Base-pair collective (covariation) scores

756 rows where strength = "Weak" sorted by position_1

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group_code 7

  • 3 108
  • A 108
  • B 108
  • C 108
  • E 108
  • M 108
  • T 108

conformation 5

molecule 2

strength 1

  • Weak · 756 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3396 3396 23S 1 8 2895   v4 C:G cWW       Weak T 31 29 7 0.23 0.57 0.73 1.3 0.73 0.92 -0.23 -0.26 0.0 0.27 329
3397 3397 23S 1 8 2895   v4 C:G cWW       Weak 3 22 21 5 0.23 0.62 0.75 1.37 0.75 0.99 -0.14 -0.16 0.01 0.33 251
3398 3398 23S 1 8 2895   v4 C:G cWW       Weak B 11 13 3 0.25 0.57 0.72 1.29 0.72 0.99 0.77 0.73 0.0 0.54 177
3399 3399 23S 1 8 2895   v4 C:G cWW       Weak A 5 8 2 0.31 0.9 0.93 1.82 0.93 0.96 0.1 -0.3 0.07 0.68 33
3400 3400 23S 1 8 2895   v4 C:G cWW       Weak C 4 4 1 0.25 0.26 0.68 0.94 0.68 0.7 0.57 1.32 0.0 0.43 44
3401 3401 23S 1 8 2895   v4 C:G cWW       Weak E 6 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.91 -0.43 0.01 0.0 41
3402 3402 23S 1 8 2895   v4 C:G cWW       Weak M 5 4 1 0.22 0.47 0.67 1.14 0.67 0.74 -0.74 -0.53 0.02 0.09 34
29 29 16S 1 13 21   v4 U:G No BP       Weak T 14 68 3 0.07 0.02 0.0 0.02 0.09 0.98 1.8 1.5 0.0 0.46 3890
30 30 16S 1 13 21   v4 U:G No BP       Weak 3 4 7 1 0.18 0.05 0.0 0.05 0.0 1.0 1.93 1.91 0.0 0.43 3097
31 31 16S 1 13 21   v4 U:G No BP       Weak B 4 6 1 0.2 0.05 0.0 0.05 0.0 0.99 1.94 1.89 0.0 0.36 2128
32 32 16S 1 13 21   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.58 154
33 33 16S 1 13 21   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.95 2.0 1.66 0.0 0.69 126
34 34 16S 1 13 21   v4 U:G No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.9 1.97 0.01 0.77 815
35 35 16S 1 13 21   v4 U:G No BP       Weak M 10 59 2 0.06 0.16 0.0 0.16 0.51 0.9 1.4 0.89 0.0 0.57 669
106 106 16S 3 35 549   v4 G:C cWW       Weak T 75 71 20 0.27 0.26 0.87 1.13 0.87 0.98 1.57 1.35 0.0 0.63 5420
107 107 16S 3 35 549   v4 G:C cWW       Weak 3 14 10 4 0.33 0.03 0.0 0.03 0.94 0.99 1.89 1.68 0.0 0.63 4555
108 108 16S 3 35 549   v4 G:C cWW       Weak B 10 2 2 0.33 0.11 0.0 0.11 0.99 0.99 1.91 1.94 0.0 0.59 3467
109 109 16S 3 35 549   v4 G:C cWW       Weak A 2 3 1 0.4 0.2 0.0 0.2 0.05 0.99 1.89 1.65 0.0 0.69 184
110 110 16S 3 35 549   v4 G:C cWW       Weak C 0 6 0 0.0 0.0 0.0 0.0 0.87 1.0 2.0 1.43 0.0 0.75 136
111 111 16S 3 35 549   v4 G:C cWW       Weak E 2 5 1 0.29 0.03 0.0 0.03 0.92 0.99 1.84 1.58 0.01 0.85 904
112 112 16S 3 35 549   v4 G:C cWW       Weak M 61 55 16 0.28 0.19 0.0 0.19 0.45 0.9 0.77 1.11 0.0 0.63 733
120 120 16S 3 37 547   v4 U:A tWS       Weak T 34 24 5 0.17 0.06 0.0 0.06 0.98 0.99 1.85 1.89 0.0 0.65 5551
121 121 16S 3 37 547   v4 U:A tWS       Weak 3 4 9 0 0.0 0.02 0.0 0.02 0.99 1.0 1.93 1.92 0.0 0.65 4665
