Base-pair collective (covariation) scores

1,348 rows where group_code = "M" sorted by position_1

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conformation 12

strength 5

molecule 2

group_code 1

  • M · 1,348 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3353 3353 23S 1 1 2902   v4 G:C cWW       Strong M 6 9 5 0.67 0.58 0.71 1.29 0.71 0.86 -0.64 -0.71 0.02 0.09 34
3360 3360 23S 1 2 2901   v4 G:C cWW       Strong M 9 7 4 0.5 0.6 0.71 1.31 0.71 0.79 -0.88 -0.77 0.02 0.09 34
3367 3367 23S 1 3 2900   v4 U:A cWW       Strong M 4 6 7 1.0 0.75 0.89 1.64 0.89 0.89 -0.52 -0.49 0.02 0.09 34
3374 3374 23S 1 4 2899   v4 U:A cWW       Strong M 7 5 4 0.67 0.67 0.79 1.45 0.79 0.86 -0.78 -0.68 0.02 0.09 34
3381 3381 23S 1 5 2898   v4 A:U cWW       Strong M 8 7 5 0.67 0.6 0.78 1.38 0.78 0.89 -0.8 -0.71 0.01 0.09 34
3388 3388 23S 1 6 2897   v4 A:U cWW       Strong M 8 6 7 1.0 0.65 0.78 1.43 0.78 0.78 -0.64 -0.47 0.01 0.09 34
3395 3395 23S 1 7 2896   v4 G:C cWW       Strong M 8 5 5 0.77 0.64 0.81 1.46 0.81 0.89 -0.78 -0.62 0.01 0.09 34
3402 3402 23S 1 8 2895   v4 C:G cWW       Weak M 5 4 1 0.22 0.47 0.67 1.14 0.67 0.74 -0.74 -0.53 0.02 0.09 34
7 7 16S 1 9 25   v4 G:C cWW       Strong M 14 18 9 0.56 0.69 0.95 1.65 0.95 0.96 1.3 1.28 0.0 0.57 662
14 14 16S 1 10 24   v4 A:U cWW       Strong M 13 10 3 0.26 0.78 0.96 1.74 0.96 0.98 1.26 1.26 0.0 0.57 663
21 21 16S 1 11 23   v4 G:C cWW       Strong M 15 12 9 0.67 0.26 0.77 1.03 0.77 0.78 0.91 1.45 0.0 0.57 666
28 28 16S 1 12 22   v4 U:G cWW       Strong M 23 18 3 0.15 0.75 0.91 1.66 0.07 0.69 0.97 0.99 0.0 0.57 669
35 35 16S 1 13 21   v4 U:G No BP       Weak M 10 59 2 0.06 0.16 0.0 0.16 0.51 0.9 1.4 0.89 0.0 0.57 669
3409 3409 23S 2 15 525   v4 G:U cWW       Strong M 17 24 14 0.68 0.69 0.83 1.52 0.83 0.92 0.49 -0.03 0.05 0.69 226
3416 3416 23S 2 16 524   v4 C:G cWW       Strong M 12 14 9 0.69 0.81 0.95 1.76 0.95 0.98 0.46 0.22 0.05 0.7 228
42 42 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong M 10 10 6 0.6 0.38 0.98 1.36 0.98 0.99 1.82 1.83 0.0 0.58 672
3423 3423 23S 2 17 523   v4 G:C cWW       Strong M 8 13 4 0.38 0.5 0.69 1.19 0.69 0.92 -0.61 0.35 0.49 0.15 228
49 49 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong M 16 17 10 0.61 0.86 0.99 1.85 0.99 0.99 1.39 1.35 0.0 0.58 675
3430 3430 23S 2 18 522   v4 U:A cWW       Strong M 8 20 8 0.57 0.93 0.96 1.88 0.96 0.96 -0.69 0.21 0.5 0.14 228
56 56 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong M 12 13 5 0.4 0.75 0.98 1.73 0.98 0.98 1.46 1.52 0.0 0.58 676
3437 3437 23S 2 19 521   v4 A:U cWW       Strong M 5 15 6 0.6 0.86 0.93 1.79 0.93 0.95 -0.64 -0.2 0.48 0.14 228
3444 3444 23S 2 20 520   v4 C:G cWW       Strong M 9 11 10 1.0 0.94 0.98 1.92 0.98 1.0 -0.6 -0.61 0.05 0.14 228
3451 3451 23S 2 21 519   v4 A:U cWW       Strong M 9 10 9 0.95 0.63 0.76 1.39 0.76 0.93 -0.58 -0.67 0.05 0.13 228
