Base-pair collective (covariation) scores

11 rows where group_code = "B" and strength = "Significant" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

conformation 4

strength 1

  • Significant · 11 ✖

molecule 1

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3587 3587 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant B 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.77 252
3650 3650 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant B 11 11 8 0.73 0.49 0.67 1.16 0.67 0.67 0.76 0.15 0.0 0.79 257
3986 3986 23S 13 239 258   v4 C:G cWW       Significant B 27 21 9 0.38 0.26 0.61 0.87 0.44 0.92 0.67 0.41 0.0 0.84 276
4105 4105 23S 18 287 353   v4 G:C cWW       Significant B 32 27 12 0.41 0.39 0.52 0.91 0.52 0.62 0.08 0.07 0.01 0.83 275
4833 4833 23S 33 688 774   v4 U:G No BP       Significant B 0 4 0 0.0 0.0 0.0 0.0 0.89 0.98 2.0 1.41 0.0 0.86 282
5330 5330 23S 38 874 903   v4 G:C cWW       Significant B 6 6 3 0.5 0.26 0.66 0.91 0.66 1.0 1.29 0.66 0.0 0.75 244
5645 5645 23S 42 1035 1120   v4 U:G cWW       Significant B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.73 239
6240 6240 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant B 7 5 2 0.33 0.85 0.94 1.78 0.63 0.65 0.71 0.81 0.0 0.81 263
6933 6933 23S 61 1667 1993   v4 G:U tSH       Significant B 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.96 0.0 0.72 236
8018 8018 23S 77 2124 2174   v4 G:C cWW       Significant B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
8543 8543 23S 88 2401 2415   v4 U:G cWW       Significant B 4 0 0 0.0 0.0 0.0 0.0 0.07 1.0 1.61 1.95 0.0 0.74 241

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");