122 122 16S 3 37 547   v4 U:A tWS       Weak B 4 5 0 0.0 0.02 0.0 0.02 0.99 0.99 1.94 1.91 0.0 0.61 3570
123 123 16S 3 37 547   v4 U:A tWS       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69 183
124 124 16S 3 37 547   v4 U:A tWS       Weak C 3 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.79 1.94 0.01 0.83 152
125 125 16S 3 37 547   v4 U:A tWS       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.99 1.0 1.9 1.91 0.01 0.86 912
126 126 16S 3 37 547   v4 U:A tWS       Weak M 27 15 5 0.24 0.09 0.0 0.09 0.92 0.93 1.48 1.78 0.0 0.63 738
127 127 16S 4 39 403   v4 G:C cWW       Weak T 95 98 28 0.29 0.45 0.82 1.27 0.82 0.83 1.17 0.93 0.0 0.68 5839
128 128 16S 4 39 403   v4 G:C cWW       Weak 3 24 35 6 0.2 0.24 0.81 1.05 0.81 0.82 1.57 1.12 0.0 0.69 4942
129 129 16S 4 39 403   v4 G:C cWW       Weak B 18 24 5 0.24 0.44 0.98 1.42 0.98 0.99 1.8 1.75 0.0 0.65 3830
130 130 16S 4 39 403   v4 G:C cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.93 0.0 0.73 193
131 131 16S 4 39 403   v4 G:C cWW       Weak C 1 3 1 0.5 0.33 0.99 1.32 0.99 0.99 1.89 1.81 0.0 0.85 154
132 132 16S 4 39 403   v4 G:C cWW       Weak E 6 10 1 0.12 0.05 0.0 0.05 0.07 0.08 1.54 1.69 0.01 0.86 919
133 133 16S 4 39 403   v4 G:C cWW       Weak M 70 60 21 0.32 0.49 0.84 1.33 0.84 0.86 0.76 0.62 0.0 0.64 747
204 204 16S 5 54 357   v4 C:G cWW       Weak T 12 6 2 0.22 0.29 0.99 1.28 0.99 1.0 1.92 1.94 0.0 0.73 6225
205 205 16S 5 54 357   v4 C:G cWW       Weak 3 6 2 1 0.25 0.41 1.0 1.4 1.0 1.0 1.94 1.94 0.0 0.74 5285
206 206 16S 5 54 357   v4 C:G cWW       Weak B 5 2 1 0.29 0.52 1.0 1.51 1.0 1.0 1.94 1.94 0.0 0.71 4138
207 207 16S 5 54 357   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.85 0.0 0.76 201
208 208 16S 5 54 357   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
209 209 16S 5 54 357   v4 C:G cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.98 0.0 0.9 946
210 210 16S 5 54 357   v4 C:G cWW       Weak M 6 4 1 0.2 0.04 0.0 0.04 0.97 0.99 1.74 1.91 0.0 0.68 791
211 211 16S 5 56 356   v4 U:A cWW       Weak T 4 4 1 0.25 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.73 6225
212 212 16S 5 56 356   v4 U:A cWW       Weak 3 2 2 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.73 5283
213 213 16S 5 56 356   v4 U:A cWW       Weak B 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.7 4124
214 214 16S 5 56 356   v4 U:A cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.8 0.02 0.74 201
215 215 16S 5 56 356   v4 U:A cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
216 216 16S 5 56 356   v4 U:A cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 958
217 217 16S 5 56 356   v4 U:A cWW       Weak M 2 2 1 0.5 0.0 0.0 0.0 0.99 0.99 1.89 1.91 0.0 0.68 793
225 225 16S 5 58 354   v4 C:G cWW       Weak T 16 11 3 0.22 0.46 0.99 1.45 0.99 0.99 1.87 1.88 0.0 0.74 6357
