Base-pair collective (covariation) scores

1,348 rows where group_code = "E" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, PE

conformation 12

strength 5

molecule 2

group_code 1

  • E · 1,348 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3352 3352 23S 1 1 2902   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.35 -0.29 0.05 0.0 40
3359 3359 23S 1 2 2901   v4 G:C cWW       Strong E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.39 -0.29 0.04 0.0 40
3366 3366 23S 1 3 2900   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.33 -0.29 0.05 0.0 41
3373 3373 23S 1 4 2899   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.47 -0.35 0.05 0.0 41
3380 3380 23S 1 5 2898   v4 A:U cWW       Strong E 2 0 0 0.0 0.0 0.0 0.0 0.0 1.0 -0.48 -0.49 0.06 0.0 41
3387 3387 23S 1 6 2897   v4 A:U cWW       Strong E 2 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.55 -0.45 0.05 0.0 41
3394 3394 23S 1 7 2896   v4 G:C cWW       Strong E 3 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.66 -0.45 0.03 0.0 41
3401 3401 23S 1 8 2895   v4 C:G cWW       Weak E 6 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.91 -0.43 0.01 0.0 41
6 6 16S 1 9 25   v4 G:C cWW       Strong E 3 2 2 0.8 0.14 0.0 0.14 0.99 0.99 1.73 1.95 0.02 0.73 784
13 13 16S 1 10 24   v4 A:U cWW       Strong E 3 2 2 0.8 0.9 0.99 1.9 0.99 0.99 1.5 1.63 0.01 0.74 793
20 20 16S 1 11 23   v4 G:C cWW       Strong E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.89 1.99 0.01 0.76 806
27 27 16S 1 12 22   v4 U:G cWW       Strong E 3 4 3 0.86 0.11 0.0 0.11 0.95 0.95 1.63 1.91 0.0 0.77 815
34 34 16S 1 13 21   v4 U:G No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.9 1.97 0.01 0.77 815
3408 3408 23S 2 15 525   v4 G:U cWW       Strong E 8 11 2 0.21 0.48 0.86 1.34 0.8 0.89 0.86 0.91 0.0 0.43 116
3415 3415 23S 2 16 524   v4 C:G cWW       Strong E 6 15 2 0.19 0.53 0.83 1.36 0.83 0.96 0.71 0.63 0.0 0.44 116
41 41 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong E 2 2 1 0.5 0.04 0.0 0.04 0.97 0.99 1.91 1.81 0.0 0.77 812
3422 3422 23S 2 17 523   v4 G:C cWW       Strong E 6 7 4 0.61 0.88 0.95 1.83 0.95 0.96 0.72 0.67 0.0 0.43 116
48 48 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong E 2 5 1 0.29 0.5 0.93 1.43 0.93 0.93 1.58 1.34 0.0 0.78 825
3429 3429 23S 2 18 522   v4 U:A cWW       Strong E 6 13 1 0.1 0.51 0.83 1.35 0.83 0.94 0.86 0.42 0.0 0.44 116
55 55 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong E 0 3 0 0.0 0.83 0.99 1.83 0.99 0.99 1.82 1.79 0.0 0.78 826
3436 3436 23S 2 19 521   v4 A:U cWW       Strong E 9 17 7 0.54 0.83 0.91 1.75 0.91 0.94 0.31 0.47 0.0 0.44 116
3443 3443 23S 2 20 520   v4 C:G cWW       Strong E 9 9 4 0.44 0.84 0.94 1.78 0.94 0.96 0.42 0.51 0.0 0.44 116
3450 3450 23S 2 21 519   v4 A:U cWW       Strong E 11 16 7 0.52 0.57 0.72 1.29 0.72 0.97 0.53 0.88 0.0 0.44 116
3457 3457 23S 2 22 518   v4 C:G cWW       Strong E 2 4 1 0.33 0.4 0.97 1.37 0.97 0.98 1.74 1.72 0.0 0.44 116
3464 3464 23S 2 23 517   v4 G:C cWW       Strong E 8 9 3 0.35 0.73 0.87 1.6 0.87 0.96 0.87 0.86 0.0 0.44 116
3471 3471 23S 2 24 516   v4 G:C cWW       Strong E 6 10 3 0.38 0.88 0.96 1.84 0.96 0.96 0.57 0.62 0.0 0.44 116
62 62 16S 3 27 556   v4 G:C cWW       Strong E 8 9 5 0.59 0.9 0.97 1.86 0.97 0.97 0.83 0.98 0.0 0.84 883
69 69 16S 3 28 555   v4 A:U cWW       Strong E 9 12 1 0.1 0.03 0.0 0.03 0.26 0.98 1.63 1.19 0.0 0.84 889
76 76 16S 3 29 554   v4 U:A cWW       Strong E 2 6 2 0.5 0.35 0.99 1.34 0.99 0.99 1.5 1.82 0.04 0.79 880
83 83 16S 3 30 553   v4 U:A cWW       Strong E 6 5 4 0.73 0.36 0.98 1.34 0.98 0.99 1.72 1.85 0.01 0.85 898
3478 3478 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong E 7 8 5 0.67 0.92 0.96 1.88 0.96 1.0 0.15 0.41 0.01 0.44 117
