis/b.233.a.D.mobilis.pdf https://staging.crw2.org/data/23S/a/D.mobilis/b.233.a.D.mobilis.bpseq.txt https://staging.crw2.org/data/23S/a/D.mobilis/b.233.a.D.mobilis.ss.txt
b.235.a.D.mobilis 23S b 235 a Archaea   D.mobilis 23S/a/D.mobilis no   https://staging.crw2.org/data/23S/a/D.mobilis/b.235.a.D.mobilis.bpseq.txt https://staging.crw2.org/data/23S/a/D.mobilis/b.235.a.D.mobilis.ss.txt
d.5.a.D.mobilis 5S d 5 a Archaea   D.mobilis 5S/a/D.mobilis no https://staging.crw2.org/data/5S/a/D.mobilis/d.5.a.D.mobilis.pdf https://staging.crw2.org/data/5S/a/D.mobilis/d.5.a.D.mobilis.bpseq.txt https://staging.crw2.org/data/5S/a/D.mobilis/d.5.a.D.mobilis.ss.txt
b.23.a.H.halobium 23S b 23 a Archaea   H.halobium 23S/a/H.halobium no   https://staging.crw2.org/data/23S/a/H.halobium/b.23.a.H.halobium.bpseq.txt  
b.233.a.H.halobium 23S b 233 a Archaea   H.halobium 23S/a/H.halobium no https://staging.crw2.org/data/23S/a/H.halobium/b.233.a.H.halobium.pdf https://staging.crw2.org/data/23S/a/H.halobium/b.233.a.H.halobium.bpseq.txt https://staging.crw2.org/data/23S/a/H.halobium/b.233.a.H.halobium.ss.txt
b.235.a.H.halobium 23S b 235 a Archaea   H.halobium 23S/a/H.halobium no   https://staging.crw2.org/data/23S/a/H.halobium/b.235.a.H.halobium.bpseq.txt https://staging.crw2.org/data/23S/a/H.halobium/b.235.a.H.halobium.ss.txt
d.5.a.H.marismortui 5S d 5 a Archaea   H.marismortui 5S/a/H.marismortui no https://staging.crw2.org/data/5S/a/H.marismortui/d.5.a.H.marismortui.pdf https://staging.crw2.org/data/5S/a/H.marismortui/d.5.a.H.marismortui.bpseq.txt https://staging.crw2.org/data/5S/a/H.marismortui/d.5.a.H.marismortui.ss.txt
d.23.a.H.marismortui.1 23S d 23 a Archaea   H.marismortui.1 23S/a/H.marismortui.1 no   https://staging.crw2.org/data/23S/a/H.marismortui.1/d.23.a.H.marismortui.1.bpseq.txt  
d.233.a.H.marismortui.1 23S d 233 a Archaea   H.marismortui.1 23S/a/H.marismortui.1 no https://staging.crw2.org/data/23S/a/H.marismortui.1/d.233.a.H.marismortui.1.pdf https://staging.crw2.org/data/23S/a/H.marismortui.1/d.233.a.H.marismortui.1.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.1/d.233.a.H.marismortui.1.ss.txt
d.235.a.H.marismortui.1 23S d 235 a Archaea   H.marismortui.1 23S/a/H.marismortui.1 no https://staging.crw2.org/data/23S/a/H.marismortui.1/d.235.a.H.marismortui.1.pdf https://staging.crw2.org/data/23S/a/H.marismortui.1/d.235.a.H.marismortui.1.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.1/d.235.a.H.marismortui.1.ss.txt
d.23.a.H.marismortui.2 23S d 23 a Archaea   H.marismortui.2 23S/a/H.marismortui.2 no   https://staging.crw2.org/data/23S/a/H.marismortui.2/d.23.a.H.marismortui.2.bpseq.txt  
d.233.a.H.marismortui.2 23S d 233 a Archaea   H.marismortui.2 23S/a/H.marismortui.2 no https://staging.crw2.org/data/23S/a/H.marismortui.2/d.233.a.H.marismortui.2.pdf https://staging.crw2.org/data/23S/a/H.marismortui.2/d.233.a.H.marismortui.2.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.2/d.233.a.H.marismortui.2.ss.txt
d.235.a.H.marismortui.2 23S d 235 a Archaea   H.marismortui.2 23S/a/H.marismortui.2 no https://staging.crw2.org/data/23S/a/H.marismortui.2/d.235.a.H.marismortui.2.pdf https://staging.crw2.org/data/23S/a/H.marismortui.2/d.235.a.H.marismortui.2.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.2/d.235.a.H.marismortui.2.ss.txt
d.23.a.H.marismortui.3 23S d 23 a Archaea   H.marismortui.3 23S/a/H.marismortui.3 no   https://staging.crw2.org/data/23S/a/H.marismortui.3/d.23.a.H.marismortui.3.bpseq.txt  