226 226 16S 5 58 354   v4 C:G cWW       Weak 3 9 6 2 0.27 0.54 0.99 1.54 0.99 0.99 1.9 1.89 0.0 0.75 5381
227 227 16S 5 58 354   v4 C:G cWW       Weak B 5 3 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.72 4221
228 228 16S 5 58 354   v4 C:G cWW       Weak A 4 3 2 0.57 0.91 0.98 1.88 0.98 0.98 1.24 1.11 0.02 0.74 200
229 229 16S 5 58 354   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
230 230 16S 5 58 354   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 960
231 231 16S 5 58 354   v4 C:G cWW       Weak M 7 5 1 0.17 0.26 0.98 1.24 0.98 0.99 1.69 1.82 0.0 0.71 827
239 239 16S 6 62 105   v4 U:G cWW       Weak T 65 65 17 0.26 0.21 0.96 1.16 0.03 0.97 1.64 1.66 0.0 0.76 6551
240 240 16S 6 62 105   v4 U:G cWW       Weak 3 9 18 1 0.07 0.01 0.0 0.01 0.02 0.99 1.9 1.87 0.0 0.78 5571
241 241 16S 6 62 105   v4 U:G cWW       Weak B 4 12 1 0.12 0.02 0.0 0.02 0.01 0.99 1.95 1.9 0.0 0.75 4404
242 242 16S 6 62 105   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.77 202
243 243 16S 6 62 105   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.94 0.01 0.89 162
244 244 16S 6 62 105   v4 U:G cWW       Weak E 5 6 0 0.0 0.0 0.0 0.0 0.0 0.0 1.72 -0.01 0.0 0.0 965
245 245 16S 6 62 105   v4 U:G cWW       Weak M 56 47 16 0.31 0.32 0.81 1.13 0.12 0.83 0.51 0.67 0.04 0.68 827
3662 3662 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak T 15 8 3 0.26 0.38 0.94 1.32 0.94 0.95 -0.29 -0.15 0.12 0.39 740
3663 3663 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak 3 10 2 1 0.17 0.35 0.96 1.32 0.96 0.98 0.75 0.43 0.19 0.47 411
3664 3664 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak B 2 1 0 0.0 0.29 0.96 1.25 0.96 0.98 1.63 1.86 0.0 0.79 257
3665 3665 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.69 0.0 0.88 36
3666 3666 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak C 2 2 1 0.5 0.5 0.97 1.47 0.97 0.97 1.66 1.51 0.01 0.92 96
3667 3667 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak E 7 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.25 -0.05 0.45 0.0 118
3668 3668 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak M 3 4 1 0.29 0.39 0.58 0.96 0.37 0.42 -0.48 -0.47 0.02 0.06 233
267 267 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak T 39 50 15 0.34 0.05 0.0 0.05 0.2 0.21 0.52 0.9 0.01 0.68 6584
268 268 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak 3 27 32 7 0.24 0.04 0.0 0.04 0.21 0.21 1.18 1.55 0.0 0.78 5599
269 269 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak B 15 18 1 0.06 0.13 0.0 0.13 0.01 0.01 1.86 1.76 0.0 0.75 4427
270 270 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak A 4 8 3 0.5 0.36 0.87 1.23 0.86 0.88 1.45 0.91 0.0 0.74 199
271 271 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak C 4 5 1 0.22 0.08 0.0 0.08 0.05 0.06 1.78 1.65 0.0 0.9 164
