Base-pair collective (covariation) scores

77 rows where strength = "Significant" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov3, DfDel

group_code 7

  • 3 11
  • A 11
  • B 11
  • C 11
  • E 11
  • M 11
  • T 11

conformation 4

strength 1

  • Significant · 77 ✖

molecule 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3585 3585 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant T 12 11 6 0.52 0.28 0.94 1.22 0.06 0.06 0.42 0.29 0.01 0.49 719
3586 3586 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant 3 2 2 0 0.0 0.0 0.0 0.0 0.02 0.02 1.9 1.86 0.0 0.64 405
3587 3587 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant B 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.77 252
3588 3588 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant A 1 1 0 0.0 0.0 0.0 0.0 0.17 0.17 1.69 1.5 0.0 0.88 36
3589 3589 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant C 0 2 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.71 0.0 0.79 81
3590 3590 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant E 1 1 0 0.0 0.0 0.0 0.0 0.02 0.02 1.84 1.79 0.0 0.44 117
3591 3591 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant M 10 7 6 0.71 0.5 0.68 1.18 0.68 0.68 -0.51 -0.56 0.02 0.1 233
3648 3648 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant T 23 25 11 0.46 0.35 0.62 0.97 0.45 0.46 -0.16 -0.86 0.12 0.39 740
3649 3649 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant 3 15 11 8 0.61 0.45 0.67 1.12 0.59 0.59 0.89 -0.72 0.19 0.47 411
3650 3650 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant B 11 11 8 0.73 0.49 0.67 1.16 0.67 0.67 0.76 0.15 0.0 0.79 257
3651 3651 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.88 36
3652 3652 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant C 2 8 1 0.2 0.05 0.0 0.05 0.05 0.05 1.57 0.66 0.03 0.9 96
3653 3653 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant E 4 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.04 -0.05 0.45 0.0 118
3654 3654 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant M 6 6 2 0.33 0.26 0.42 0.68 0.29 0.33 -0.57 -0.5 0.03 0.08 233
3984 3984 23S 13 239 258   v4 C:G cWW       Significant T 88 82 33 0.39 0.25 0.42 0.67 0.47 0.72 0.25 -0.19 0.01 0.8 866
3985 3985 23S 13 239 258   v4 C:G cWW       Significant 3 52 42 18 0.38 0.22 0.47 0.69 0.37 0.7 0.71 0.13 0.0 0.81 512
3986 3986 23S 13 239 258   v4 C:G cWW       Significant B 27 21 9 0.38 0.26 0.61 0.87 0.44 0.92 0.67 0.41 0.0 0.84 276
3987 3987 23S 13 239 258   v4 C:G cWW       Significant A 3 3 2 0.67 0.5 0.89 1.39 0.17 0.94 1.28 1.12 0.0 0.88 36
3988 3988 23S 13 239 258   v4 C:G cWW       Significant C 11 19 6 0.4 0.28 0.49 0.77 0.42 0.64 0.48 0.3 0.0 0.97 100
3989 3989 23S 13 239 258   v4 C:G cWW       Significant E 22 18 7 0.35 0.36 0.55 0.91 0.3 0.34 0.84 0.47 0.0 0.76 200
3990 3990 23S 13 239 258   v4 C:G cWW       Significant M 25 21 9 0.39 0.58 0.74 1.32 0.74 0.81 0.08 -0.01 0.02 0.73 254
4103 4103 23S 18 287 353   v4 G:C cWW       Significant T 70 69 26 0.37 0.39 0.49 0.89 0.49 0.59 -0.88 -0.86 0.01 0.52 877
4104 4104 23S 18 287 353   v4 G:C cWW       Significant 3 52 50 19 0.37 0.4 0.5 0.9 0.5 0.62 -0.35 -0.31 0.02 0.71 523
4105 4105 23S 18 287 353   v4 G:C cWW       Significant B 32 27 12 0.41 0.39 0.52 0.91 0.52 0.62 0.08 0.07 0.01 0.83 275