3485 3485 23S 3 31 474   v4 C:G cWW       Strong E 4 6 2 0.4 0.89 0.95 1.85 0.95 0.99 0.42 0.34 0.06 0.42 116
90 90 16S 3 32 552   v4 A:U cWW       Strong E 6 6 3 0.5 0.47 0.97 1.44 0.97 0.97 1.56 1.61 0.01 0.84 897
3492 3492 23S 3 32 473   v4 C:G cWW       Strong E 3 2 2 0.8 0.85 0.98 1.83 0.98 0.99 1.28 1.25 0.04 0.43 116
97 97 16S 3 33 551   v4 A:U cWW       Strong E 2 3 2 0.8 0.4 1.0 1.4 1.0 1.0 1.87 1.94 0.01 0.84 895
104 104 16S 3 34 550   v4 C:G cWW       Strong E 10 4 2 0.29 0.02 0.0 0.02 0.12 0.99 1.36 1.78 0.01 0.84 893
111 111 16S 3 35 549   v4 G:C cWW       Weak E 2 5 1 0.29 0.03 0.0 0.03 0.92 0.99 1.84 1.58 0.01 0.85 904
3499 3499 23S 4 35 445   v4 G:C cWW       Strong E 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.71 1.93 0.01 0.43 115
118 118 16S 3 36 548   v4 C:G cWW       Strong E 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.89 1.95 0.01 0.85 909
3506 3506 23S 4 36 444   v4 G:C cWW       Strong E 1 2 0 0.0 1.0 1.0 2.0 1.0 1.0 1.7 1.85 0.01 0.43 116
125 125 16S 3 37 547   v4 U:A tWS       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.99 1.0 1.9 1.91 0.01 0.86 912
3513 3513 23S 4 37 442   v4 C:G cWW       Strong E 7 8 2 0.27 0.45 0.86 1.31 0.86 1.0 0.83 1.29 0.0 0.43 115
3520 3520 23S 4 38 441   v4 A:U cWW       Strong E 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 1.31 1.69 0.0 0.43 115
132 132 16S 4 39 403   v4 G:C cWW       Weak E 6 10 1 0.12 0.05 0.0 0.05 0.07 0.08 1.54 1.69 0.01 0.86 919
3527 3527 23S 4 39 440   v4 G:C cWW       Strong E 4 8 3 0.5 1.0 1.0 2.0 1.0 1.0 1.0 0.96 0.0 0.43 115
139 139 16S 4 40 402   v4 C:G cWW       Strong E 8 9 6 0.71 0.4 0.98 1.38 0.98 0.98 1.7 1.75 0.01 0.86 917
3534 3534 23S 4 40 439   v4 U:A cWW       Strong E 11 18 6 0.41 0.92 0.95 1.87 0.95 0.99 0.02 0.18 0.0 0.43 115
146 146 16S 4 41 401   v4 G:C cWW       Strong E 9 21 2 0.13 0.03 0.0 0.03 0.44 0.47 1.53 0.37 0.01 0.86 920
3541 3541 23S 4 41 438   v4 C:G cWW       Strong E 9 17 6 0.46 0.98 0.99 1.97 0.99 0.99 0.51 0.68 0.0 0.43 115
153 153 16S 4 42 400   v4 G:C cWW       Strong E 5 6 3 0.55 0.75 0.99 1.74 0.99 1.0 1.76 1.81 0.01 0.87 922
3548 3548 23S 4 42 437   v4 A:U cWW       Strong E 11 17 8 0.57 0.95 0.98 1.94 0.98 0.99 0.6 0.48 0.0 0.43 115
160 160 16S 4 43 399   v4 C:G cWW       Strong E 13 9 4 0.36 0.07 0.0 0.07 0.27 0.29 1.25 1.14 0.01 0.87 922
3555 3555 23S 4 43 436   v4 G:C cWW       Strong E 6 14 6 0.6 0.94 0.98 1.92 0.98 0.98 0.51 0.56 0.01 0.43 116
167 167 16S 4 44 398   v4 A:U cWW       Strong E 7 2 0 0.0 0.48 0.95 1.44 0.01 0.01 1.55 1.57 0.01 0.88 933
3562 3562 23S 4 44 434   v4 A:U cWW       Strong E 8 22 1 0.07 0.31 0.58 0.89 0.58 0.66 0.61 0.0 0.01 0.43 115
174 174 16S 4 45 396   v4 G:C cWW       Strong E 9 5 4 0.57 0.27 0.94 1.21 0.03 0.05 1.68 1.67 0.0 0.89 935
3569 3569 23S 4 45 433   v4 G:C cWW       Strong E 6 17 2 0.17 0.17 0.0 0.17 0.16 0.33 0.39 -0.23 0.07 0.4 116
181 181 16S 4 46 395   v4 G:C cWW       Strong E 10 4 3 0.43 0.14 0.0 0.14 0.82 1.0 1.23 1.82 0.0 0.89 938
3576 3576 23S 4.1 46 179   v4 G:C cWW       Strong E 0 18 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.25 0.73 0.41 0.04 116
188 188 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong E 2 2 2 1.0 0.85 1.0 1.85 1.0 1.0 1.83 1.85 0.0 0.89 936
3583 3583 23S 4.1 47 178   v4 C:G cWW       Strong E 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.84 1.72 0.0 0.43 114
195 195 16S 5 52 359   v4 C:G cWW       Strong E 5 6 5 0.91 0.9 1.0 1.9 1.0 1.0 1.74 1.75 0.0 0.89 940
202 202 16S 5 53 358   v4 A:U cWW       Strong E 3 2 2 0.8 0.33 1.0 1.33 1.0 1.0 1.95 1.99 0.0 0.9 944
3590 3590 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant E 1 1 0 0.0 0.0 0.0 0.0 0.02 0.02 1.84 1.79 0.0 0.44 117