3458 3458 23S 2 22 518   v4 C:G cWW       Strong M 6 8 3 0.43 0.61 0.73 1.34 0.63 0.95 -0.67 -0.72 0.05 0.13 228
3465 3465 23S 2 23 517   v4 G:C cWW       Strong M 6 7 6 0.92 0.96 0.98 1.93 0.98 0.98 -0.64 -0.68 0.06 0.13 228
3472 3472 23S 2 24 516   v4 G:C cWW       Strong M 3 5 2 0.5 1.0 1.0 2.0 1.0 1.0 -0.45 -0.57 0.06 0.13 228
63 63 16S 3 27 556   v4 G:C cWW       Strong M 34 66 18 0.36 0.71 0.8 1.51 0.8 0.81 0.2 0.04 0.01 0.6 708
70 70 16S 3 28 555   v4 A:U cWW       Strong M 39 68 23 0.43 0.61 0.78 1.39 0.78 0.83 0.36 0.21 0.0 0.61 709
77 77 16S 3 29 554   v4 U:A cWW       Strong M 57 76 20 0.3 0.46 0.71 1.17 0.71 0.77 0.32 0.25 0.0 0.61 708
84 84 16S 3 30 553   v4 U:A cWW       Strong M 39 45 27 0.64 0.93 0.96 1.89 0.96 0.98 0.52 0.58 0.0 0.61 711
3479 3479 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong M 26 8 5 0.29 0.9 0.95 1.85 0.95 0.98 0.02 -0.6 0.64 0.14 229
3486 3486 23S 3 31 474   v4 C:G cWW       Strong M 37 20 14 0.49 0.54 0.67 1.2 0.67 0.67 -0.18 -0.1 0.02 0.7 231
91 91 16S 3 32 552   v4 A:U cWW       Strong M 10 14 7 0.58 0.89 0.98 1.87 0.98 0.98 1.27 1.33 0.0 0.61 712
3493 3493 23S 3 32 473   v4 C:G cWW       Strong M 13 13 7 0.54 0.43 0.91 1.34 0.91 0.93 1.07 0.63 0.02 0.7 232
98 98 16S 3 33 551   v4 A:U cWW       Strong M 8 12 6 0.6 0.94 0.98 1.92 0.98 0.99 0.55 0.62 0.0 0.6 712
105 105 16S 3 34 550   v4 C:G cWW       Strong M 45 42 23 0.53 0.74 0.93 1.66 0.93 0.96 0.76 0.91 0.0 0.61 714
112 112 16S 3 35 549   v4 G:C cWW       Weak M 61 55 16 0.28 0.19 0.0 0.19 0.45 0.9 0.77 1.11 0.0 0.63 733
3500 3500 23S 4 35 445   v4 G:C cWW       Strong M 11 9 7 0.7 0.73 0.98 1.72 0.97 0.98 1.12 0.68 0.08 0.68 233
119 119 16S 3 36 548   v4 C:G cWW       Strong M 41 44 24 0.56 0.84 0.93 1.78 0.93 0.98 0.94 0.91 0.0 0.63 736
3507 3507 23S 4 36 444   v4 G:C cWW       Strong M 10 10 7 0.7 0.86 0.97 1.83 0.97 0.98 0.57 0.2 0.08 0.68 233
126 126 16S 3 37 547   v4 U:A tWS       Weak M 27 15 5 0.24 0.09 0.0 0.09 0.92 0.93 1.48 1.78 0.0 0.63 738
3514 3514 23S 4 37 442   v4 C:G cWW       Strong M 20 16 14 0.78 0.9 0.95 1.85 0.95 0.99 0.27 -0.06 0.09 0.67 233
3521 3521 23S 4 38 441   v4 A:U cWW       Strong M 17 19 15 0.83 0.88 0.94 1.82 0.94 0.98 0.03 -0.24 0.09 0.67 233
133 133 16S 4 39 403   v4 G:C cWW       Weak M 70 60 21 0.32 0.49 0.84 1.33 0.84 0.86 0.76 0.62 0.0 0.64 747
3528 3528 23S 4 39 440   v4 G:C cWW       Strong M 24 33 20 0.7 0.49 0.69 1.19 0.71 0.71 -0.48 -0.62 0.08 0.54 233
140 140 16S 4 40 402   v4 C:G cWW       Strong M 54 53 31 0.58 0.83 0.93 1.76 0.93 0.94 0.5 0.51 0.0 0.64 749
3535 3535 23S 4 40 439   v4 U:A cWW       Strong M 6 7 6 0.92 0.96 0.98 1.94 0.98 1.0 -0.64 -0.64 0.04 0.15 233
147 147 16S 4 41 401   v4 G:C cWW       Strong M 48 48 35 0.73 0.87 0.94 1.81 0.94 0.96 0.47 0.45 0.0 0.65 750
3542 3542 23S 4 41 438   v4 C:G cWW       Strong M 7 5 5 0.83 0.92 0.95 1.87 0.95 1.0 -0.66 -0.62 0.07 0.14 233