4106 4106 23S 18 287 353   v4 G:C cWW       Significant A 5 4 3 0.67 0.55 0.72 1.27 0.72 0.83 0.21 0.35 0.0 0.88 36
4107 4107 23S 18 287 353   v4 G:C cWW       Significant C 17 16 7 0.42 0.24 0.46 0.7 0.46 0.47 -0.36 -0.25 0.01 0.79 100
4108 4108 23S 18 287 353   v4 G:C cWW       Significant E 15 19 4 0.23 0.16 0.0 0.16 0.41 0.56 -0.32 -0.54 0.06 0.53 212
4109 4109 23S 18 287 353   v4 G:C cWW       Significant M 1 3 0 0.0 0.11 0.0 0.11 0.47 0.53 -0.33 -0.33 0.0 0.05 254
4831 4831 23S 33 688 774   v4 U:G No BP       Significant T 4 14 3 0.33 0.17 0.0 0.17 0.93 0.96 1.84 1.42 0.0 0.85 886
4832 4832 23S 33 688 774   v4 U:G No BP       Significant 3 0 7 0 0.0 0.0 0.0 0.0 0.9 0.95 2.0 1.4 0.0 0.83 524
4833 4833 23S 33 688 774   v4 U:G No BP       Significant B 0 4 0 0.0 0.0 0.0 0.0 0.89 0.98 2.0 1.41 0.0 0.86 282
4834 4834 23S 33 688 774   v4 U:G No BP       Significant A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
4835 4835 23S 33 688 774   v4 U:G No BP       Significant C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
4836 4836 23S 33 688 774   v4 U:G No BP       Significant E 0 3 0 0.0 0.0 0.0 0.0 0.89 0.9 2.0 1.42 0.0 0.78 205
4837 4837 23S 33 688 774   v4 U:G No BP       Significant M 4 7 3 0.55 0.54 0.96 1.5 0.96 0.98 1.56 1.41 0.01 0.83 262
5328 5328 23S 38 874 903   v4 G:C cWW       Significant T 18 22 10 0.5 0.14 0.0 0.14 0.48 0.67 0.13 -0.62 0.01 0.6 859
5329 5329 23S 38 874 903   v4 G:C cWW       Significant 3 9 16 6 0.48 0.09 0.0 0.09 0.37 0.59 1.42 0.2 0.0 0.77 493
5330 5330 23S 38 874 903   v4 G:C cWW       Significant B 6 6 3 0.5 0.26 0.66 0.91 0.66 1.0 1.29 0.66 0.0 0.75 244
5331 5331 23S 38 874 903   v4 G:C cWW       Significant A 0 7 0 0.0 0.05 0.0 0.05 0.41 0.86 1.82 0.61 0.0 0.9 37
5332 5332 23S 38 874 903   v4 G:C cWW       Significant C 3 3 2 0.67 0.33 0.94 1.27 0.92 0.96 1.56 1.67 0.0 0.97 100
5333 5333 23S 38 874 903   v4 G:C cWW       Significant E 3 3 3 1.0 0.15 0.0 0.15 0.03 0.05 1.6 1.33 0.0 0.78 212
5334 5334 23S 38 874 903   v4 G:C cWW       Significant M 6 3 2 0.44 0.62 0.74 1.36 0.74 0.86 -0.57 -0.57 0.04 0.14 266
5643 5643 23S 42 1035 1120   v4 U:G cWW       Significant T 9 13 5 0.46 0.23 0.96 1.19 0.04 0.99 0.49 0.39 0.0 0.6 858
5644 5644 23S 42 1035 1120   v4 U:G cWW       Significant 3 0 1 0 0.0 0.0 0.0 0.0 0.0 0.99 1.93 1.89 0.0 0.76 482
5645 5645 23S 42 1035 1120   v4 U:G cWW       Significant B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.73 239
5646 5646 23S 42 1035 1120   v4 U:G cWW       Significant A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.77 2.0 0.02 0.88 37
5647 5647 23S 42 1035 1120   v4 U:G cWW       Significant C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.99 2.0 1.84 0.0 0.97 100
5648 5648 23S 42 1035 1120   v4 U:G cWW       Significant E 0 1 0 0.0 0.0 0.0 0.0 0.01 0.98 1.9 1.76 0.0 0.78 206
5649 5649 23S 42 1035 1120   v4 U:G cWW       Significant M 9 10 5 0.53 0.31 0.62 0.93 0.42 0.92 -0.54 -0.64 0.01 0.15 276
6238 6238 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant T 26 35 4 0.13 0.59 0.8 1.39 0.66 0.67 -0.81 -0.5 0.2 0.47 844
6239 6239 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant 3 8 22 2 0.13 0.78 0.9 1.68 0.63 0.65 -0.67 0.12 0.33 0.43 468
