Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

21 rows where tertiary_type = "3°: base triple" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, AU, GU, AC, GA, UU, sequences, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

group_code 7

tertiary_type 1

  • 3°: base triple · 21 ✖

strength 1

molecule 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 35 740 757 C:G cWW 3°: base triple Strong T 0.2 29.0 1.7 6.5 19.5   0.8 1.1   0.5 0.9 0.2     1.2 37.4 0.9 887 CG,AU,GU,UU CG,AC,UU 49 36 23 0.54 0.49 0.68 1.17 0.38 0.57 0.12 0.73 0.0 0.84
23S 35 740 757 C:G cWW 3°: base triple Strong 3   28.2   0.2 6.9   1.1 1.1     1.0 0.4     1.9 58.0 1.2 524 CG,GU,UU CG,AA,UU 16 16 10 0.62 0.72 0.88 1.6 0.29 0.36 0.56 0.81 0.01 0.82
23S 35 740 757 C:G cWW 3°: base triple Strong B   52.5     5.0   2.1 0.7     1.8 0.7     3.2 33.7 0.4 282 CG,GU,AA,UC,UU CG,AA,UU 11 14 9 0.72 0.76 0.89 1.65 0.53 0.58 0.64 0.59 0.0 0.86
23S 35 740 757 C:G cWW 3°: base triple Strong A       2.7 56.8                     27.0 13.5 37 AU,GU,UU   3 0 0 0.0 0.0 0.0 0.0 0.03 0.69 0.23 2.0 0.12 0.78
23S 35 740 757 C:G cWW 3°: base triple Strong C   92.0               4.0         1.0 3.0   100 CG,CA,UU CG,UU 2 5 2 0.57 0.38 0.95 1.32 0.92 0.92 1.76 1.49 0.0 0.97
23S 35 740 757 C:G cWW 3°: base triple Strong E         0.5     2.0             0.5 97.1   205 AC,UU AC,UU 2 2 1 0.5 0.67 0.99 1.66 0.0 0.01 1.82 1.83 0.0 0.78
23S 35 740 757 C:G cWW 3°: base triple Strong M 0.8 6.5 5.7 21.7 52.1   0.4 1.5     1.1         9.5 0.8 263 CG,UA,AU,GU,UU CG,UA,GU,AC 31 15 11 0.48 0.29 0.66 0.95 0.35 0.87 0.28 1.08 0.0 0.84
23S 71 1950 1956 G:U cWW 3°: base triple Strong T   0.2 13.0 0.4 44.2 9.8 2.0 2.9 0.8 25.4     0.2     1.1   848 UA,GU,UG,AA,AC,CA GU,UG,AC,CA 31 31 14 0.45 0.68 0.82 1.51 0.14 0.68 0.24 0.46 0.0 0.81
23S 71 1950 1956 G:U cWW 3°: base triple Strong 3     3.4 0.2 58.5 2.8 1.4     32.1     0.5     1.1   436 UA,GU,UG,CA GU,UG,CA 8 9 4 0.47 0.84 0.93 1.77 0.04 0.65 0.65 0.88 0.0 0.69
23S 71 1950 1956 G:U cWW 3°: base triple Strong B     4.6   94.2         0.8     0.4         240 UA,GU UA,GU 2 3 2 0.8 0.79 0.99 1.77 0.05 0.99 1.66 1.63 0.0 0.74
23S 71 1950 1956 G:U cWW 3°: base triple Strong A     9.8   58.5 17.1 14.6                     41 UA,GU,UG,AA GU,UG,AA 2 2 0 0.0 0.77 0.9 1.67 0.1 0.85 0.63 0.62 0.0 1.0
23S 71 1950 1956 G:U cWW 3°: base triple Strong C         98.0     2.0                   101 GU,AC GU,AC 1 1 1 1.0 1.0 1.0 2.0 0.0 0.98 1.86 1.86 0.0 0.98
23S 71 1950 1956 G:U cWW 3°: base triple Strong E       0.6 3.2 3.2       89.0     0.6     3.2   155 GU,UG,CA,UU GU,UG,CA 4 4 2 0.5 0.59 0.95 1.54 0.01 0.07 1.37 1.43 0.0 0.59
23S 71 1950 1956 G:U cWW 3°: base triple Strong M   0.6 30.5 0.6 6.8 22.8 3.5 7.4 2.3 24.1           1.3   311 UA,GU,UG,AA,AC,AG,CA CG,UA,GU,AC 22 21 9 0.42 0.21 0.45 0.67 0.32 0.61 0.37 0.46 0.0 1.0
23S 73 2057 2611 G:C cWW 3°: base triple Strong T 40.9 2.6 0.1 54.9 1.1     0.3         0.1         727 GC,CG,AU GC,CG,UA,AU 10 10 9 0.9 0.97 0.98 1.95 0.98 1.0 0.87 0.84 0.0 0.7
23S 73 2057 2611 G:C cWW 3°: base triple Strong 3 51.7 4.6 0.2 43.0       0.5                   412 GC,CG,AU GC,CG,UA,AU 6 5 6 1.0 0.99 0.99 1.99 0.99 0.99 0.77 0.76 0.0 0.65
23S 73 2057 2611 G:C cWW 3°: base triple Strong B 90.3     8.9       0.8                   236 GC,AU GC,AU 5 4 4 0.89 0.91 0.99 1.91 0.99 0.99 1.55 1.57 0.0 0.72
23S 73 2057 2611 G:C cWW 3°: base triple Strong A   46.3 2.4 51.2                           41 CG,UA,AU CG,UA,AU 1 1 2 1.0 1.0 1.0 2.0 1.0 1.0 0.86 0.86 0.0 1.0
23S 73 2057 2611 G:C cWW 3°: base triple Strong C 100.0                                 53 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.52
23S 73 2057 2611 G:C cWW 3°: base triple Strong E       100.0                           135 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.51
23S 73 2057 2611 G:C cWW 3°: base triple Strong M 11.8     84.7 3.1               0.4         262 GC,AU,GU GC,AU 3 4 3 0.86 0.78 0.97 1.74 0.97 1.0 1.4 1.44 0.0 0.84

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;