d.233.a.H.marismortui.3 23S d 233 a Archaea   H.marismortui.3 23S/a/H.marismortui.3 no https://staging.crw2.org/data/23S/a/H.marismortui.3/d.233.a.H.marismortui.3.pdf https://staging.crw2.org/data/23S/a/H.marismortui.3/d.233.a.H.marismortui.3.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.3/d.233.a.H.marismortui.3.ss.txt
d.235.a.H.marismortui.3 23S d 235 a Archaea   H.marismortui.3 23S/a/H.marismortui.3 no https://staging.crw2.org/data/23S/a/H.marismortui.3/d.235.a.H.marismortui.3.pdf https://staging.crw2.org/data/23S/a/H.marismortui.3/d.235.a.H.marismortui.3.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.3/d.235.a.H.marismortui.3.ss.txt
d.16.a.H.marismortui.rrnA 16S d 16 a Archaea   H.marismortui.rrnA 16S/a/H.marismortui.rrnA no https://staging.crw2.org/data/16S/a/H.marismortui.rrnA/d.16.a.H.marismortui.rrnA.pdf https://staging.crw2.org/data/16S/a/H.marismortui.rrnA/d.16.a.H.marismortui.rrnA.bpseq.txt https://staging.crw2.org/data/16S/a/H.marismortui.rrnA/d.16.a.H.marismortui.rrnA.ss.txt
d.16.a.H.marismortui.rrnB 16S d 16 a Archaea   H.marismortui.rrnB 16S/a/H.marismortui.rrnB no https://staging.crw2.org/data/16S/a/H.marismortui.rrnB/d.16.a.H.marismortui.rrnB.pdf https://staging.crw2.org/data/16S/a/H.marismortui.rrnB/d.16.a.H.marismortui.rrnB.bpseq.txt https://staging.crw2.org/data/16S/a/H.marismortui.rrnB/d.16.a.H.marismortui.rrnB.ss.txt
d.5.a.H.mediterranei.1 5S d 5 a Archaea   H.mediterranei.1 5S/a/H.mediterranei.1 no https://staging.crw2.org/data/5S/a/H.mediterranei.1/d.5.a.H.mediterranei.1.pdf https://staging.crw2.org/data/5S/a/H.mediterranei.1/d.5.a.H.mediterranei.1.bpseq.txt https://staging.crw2.org/data/5S/a/H.mediterranei.1/d.5.a.H.mediterranei.1.ss.txt
b.23.a.H.morrhuae 23S b 23 a Archaea   H.morrhuae 23S/a/H.morrhuae no   https://staging.crw2.org/data/23S/a/H.morrhuae/b.23.a.H.morrhuae.bpseq.txt  
b.233.a.H.morrhuae 23S b 233 a Archaea   H.morrhuae 23S/a/H.morrhuae no   https://staging.crw2.org/data/23S/a/H.morrhuae/b.233.a.H.morrhuae.bpseq.txt https://staging.crw2.org/data/23S/a/H.morrhuae/b.233.a.H.morrhuae.ss.txt
b.235.a.H.morrhuae 23S b 235 a Archaea   H.morrhuae 23S/a/H.morrhuae no https://staging.crw2.org/data/23S/a/H.morrhuae/b.235.a.H.morrhuae.pdf https://staging.crw2.org/data/23S/a/H.morrhuae/b.235.a.H.morrhuae.bpseq.txt https://staging.crw2.org/data/23S/a/H.morrhuae/b.235.a.H.morrhuae.ss.txt
d.5.a.H.morrhuae.1 5S d 5 a Archaea   H.morrhuae.1 5S/a/H.morrhuae.1 no https://staging.crw2.org/data/5S/a/H.morrhuae.1/d.5.a.H.morrhuae.1.pdf https://staging.crw2.org/data/5S/a/H.morrhuae.1/d.5.a.H.morrhuae.1.bpseq.txt https://staging.crw2.org/data/5S/a/H.morrhuae.1/d.5.a.H.morrhuae.1.ss.txt
d.5.a.H.morrhuae.2 5S d 5 a Archaea   H.morrhuae.2 5S/a/H.morrhuae.2 no https://staging.crw2.org/data/5S/a/H.morrhuae.2/d.5.a.H.morrhuae.2.pdf https://staging.crw2.org/data/5S/a/H.morrhuae.2/d.5.a.H.morrhuae.2.bpseq.txt https://staging.crw2.org/data/5S/a/H.morrhuae.2/d.5.a.H.morrhuae.2.ss.txt
d.5.a.H.saccharovorum 5S d 5 a Archaea   H.saccharovorum 5S/a/H.saccharovorum no https://staging.crw2.org/data/5S/a/H.saccharovorum/d.5.a.H.saccharovorum.pdf https://staging.crw2.org/data/5S/a/H.saccharovorum/d.5.a.H.saccharovorum.bpseq.txt https://staging.crw2.org/data/5S/a/H.saccharovorum/d.5.a.H.saccharovorum.ss.txt
d.5.a.H.salinarum.1 5S d 5 a Archaea   H.salinarum.1 5S/a/H.salinarum.1 no https://staging.crw2.org/data/5S/a/H.salinarum.1/d.5.a.H.salinarum.1.pdf https://staging.crw2.org/data/5S/a/H.salinarum.1/d.5.a.H.salinarum.1.bpseq.txt https://staging.crw2.org/data/5S/a/H.salinarum.1/d.5.a.H.salinarum.1.ss.txt