6240 6240 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant B 7 5 2 0.33 0.85 0.94 1.78 0.63 0.65 0.71 0.81 0.0 0.81 263
6241 6241 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant A 0 6 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.2 1.0 0.0 41
6242 6242 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant C 2 3 2 0.8 0.5 0.98 1.48 0.98 1.0 1.86 1.76 0.0 0.97 100
6243 6243 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant E 1 11 0 0.0 0.0 0.0 0.0 0.6 0.6 -0.3 0.74 0.63 0.04 164
6244 6244 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant M 16 10 0 0.0 0.12 0.0 0.12 0.44 0.46 -0.83 -0.56 0.01 0.39 276
6931 6931 23S 61 1667 1993   v4 G:U tSH       Significant T 4 6 2 0.4 0.5 0.99 1.49 0.02 0.99 1.81 1.87 0.0 0.77 807
6932 6932 23S 61 1667 1993   v4 G:U tSH       Significant 3 1 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.98 0.0 0.68 430
6933 6933 23S 61 1667 1993   v4 G:U tSH       Significant B 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.96 0.0 0.72 236
6934 6934 23S 61 1667 1993   v4 G:U tSH       Significant A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41
6935 6935 23S 61 1667 1993   v4 G:U tSH       Significant C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.98 101
6936 6936 23S 61 1667 1993   v4 G:U tSH       Significant E 1 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.95 2.0 0.0 0.58 153
6937 6937 23S 61 1667 1993   v4 G:U tSH       Significant M 3 5 2 0.5 0.59 0.97 1.56 0.05 0.99 1.57 1.73 0.01 0.88 276
8016 8016 23S 77 2124 2174   v4 G:C cWW       Significant T 3 2 2 0.8 0.29 0.99 1.28 0.99 0.99 0.4 0.41 0.0 0.55 847
8017 8017 23S 77 2124 2174   v4 G:C cWW       Significant 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69 437
8018 8018 23S 77 2124 2174   v4 G:C cWW       Significant B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
8019 8019 23S 77 2124 2174   v4 G:C cWW       Significant A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
8020 8020 23S 77 2124 2174   v4 G:C cWW       Significant C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 2.0 0.0 0.98 101
8021 8021 23S 77 2124 2174   v4 G:C cWW       Significant E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.59 155
8022 8022 23S 77 2124 2174   v4 G:C cWW       Significant M 2 2 2 1.0 0.33 0.9 1.24 0.9 0.93 -0.38 -0.4 0.0 0.13 309
8541 8541 23S 88 2401 2415   v4 U:G cWW       Significant T 30 23 14 0.53 0.13 0.0 0.13 0.3 0.95 -0.33 0.08 0.0 0.56 847
8542 8542 23S 88 2401 2415   v4 U:G cWW       Significant 3 21 10 8 0.52 0.1 0.0 0.1 0.35 0.94 0.7 1.49 0.0 0.69 437
8543 8543 23S 88 2401 2415   v4 U:G cWW       Significant B 4 0 0 0.0 0.0 0.0 0.0 0.07 1.0 1.61 1.95 0.0 0.74 241
8544 8544 23S 88 2401 2415   v4 U:G cWW       Significant A 4 2 1 0.33 0.42 0.83 1.25 0.83 0.95 0.84 1.34 0.0 1.0 41
8545 8545 23S 88 2401 2415   v4 U:G cWW       Significant C 3 4 2 0.57 0.43 0.96 1.39 0.02 0.95 1.73 1.6 0.0 0.98 101
8546 8546 23S 88 2401 2415   v4 U:G cWW       Significant E 13 8 7 0.67 0.27 0.67 0.93 0.67 0.86 0.43 1.08 0.0 0.59 155
8547 8547 23S 88 2401 2415   v4 U:G cWW       Significant M 6 9 4 0.53 0.27 0.68 0.95 0.42 0.98 -0.49 -0.53 0.0 0.16 309

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");