154 154 16S 4 42 400   v4 G:C cWW       Strong M 37 42 30 0.76 0.94 0.97 1.91 0.97 0.99 0.1 0.1 0.0 0.65 758
3549 3549 23S 4 42 437   v4 A:U cWW       Strong M 6 5 5 0.91 1.0 1.0 2.0 1.0 1.0 -0.61 -0.55 0.08 0.13 233
161 161 16S 4 43 399   v4 C:G cWW       Strong M 58 64 43 0.7 0.82 0.93 1.75 0.93 0.97 0.65 0.59 0.0 0.65 759
3556 3556 23S 4 43 436   v4 G:C cWW       Strong M 7 6 6 0.92 0.96 0.98 1.93 0.98 0.98 -0.64 -0.58 0.08 0.14 233
168 168 16S 4 44 398   v4 A:U cWW       Strong M 45 53 27 0.55 0.84 0.94 1.77 0.94 0.94 0.48 0.47 0.0 0.65 760
3563 3563 23S 4 44 434   v4 A:U cWW       Strong M 10 9 7 0.74 0.76 0.86 1.62 0.86 0.88 -0.62 -0.61 0.07 0.14 233
175 175 16S 4 45 396   v4 G:C cWW       Strong M 73 84 48 0.61 0.72 0.86 1.58 0.86 0.92 0.52 0.52 0.0 0.66 763
3570 3570 23S 4 45 433   v4 G:C cWW       Strong M 9 9 7 0.78 0.77 0.88 1.65 0.88 0.93 -0.57 -0.59 0.07 0.14 233
182 182 16S 4 46 395   v4 G:C cWW       Strong M 58 69 38 0.6 0.64 0.87 1.51 0.87 0.92 0.92 0.96 0.0 0.66 768
3577 3577 23S 4.1 46 179   v4 G:C cWW       Strong M 9 6 5 0.67 0.27 0.41 0.68 0.33 0.33 -0.63 -0.49 0.08 0.09 233
189 189 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong M 72 41 13 0.23 0.1 0.0 0.1 0.32 0.33 0.35 0.71 0.0 0.66 773
3584 3584 23S 4.1 47 178   v4 C:G cWW       Strong M 5 1 1 0.33 0.25 0.67 0.92 0.44 1.0 -0.51 -0.26 0.08 0.03 233
196 196 16S 5 52 359   v4 C:G cWW       Strong M 28 31 22 0.75 0.94 0.98 1.92 0.98 0.99 1.02 1.04 0.0 0.68 789
203 203 16S 5 53 358   v4 A:U cWW       Strong M 3 4 1 0.29 0.08 0.0 0.08 0.98 0.99 1.81 1.89 0.0 0.68 792
3591 3591 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant M 10 7 6 0.71 0.5 0.68 1.18 0.68 0.68 -0.51 -0.56 0.02 0.1 233
210 210 16S 5 54 357   v4 C:G cWW       Weak M 6 4 1 0.2 0.04 0.0 0.04 0.97 0.99 1.74 1.91 0.0 0.68 791
3598 3598 23S 5 54 116   v4 G:C cWW       Strong M 9 7 7 0.88 1.0 1.0 2.0 1.0 1.0 -0.58 -0.54 0.02 0.1 233
3605 3605 23S 5 55 115   v4 G:C cWW       Strong M 6 3 2 0.44 0.6 0.88 1.48 0.88 0.94 -0.5 -0.48 0.03 0.11 233
217 217 16S 5 56 356   v4 U:A cWW       Weak M 2 2 1 0.5 0.0 0.0 0.0 0.99 0.99 1.89 1.91 0.0 0.68 793
3612 3612 23S 5 56 114   v4 A:U cWW       Strong M 7 6 6 0.92 0.47 0.76 1.22 0.76 0.85 -0.55 -0.54 0.02 0.11 233
224 224 16S 5 57 355   v4 G:C cWW       Strong M 3 5 2 0.5 0.27 0.99 1.25 0.99 0.99 1.83 1.84 0.0 0.7 824
3619 3619 23S 6 57 70   v4 C:G cWW       Strong M 6 5 6 1.0 0.89 0.95 1.84 0.95 0.95 -0.57 -0.58 0.0 0.12 233
231 231 16S 5 58 354   v4 C:G cWW       Weak M 7 5 1 0.17 0.26 0.98 1.24 0.98 0.99 1.69 1.82 0.0 0.71 827
3626 3626 23S 6 58 69   v4 G:C cWW       Strong M 2 4 2 0.67 0.67 0.87 1.54 0.87 0.9 -0.54 -0.51 0.0 0.12 233
3633 3633 23S 6 59 68   v4 U:G cWW       Strong M 6 6 6 1.0 0.76 0.85 1.61 0.85 0.95 -0.57 -0.6 0.0 0.12 233
238 238 16S 6 61 106   v4 G:C cWW       Strong M 12 17 9 0.62 0.84 0.97 1.81 0.97 0.99 1.27 1.18 0.01 0.7 828