209 209 16S 5 54 357   v4 C:G cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.98 0.0 0.9 946
3597 3597 23S 5 54 116   v4 G:C cWW       Strong E 0 4 0 0.0 0.0 0.0 0.0 0.25 0.99 1.91 1.0 0.0 0.44 117
3604 3604 23S 5 55 115   v4 G:C cWW       Strong E 7 4 2 0.36 0.87 0.97 1.83 0.97 1.0 1.04 1.04 0.0 0.44 117
216 216 16S 5 56 356   v4 U:A cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 958
3611 3611 23S 5 56 114   v4 A:U cWW       Strong E 3 6 5 1.0 1.0 1.0 2.0 1.0 1.0 0.81 0.85 0.0 0.44 117
223 223 16S 5 57 355   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.99 0.0 0.91 957
3618 3618 23S 6 57 70   v4 C:G cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.91 1.78 0.01 0.44 118
230 230 16S 5 58 354   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 960
3625 3625 23S 6 58 69   v4 G:C cWW       Strong E 2 3 1 0.4 0.2 0.0 0.2 0.97 0.99 1.81 1.56 0.01 0.45 118
3632 3632 23S 6 59 68   v4 U:G cWW       Strong E 5 3 2 0.5 0.44 0.87 1.32 0.87 1.0 1.22 1.31 0.01 0.45 118
237 237 16S 6 61 106   v4 G:C cWW       Strong E 1 10 1 0.18 0.09 0.0 0.09 0.97 0.99 1.91 1.77 0.0 0.91 963
3639 3639 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong E 5 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.38 -0.05 0.45 0.0 117
244 244 16S 6 62 105   v4 U:G cWW       Weak E 5 6 0 0.0 0.0 0.0 0.0 0.0 0.0 1.72 -0.01 0.0 0.0 965
3646 3646 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong E 7 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.23 -0.05 0.45 0.0 117
251 251 16S 6 63 104   v4 C:G cWW       Strong E 10 0 0 0.0 0.0 0.0 0.0 0.73 0.74 0.72 1.74 0.05 0.88 971
3653 3653 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant E 4 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.04 -0.05 0.45 0.0 118
3660 3660 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.26 -0.05 0.45 0.0 118
258 258 16S 6 66 103   v4 A:U cWW       Strong E 7 9 0 0.0 0.13 0.0 0.13 0.84 0.86 1.57 1.06 0.0 0.92 971
3667 3667 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak E 7 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.25 -0.05 0.45 0.0 118
265 265 16S 6 67 102   v4 C:G cWW       Strong E 7 8 3 0.4 0.5 0.97 1.47 0.97 0.98 1.66 1.68 0.0 0.92 974
3674 3674 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong E 7 8 2 0.27 0.11 0.0 0.11 0.39 0.48 0.97 0.16 0.01 0.44 119
272 272 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak E 8 6 3 0.43 0.61 0.97 1.58 0.97 0.98 1.63 1.6 0.0 0.92 973
279 279 16S 6 69 99   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.02 -0.02 0.0 0.0 1020
286 286 16S 6 70 98   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
293 293 16S 6 73 97   v4 C:G cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
300 300 16S 6 74 96   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
307 307 16S 6 75 95   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
314 314 16S 6 76 93   v4 G:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
3681 3681 23S 7 76 110   v4 C:G cWW       Strong E 8 2 0 0.0 0.44 0.74 1.18 0.16 0.71 0.48 0.04 0.0 0.4 119
321 321 16S 6 77 92   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
3688 3688 23S 7 77 109   v4 G:C cWW       Strong E 6 5 1 0.18 0.15 0.0 0.15 0.32 0.34 0.21 1.07 0.03 0.42 119
328 328 16S 6 78 91   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
3695 3695 23S 7 78 108   v4 U:G cWW       Strong E 2 7 2 0.44 0.5 0.74 1.25 0.74 0.93 0.05 0.48 0.03 0.42 119
335 335 16S 6 79 90   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
3702 3702 23S 7 79 107   v4 C:G cWW       Strong E 9 3 0 0.0 0.35 0.88 1.23 0.88 0.97 1.0 0.76 0.01 0.42 119
342 342 16S 6 80 89   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");