Base-pair collective (covariation) scores

108 rows where group_code = "E" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov3, WCGU, DfDel

conformation 5

molecule 2

strength 1

  • Weak · 108 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3401 3401 23S 1 8 2895   v4 C:G cWW       Weak E 6 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.91 -0.43 0.01 0.0 41
34 34 16S 1 13 21   v4 U:G No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.9 1.97 0.01 0.77 815
111 111 16S 3 35 549   v4 G:C cWW       Weak E 2 5 1 0.29 0.03 0.0 0.03 0.92 0.99 1.84 1.58 0.01 0.85 904
125 125 16S 3 37 547   v4 U:A tWS       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.99 1.0 1.9 1.91 0.01 0.86 912
132 132 16S 4 39 403   v4 G:C cWW       Weak E 6 10 1 0.12 0.05 0.0 0.05 0.07 0.08 1.54 1.69 0.01 0.86 919
209 209 16S 5 54 357   v4 C:G cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.98 0.0 0.9 946
216 216 16S 5 56 356   v4 U:A cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 958
230 230 16S 5 58 354   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 960
244 244 16S 6 62 105   v4 U:G cWW       Weak E 5 6 0 0.0 0.0 0.0 0.0 0.0 0.0 1.72 -0.01 0.0 0.0 965
3667 3667 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak E 7 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.25 -0.05 0.45 0.0 118
272 272 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak E 8 6 3 0.43 0.61 0.97 1.58 0.97 0.98 1.63 1.6 0.0 0.92 973
3877 3877 23S 10 158 168   v4 U:G cWW       Weak E 5 6 3 0.55 0.56 0.93 1.5 0.93 0.94 0.53 0.68 0.0 0.4 120
4059 4059 23S 16 274 363   v4 C:G cWW       Weak E 15 8 2 0.17 0.31 0.51 0.82 0.37 0.39 -0.64 -0.88 0.13 0.41 204
4066 4066 23S 18 281 359   v4 C:G cWW       Weak E 6 17 1 0.09 0.34 0.57 0.91 0.51 0.55 -0.73 -0.56 0.35 0.2 204
4087 4087 23S 18 284 356   v4 U:G cWW       Weak E 17 19 6 0.33 0.29 0.42 0.7 0.34 0.53 -0.71 -0.44 0.06 0.54 204
783 783 16S 12 292 308   v4 G:C cWW       Weak E 15 8 1 0.09 0.03 0.0 0.03 0.44 0.95 0.87 1.76 0.0 0.97 1025
4150 4150 23S 18 293 347   v4 U:A cWW       Weak E 19 23 11 0.52 0.34 0.55 0.88 0.53 0.56 -0.54 -0.18 0.06 0.65 220
4248 4248 23S 20 327 335   v4 G:C cWW       Weak E 2 1 1 0.67 0.89 0.99 1.88 0.99 0.99 1.48 1.53 0.0 0.83 220
881 881 16S 14 342 347   v4 C:G cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.99 2.0 0.0 0.97 1018
916 916 16S 15 375 388   v4 U:G No BP       Weak E 1 1 1 1.0 0.12 0.0 0.12 0.0 1.0 1.93 1.84 0.01 0.96 1026
4276 4276 23S 21 378 396   v4 C:G cWW       Weak E 7 5 1 0.17 0.04 0.0 0.04 0.23 0.99 1.22 1.71 0.0 0.84 221
4304 4304 23S 21 382 392   v4 A:U cWW       Weak E 1 2 0 0.0 0.0 0.0 0.0 0.0 0.01 1.93 1.87 0.0 0.84 221
951 951 16S 16 406 436   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.02 0.0 0.0 0.0 1030
979 979 16S 16 416 427   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1030
1000 1000 16S 16 419 424   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1030
4465 4465 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak E 11 11 2 0.18 0.43 0.67 1.1 0.55 0.93 0.13 0.14 0.02 0.71 207
4521 4521 23S 25.1 564 577   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.79 207
1259 1259 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.99 1.97 0.0 0.96 1015
1308 1308 16S 20 584 757   v4 G:U cWW       Weak E 0 3 0 0.0 0.0 0.0 0.0 0.0 0.98 2.0 1.83 0.0 0.98 1033
1371 1371 16S 21 594 645   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
1385 1385 16S 21 597 643   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
4661 4661 23S 27 600 657   v4 G:U cWW       Weak E 1 5 1 0.33 0.06 0.0 0.06 0.85 1.0 1.85 1.34 0.0 0.76 201
1441 1441 16S 21 605 633   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
