Base-pair collective (covariation) scores

11 rows where group_code = "M" and strength = "Significant" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov3, WC, WCGU, XCons, YCons, DfDel, Seq

conformation 4

strength 1

  • Significant · 11 ✖

molecule 1

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3591 3591 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant M 10 7 6 0.71 0.5 0.68 1.18 0.68 0.68 -0.51 -0.56 0.02 0.1 233
3654 3654 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant M 6 6 2 0.33 0.26 0.42 0.68 0.29 0.33 -0.57 -0.5 0.03 0.08 233
3990 3990 23S 13 239 258   v4 C:G cWW       Significant M 25 21 9 0.39 0.58 0.74 1.32 0.74 0.81 0.08 -0.01 0.02 0.73 254
4109 4109 23S 18 287 353   v4 G:C cWW       Significant M 1 3 0 0.0 0.11 0.0 0.11 0.47 0.53 -0.33 -0.33 0.0 0.05 254
4837 4837 23S 33 688 774   v4 U:G No BP       Significant M 4 7 3 0.55 0.54 0.96 1.5 0.96 0.98 1.56 1.41 0.01 0.83 262
5334 5334 23S 38 874 903   v4 G:C cWW       Significant M 6 3 2 0.44 0.62 0.74 1.36 0.74 0.86 -0.57 -0.57 0.04 0.14 266
5649 5649 23S 42 1035 1120   v4 U:G cWW       Significant M 9 10 5 0.53 0.31 0.62 0.93 0.42 0.92 -0.54 -0.64 0.01 0.15 276
6244 6244 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant M 16 10 0 0.0 0.12 0.0 0.12 0.44 0.46 -0.83 -0.56 0.01 0.39 276
6937 6937 23S 61 1667 1993   v4 G:U tSH       Significant M 3 5 2 0.5 0.59 0.97 1.56 0.05 0.99 1.57 1.73 0.01 0.88 276
8022 8022 23S 77 2124 2174   v4 G:C cWW       Significant M 2 2 2 1.0 0.33 0.9 1.24 0.9 0.93 -0.38 -0.4 0.0 0.13 309
8547 8547 23S 88 2401 2415   v4 U:G cWW       Significant M 6 9 4 0.53 0.27 0.68 0.95 0.42 0.98 -0.49 -0.53 0.0 0.16 309

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");