3640 3640 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong M 9 6 5 0.67 0.43 0.6 1.03 0.15 0.15 -0.55 -0.5 0.02 0.06 233
245 245 16S 6 62 105   v4 U:G cWW       Weak M 56 47 16 0.31 0.32 0.81 1.13 0.12 0.83 0.51 0.67 0.04 0.68 827
3647 3647 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong M 9 6 3 0.4 0.35 0.46 0.81 0.29 0.43 -0.59 -0.53 0.02 0.09 233
252 252 16S 6 63 104   v4 C:G cWW       Strong M 14 12 10 0.77 0.03 0.0 0.03 0.11 0.11 -0.4 -0.51 0.0 0.0 867
3654 3654 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant M 6 6 2 0.33 0.26 0.42 0.68 0.29 0.33 -0.57 -0.5 0.03 0.08 233
3661 3661 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong M 6 4 2 0.4 0.25 0.5 0.75 0.33 0.33 -0.49 -0.46 0.01 0.06 233
259 259 16S 6 66 103   v4 A:U cWW       Strong M 9 7 7 0.88 0.01 0.0 0.01 0.11 0.12 -0.37 -0.38 0.0 0.0 830
3668 3668 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak M 3 4 1 0.29 0.39 0.58 0.96 0.37 0.42 -0.48 -0.47 0.02 0.06 233
266 266 16S 6 67 102   v4 C:G cWW       Strong M 10 8 7 0.78 0.03 0.0 0.03 0.11 0.12 -0.42 -0.42 0.0 0.0 830
3675 3675 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong M 8 6 2 0.29 0.33 0.46 0.79 0.43 0.46 -0.61 -0.62 0.0 0.12 233
273 273 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak M 8 13 7 0.67 0.01 0.0 0.01 0.02 0.04 -0.33 -0.42 0.0 0.0 830
280 280 16S 6 69 99   v4 G:C cWW       Strong M 13 3 3 0.38 0.04 0.0 0.04 0.05 0.05 -0.41 -0.4 0.0 0.0 830
287 287 16S 6 70 98   v4 U:A cWW       Strong M 10 6 4 0.5 0.03 0.0 0.03 0.04 0.04 -0.4 -0.41 0.0 0.0 830
294 294 16S 6 73 97   v4 C:G cWW       Strong M 4 5 0 0.0 0.04 0.0 0.04 0.08 0.08 -0.36 -0.39 0.0 0.0 830
301 301 16S 6 74 96   v4 A:U cWW       Strong M 6 4 2 0.4 0.01 0.0 0.01 0.04 0.07 -0.32 -0.41 0.0 0.0 830
308 308 16S 6 75 95   v4 G:C cWW       Strong M 2 7 0 0.0 0.0 0.0 0.0 0.04 0.06 -0.32 -0.39 0.0 0.0 830
315 315 16S 6 76 93   v4 G:U cWW       Strong M 1 2 1 0.67 0.03 0.0 0.03 0.06 0.06 -0.36 -0.37 0.0 0.0 830
3682 3682 23S 7 76 110   v4 C:G cWW       Strong M 8 5 2 0.31 0.71 0.82 1.53 0.82 0.88 -0.61 -0.55 0.02 0.11 234
322 322 16S 6 77 92   v4 A:U cWW       Strong M 1 2 0 0.0 0.02 0.0 0.02 0.04 0.07 -0.31 -0.37 0.0 0.0 830
3689 3689 23S 7 77 109   v4 G:C cWW       Strong M 8 7 7 0.93 0.91 0.94 1.85 0.94 1.0 -0.62 -0.57 0.02 0.11 234
329 329 16S 6 78 91   v4 A:U cWW       Strong M 2 1 0 0.0 0.02 0.0 0.02 0.04 0.06 -0.31 -0.35 0.0 0.0 830
3696 3696 23S 7 78 108   v4 U:G cWW       Strong M 4 5 4 0.89 0.82 0.94 1.76 0.94 0.97 -0.5 -0.47 0.02 0.11 234
336 336 16S 6 79 90   v4 G:C cWW       Strong M 2 1 1 0.67 0.02 0.0 0.02 0.04 0.04 -0.29 -0.31 0.0 0.0 830
3703 3703 23S 7 79 107   v4 C:G cWW       Strong M 4 5 2 0.44 0.77 0.88 1.64 0.88 1.0 -0.59 -0.55 0.02 0.11 234
343 343 16S 6 80 89   v4 A:U cWW       Strong M 1 1 0 0.0 0.01 0.0 0.01 0.01 0.01 -0.25 -0.21 0.0 0.0 830

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");