1448 1448 16S 21 606 632   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
4759 4759 23S 31 641 647   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 203
1525 1525 16S 22 658 748   v4 C:G cWW       Weak E 10 15 1 0.08 0.28 0.87 1.16 0.84 0.89 1.21 1.3 0.0 0.97 1028
1567 1567 16S 22 666 740   v4 G:U cWW       Weak E 1 7 0 0.0 0.08 0.0 0.08 0.01 0.08 1.9 1.46 0.0 0.97 1028
4766 4766 23S 32 671 809   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.78 204
1630 1630 16S 23 677 713   v4 U:G cWW       Weak E 10 8 3 0.33 0.06 0.0 0.06 0.84 0.92 1.62 1.47 0.0 0.98 1029
1679 1679 16S 23 684 706   v4 U:A cWW       Weak E 5 7 3 0.5 0.01 0.0 0.01 0.31 1.0 1.85 1.09 0.0 0.97 1028
4829 4829 23S 33 687 775   v4 C:G No BP       Weak E 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 1.95 0.0 0.78 205
1700 1700 16S 23 690 697   v4 G:U tSH       Weak E 2 3 0 0.0 0.0 0.0 0.0 0.01 0.99 1.96 1.89 0.0 0.98 1032
4885 4885 23S 33 695 767   v4 G:U cWW       Weak E 2 5 1 0.29 0.14 0.0 0.14 0.06 0.99 1.91 1.61 0.0 0.78 205
4934 4934 23S 34 703 729   v4 U:G No BP       Weak E 16 0 0 0.0 0.01 0.0 0.01 0.49 0.99 1.0 1.96 0.0 0.78 205
4941 4941 23S 34 707 724   v4 G:U cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 0.01 0.99 1.86 1.96 0.01 0.77 205
5137 5137 23S 37 826 831   v4 U:G cWW       Weak E 5 1 0 0.0 0.02 0.0 0.02 0.76 0.99 1.16 1.91 0.0 0.81 213
1875 1875 16S 26 832 854   v4 G:U cWW       Weak E 14 16 7 0.47 0.15 0.0 0.15 0.02 0.07 1.34 0.56 0.0 0.98 1040
1938 1938 16S 26.1 861 868   v4 G:C cWW       Weak E 5 5 1 0.2 0.48 0.97 1.46 0.96 0.98 1.76 1.71 0.0 0.97 1019
2029 2029 16S 28 925 1391   v4 G:U cWW       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.99 1.98 0.0 0.92 974
2085 2085 16S 28 935 1380   v4 A:U cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.96 0.0 0.92 973
2120 2120 16S 29 942 1341   v4 G:U cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.98 1.96 0.0 0.92 975
2176 2176 16S 30 950 1231   v4 U:G cWW       Weak E 3 1 0 0.0 0.0 0.0 0.0 0.0 0.99 1.83 1.94 0.0 0.92 974
2218 2218 16S 31 960 975   v4 U:A No BP       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.01 1.0 1.97 1.94 0.0 0.95 1006
2225 2225 16S 31 961 974   v4 U:A No BP       Weak E 0 7 0 0.0 0.12 0.0 0.12 0.03 0.99 1.94 1.78 0.0 0.95 1007
5711 5711 23S 42 1051 1108   v4 G:U cWW       Weak E 2 1 1 0.67 0.33 0.99 1.32 0.99 0.99 1.8 1.9 0.0 0.78 205
2456 2456 16S 34 1052 1206   v4 U:G cWW       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.97 1.94 0.0 0.94 999
2463 2463 16S 34 1053 1205   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.99 1.98 0.0 0.94 997
2484 2484 16S 34 1058 1199   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.93 1.98 0.0 0.95 1000
2736 2736 16S 40 1158 1178   v4 C:G No BP       Weak E 5 8 1 0.15 0.06 0.0 0.06 0.81 0.84 1.71 1.23 0.01 0.96 1019
2743 2743 16S 40 1159 1177   v4 U:G No BP       Weak E 15 13 4 0.29 0.31 0.77 1.07 0.03 0.69 0.72 1.0 0.01 0.96 1018
5956 5956 23S 46 1215 1234   v4 G:U cWW       Weak E 2 1 0 0.0 0.78 0.96 1.74 0.02 0.83 1.19 1.31 0.0 0.73 192
2855 2855 16S 41 1255 1282   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.03 -0.05 0.0 0.0 1027
3023 3023 16S 44 1401 1501   v4 G:C cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 2.0 0.0 0.81 860
6418 6418 23S 54 1415 1587   v4 U:G cWW       Weak E 8 4 1 0.17 0.5 0.63 1.13 0.34 0.49 0.09 -0.06 0.0 0.63 177
3156 3156 16S 44 1425 1475   v4 U:G cWW       Weak E 28 17 6 0.27 0.14 0.0 0.14 0.39 0.91 0.61 0.95 0.0 0.91 962
3198 3198 16S 44 1435 1466   v4 G:C cWW       Weak E 15 19 5 0.29 0.13 0.0 0.13 0.55 0.96 0.46 0.43 0.0 0.92 979
6516 6516 23S 56 1436 1556   v4 G:C cWW       Weak E 11 11 4 0.36 0.54 0.84 1.38 0.84 0.93 0.95 0.78 0.0 0.68 178