d.5.a.H.salinarum.2 5S d 5 a Archaea   H.salinarum.2 5S/a/H.salinarum.2 no https://staging.crw2.org/data/5S/a/H.salinarum.2/d.5.a.H.salinarum.2.pdf https://staging.crw2.org/data/5S/a/H.salinarum.2/d.5.a.H.salinarum.2.bpseq.txt https://staging.crw2.org/data/5S/a/H.salinarum.2/d.5.a.H.salinarum.2.ss.txt
d.16.a.H.volcanii 16S d 16 a Archaea   H.volcanii 16S/a/H.volcanii no https://staging.crw2.org/data/16S/a/H.volcanii/d.16.a.H.volcanii.pdf https://staging.crw2.org/data/16S/a/H.volcanii/d.16.a.H.volcanii.bpseq.txt https://staging.crw2.org/data/16S/a/H.volcanii/d.16.a.H.volcanii.ss.txt
b.23.a.H.volcanii 23S b 23 a Archaea   H.volcanii 23S/a/H.volcanii no   https://staging.crw2.org/data/23S/a/H.volcanii/b.23.a.H.volcanii.bpseq.txt  
b.233.a.H.volcanii 23S b 233 a Archaea   H.volcanii 23S/a/H.volcanii no https://staging.crw2.org/data/23S/a/H.volcanii/b.233.a.H.volcanii.pdf https://staging.crw2.org/data/23S/a/H.volcanii/b.233.a.H.volcanii.bpseq.txt https://staging.crw2.org/data/23S/a/H.volcanii/b.233.a.H.volcanii.ss.txt
b.235.a.H.volcanii 23S b 235 a Archaea   H.volcanii 23S/a/H.volcanii no   https://staging.crw2.org/data/23S/a/H.volcanii/b.235.a.H.volcanii.bpseq.txt https://staging.crw2.org/data/23S/a/H.volcanii/b.235.a.H.volcanii.ss.txt
d.5.a.H.volcanii 5S d 5 a Archaea   H.volcanii 5S/a/H.volcanii no https://staging.crw2.org/data/5S/a/H.volcanii/d.5.a.H.volcanii.pdf https://staging.crw2.org/data/5S/a/H.volcanii/d.5.a.H.volcanii.bpseq.txt https://staging.crw2.org/data/5S/a/H.volcanii/d.5.a.H.volcanii.ss.txt
d.16.a.Halobacterium.sp 16S d 16 a Archaea   Halobacterium.sp 16S/a/Halobacterium.sp no https://staging.crw2.org/data/16S/a/Halobacterium.sp/d.16.a.Halobacterium.sp.pdf https://staging.crw2.org/data/16S/a/Halobacterium.sp/d.16.a.Halobacterium.sp.bpseq.txt https://staging.crw2.org/data/16S/a/Halobacterium.sp/d.16.a.Halobacterium.sp.ss.txt
d.5.a.M.barkeri 5S d 5 a Archaea   M.barkeri 5S/a/M.barkeri no https://staging.crw2.org/data/5S/a/M.barkeri/d.5.a.M.barkeri.pdf https://staging.crw2.org/data/5S/a/M.barkeri/d.5.a.M.barkeri.bpseq.txt https://staging.crw2.org/data/5S/a/M.barkeri/d.5.a.M.barkeri.ss.txt
d.5.a.M.fervidus 5S d 5 a Archaea   M.fervidus 5S/a/M.fervidus no https://staging.crw2.org/data/5S/a/M.fervidus/d.5.a.M.fervidus.pdf https://staging.crw2.org/data/5S/a/M.fervidus/d.5.a.M.fervidus.bpseq.txt https://staging.crw2.org/data/5S/a/M.fervidus/d.5.a.M.fervidus.ss.txt
d.16.a.M.formicicum 16S d 16 a Archaea   M.formicicum 16S/a/M.formicicum no https://staging.crw2.org/data/16S/a/M.formicicum/d.16.a.M.formicicum.pdf https://staging.crw2.org/data/16S/a/M.formicicum/d.16.a.M.formicicum.bpseq.txt https://staging.crw2.org/data/16S/a/M.formicicum/d.16.a.M.formicicum.ss.txt
d.5.a.M.formicicum 5S d 5 a Archaea   M.formicicum 5S/a/M.formicicum no https://staging.crw2.org/data/5S/a/M.formicicum/d.5.a.M.formicicum.pdf https://staging.crw2.org/data/5S/a/M.formicicum/d.5.a.M.formicicum.bpseq.txt https://staging.crw2.org/data/5S/a/M.formicicum/d.5.a.M.formicicum.ss.txt
d.16.a.M.hungatei 16S d 16 a Archaea   M.hungatei 16S/a/M.hungatei no https://staging.crw2.org/data/16S/a/M.hungatei/d.16.a.M.hungatei.pdf https://staging.crw2.org/data/16S/a/M.hungatei/d.16.a.M.hungatei.bpseq.txt https://staging.crw2.org/data/16S/a/M.hungatei/d.16.a.M.hungatei.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);