Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "No BP" and strength = "Significant" sorted by position_1

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Suggested facets: UA, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

group_code 7

strength 1

  • Significant · 7 ✖

molecule 1

conformation 1

  • No BP · 7 ✖

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 33 688 774 U:G No BP   Significant T     90.9 1.5 0.1 3.6       0.1         3.3 0.3 0.2 886 UA,UG,UC UA,AU 4 14 3 0.33 0.17 0.0 0.17 0.93 0.96 1.84 1.42 0.0 0.85
23S 33 688 774 U:G No BP   Significant 3     89.5     5.3                 5.0 0.2   524 UA,UG,UC   0 7 0 0.0 0.0 0.0 0.0 0.9 0.95 2.0 1.4 0.0 0.83
23S 33 688 774 U:G No BP   Significant B     88.7     9.2                 2.1     282 UA,UG,UC   0 4 0 0.0 0.0 0.0 0.0 0.89 0.98 2.0 1.41 0.0 0.86
23S 33 688 774 U:G No BP   Significant A     100.0                             37 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9
23S 33 688 774 U:G No BP   Significant C     100.0                             100 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97
23S 33 688 774 U:G No BP   Significant E     88.8     1.0                 9.8 0.5   205 UA,UC   0 3 0 0.0 0.0 0.0 0.0 0.89 0.9 2.0 1.42 0.0 0.78
23S 33 688 774 U:G No BP   Significant M     90.1 5.0 0.4 1.5       0.4         1.1 0.8 0.8 262 UA,AU UA,AU 4 7 3 0.55 0.54 0.96 1.5 0.96 0.98 1.56 1.41 0.01 0.83

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;