Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

3 rows where group_code = "T" and tertiary_type = "3°: base triple" sorted by position_1

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tertiary_type 1

  • 3°: base triple · 3 ✖

strength 1

molecule 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 35 740 757 C:G cWW 3°: base triple Strong T 0.2 29.0 1.7 6.5 19.5   0.8 1.1   0.5 0.9 0.2     1.2 37.4 0.9 887 CG,AU,GU,UU CG,AC,UU 49 36 23 0.54 0.49 0.68 1.17 0.38 0.57 0.12 0.73 0.0 0.84
23S 71 1950 1956 G:U cWW 3°: base triple Strong T   0.2 13.0 0.4 44.2 9.8 2.0 2.9 0.8 25.4     0.2     1.1   848 UA,GU,UG,AA,AC,CA GU,UG,AC,CA 31 31 14 0.45 0.68 0.82 1.51 0.14 0.68 0.24 0.46 0.0 0.81
23S 73 2057 2611 G:C cWW 3°: base triple Strong T 40.9 2.6 0.1 54.9 1.1     0.3         0.1         727 GC,CG,AU GC,CG,UA,AU 10 10 9 0.9 0.97 0.98 1.95 0.98 1.0 0.87 0.84 0.0 0.7

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;