272 272 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak E 8 6 3 0.43 0.61 0.97 1.58 0.97 0.98 1.63 1.6 0.0 0.92 973
273 273 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak M 8 13 7 0.67 0.01 0.0 0.01 0.02 0.04 -0.33 -0.42 0.0 0.0 830
3872 3872 23S 10 158 168   v4 U:G cWW       Weak T 18 23 8 0.39 0.1 0.0 0.1 0.27 0.9 -0.27 -0.52 0.01 0.43 759
3873 3873 23S 10 158 168   v4 U:G cWW       Weak 3 11 10 5 0.48 0.06 0.0 0.06 0.29 0.97 0.62 0.08 0.0 0.56 426
3874 3874 23S 10 158 168   v4 U:G cWW       Weak B 5 3 1 0.25 0.11 0.0 0.11 0.03 0.99 1.15 1.28 0.0 0.75 270
3875 3875 23S 10 158 168   v4 U:G cWW       Weak A 1 1 1 1.0 0.5 0.75 1.25 0.0 0.25 -0.59 -0.37 0.07 0.1 36
3876 3876 23S 10 158 168   v4 U:G cWW       Weak C 6 13 3 0.32 0.17 0.0 0.17 0.18 0.65 0.17 0.32 0.07 0.85 99
3877 3877 23S 10 158 168   v4 U:G cWW       Weak E 5 6 3 0.55 0.56 0.93 1.5 0.93 0.94 0.53 0.68 0.0 0.4 120
3878 3878 23S 10 158 168   v4 U:G cWW       Weak M 1 0 0 0.0 0.5 0.83 1.33 0.33 0.33 -0.15 -0.17 0.0 0.02 234
4054 4054 23S 16 274 363   v4 C:G cWW       Weak T 32 17 4 0.16 0.32 0.46 0.78 0.46 0.56 -0.97 -0.85 0.16 0.2 872
4055 4055 23S 16 274 363   v4 C:G cWW       Weak 3 27 14 4 0.2 0.32 0.46 0.78 0.45 0.56 -0.9 -0.96 0.22 0.3 518
4056 4056 23S 16 274 363   v4 C:G cWW       Weak B 8 2 1 0.2 0.88 0.92 1.79 0.92 0.98 -0.36 -0.38 0.01 0.73 276
4057 4057 23S 16 274 363   v4 C:G cWW       Weak A 4 4 1 0.25 0.58 0.72 1.31 0.72 0.75 0.44 0.59 0.0 0.88 36
4058 4058 23S 16 274 363   v4 C:G cWW       Weak C 5 2 0 0.0 0.43 0.56 0.98 0.44 0.44 -0.85 -0.64 0.32 0.09 100
4059 4059 23S 16 274 363   v4 C:G cWW       Weak E 15 8 2 0.17 0.31 0.51 0.82 0.37 0.39 -0.64 -0.88 0.13 0.41 204
4060 4060 23S 16 274 363   v4 C:G cWW       Weak M 0 1 0 0.0 0.5 0.75 1.25 0.5 0.75 -0.23 -0.3 0.01 0.03 254
4061 4061 23S 18 281 359   v4 C:G cWW       Weak T 41 56 13 0.27 0.32 0.43 0.75 0.46 0.61 -0.97 -0.87 0.09 0.4 869
4062 4062 23S 18 281 359   v4 C:G cWW       Weak 3 26 44 9 0.26 0.34 0.46 0.81 0.44 0.61 -0.79 -0.35 0.14 0.56 516
4063 4063 23S 18 281 359   v4 C:G cWW       Weak B 15 22 5 0.27 0.33 0.49 0.82 0.38 0.58 0.08 0.03 0.01 0.83 276
4064 4064 23S 18 281 359   v4 C:G cWW       Weak A 5 5 3 0.6 0.79 0.86 1.65 0.86 0.92 0.15 0.06 0.0 0.88 36
4065 4065 23S 18 281 359   v4 C:G cWW       Weak C 14 9 3 0.26 0.32 0.55 0.87 0.55 0.61 -0.8 -0.62 0.05 0.49 99
4066 4066 23S 18 281 359   v4 C:G cWW       Weak E 6 17 1 0.09 0.34 0.57 0.91 0.51 0.55 -0.73 -0.56 0.35 0.2 204
4067 4067 23S 18 281 359   v4 C:G cWW       Weak M 1 3 1 0.5 0.55 0.67 1.21 0.67 0.73 -0.35 -0.35 0.0 0.05 254
4082 4082 23S 18 284 356   v4 U:G cWW       Weak T 73 65 23 0.33 0.35 0.51 0.86 0.51 0.63 -0.91 -0.88 0.0 0.51 870
4083 4083 23S 18 284 356   v4 U:G cWW       Weak 3 49 44 17 0.37 0.37 0.55 0.92 0.55 0.66 -0.39 -0.3 0.01 0.7 517

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");