6530 6530 23S 56 1440 1551   v4 U:A cWW       Weak E 19 8 2 0.15 0.71 0.82 1.52 0.82 0.97 -0.79 -0.64 0.02 0.14 179
3240 3240 16S 44 1442 1460   v4 G:C cWW       Weak E 6 6 0 0.0 0.0 0.0 0.0 0.0 0.0 0.71 1.42 0.0 0.88 1001
6565 6565 23S 57 1445 1466   v4 G:U cWW       Weak E 7 6 3 0.46 0.29 0.79 1.08 0.05 0.76 1.29 0.81 0.0 0.68 180
6614 6614 23S 58 1468 1524   v4 U:G cWW       Weak E 13 8 0 0.0 0.21 0.5 0.71 0.1 0.2 0.5 0.39 0.02 0.65 180
6649 6649 23S 58 1478 1513   v4 G:U cWW       Weak E 7 10 2 0.23 0.58 0.69 1.28 0.53 0.55 -0.43 -0.48 0.01 0.58 180
6670 6670 23S 58 1481 1510   v4 U:G cWW       Weak E 4 9 1 0.15 0.61 0.78 1.39 0.78 0.86 -0.27 -0.08 0.01 0.61 179
6684 6684 23S 58 1483 1506   v4 G:U cWW       Weak E 8 9 3 0.35 0.69 0.87 1.56 0.87 0.97 0.18 0.35 0.01 0.66 180
3282 3282 16S 45 1506 1529   v4 U:G No BP       Weak E 3 2 0 0.0 0.0 0.0 0.0 0.03 1.0 1.83 1.8 0.01 0.64 684
3317 3317 16S 45 1511 1524   v4 G:C cWW       Weak E 1 5 0 0.0 0.0 0.0 0.0 0.94 0.99 1.89 1.62 0.0 0.67 708
3324 3324 16S 45 1512 1523   v4 U:G cWW       Weak E 0 4 0 0.0 0.03 0.0 0.03 0.0 0.95 1.91 1.63 0.0 0.67 710
6992 6992 23S 63 1707 1751   v4 G:U cWW       Weak E 1 3 0 0.0 0.0 0.0 0.0 0.03 1.0 1.9 1.79 0.0 0.59 155
7132 7132 23S 64 1770 1982   v4 G:U cWW       Weak E 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.94 1.94 0.0 0.59 155
7153 7153 23S 65 1775 1789   v4 U:A tHS       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.83 0.0 0.59 156
7230 7230 23S 66 1799 1820   v4 G:U No BP       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.78 0.0 0.58 155
7244 7244 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak E 4 5 1 0.22 0.42 0.95 1.37 0.07 0.99 1.37 1.3 0.0 0.57 156
7300 7300 23S 68 1835 1905   v4 G:C cWW       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.94 0.0 0.59 155
7328 7328 23S 68 1841 1901   v4 U:A cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.59 155
7335 7335 23S 68 1842 1898   v4 G:U cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.94 2.0 0.0 0.59 155
7384 7384 23S 68 1851 1891   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 155
7475 7475 23S 69 1907 1923   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 155
7503 7503 23S 69 1911 1919   v4 U:A No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.59 155
7524 7524 23S 71 1945 1961   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.93 0.0 0.59 155
7538 7538 23S 71 1947 1959   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.93 0.0 0.59 155
7678 7678 23S 73 2056 2612   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.51 135
7699 7699 23S 74 2065 2445   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 1.87 0.0 0.54 144
7762 7762 23S 74 2075 2434   v4 U:A No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.86 0.0 0.59 155
7769 7769 23S 75 2077 2243   v4 A:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 2.0 0.0 0.59 155
7895 7895 23S 76 2100 2189   v4 G:U cWW       Weak E 5 6 1 0.18 0.09 0.0 0.09 0.29 0.99 1.17 1.24 0.0 0.59 155
7958 7958 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak E 1 1 1 1.0 1.0 1.0 2.0 0.97 1.0 1.7 1.77 0.0 0.59 155
7993 7993 23S 77 2120 2178   v4 G:C cWW       Weak E 8 4 2 0.33 0.41 0.8 1.21 0.8 1.0 0.92 1.23 0.0 0.59 155
8049 8049 23S 78 2136 2155   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.04 -0.15 0.01 0.0 155
8098 8098 23S 78 2143 2148   v4 C:G cWW       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 -0.04 -0.29 0.03 0.0 155
8196 8196 23S 80 2249 2255   v4 U:G No BP       Weak E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.98 1.86 2.0 0.0 0.59 155

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");