Base-pair collective (covariation) scores

1,348 rows where group_code = "B" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, DfDel

conformation 12

strength 5

molecule 2

group_code 1

  • B · 1,348 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3349 3349 23S 1 1 2902   v4 G:C cWW       Strong B 11 10 3 0.29 0.67 0.92 1.58 0.92 0.96 0.63 0.73 0.05 0.49 173
3356 3356 23S 1 2 2901   v4 G:C cWW       Strong B 10 11 4 0.38 0.82 0.94 1.75 0.94 0.96 0.52 0.8 0.01 0.53 173
3363 3363 23S 1 3 2900   v4 U:A cWW       Strong B 7 10 5 0.59 0.43 0.83 1.26 0.87 0.9 0.38 0.63 0.01 0.52 173
3370 3370 23S 1 4 2899   v4 U:A cWW       Strong B 12 15 10 0.74 0.93 0.96 1.9 0.96 0.98 0.61 0.77 0.01 0.53 173
3377 3377 23S 1 5 2898   v4 A:U cWW       Strong B 3 1 0 0.0 1.0 1.0 2.0 1.0 1.0 1.66 1.95 0.01 0.53 174
3384 3384 23S 1 6 2897   v4 A:U cWW       Strong B 2 2 1 0.5 0.5 0.99 1.49 0.99 1.0 1.85 1.91 0.01 0.53 174
3391 3391 23S 1 7 2896   v4 G:C cWW       Strong B 5 4 4 0.89 0.88 0.99 1.87 0.99 0.99 1.64 1.66 0.01 0.54 177
3398 3398 23S 1 8 2895   v4 C:G cWW       Weak B 11 13 3 0.25 0.57 0.72 1.29 0.72 0.99 0.77 0.73 0.0 0.54 177
3 3 16S 1 9 25   v4 G:C cWW       Strong B 13 7 1 0.1 0.02 0.0 0.02 0.97 0.98 1.86 1.85 0.0 0.33 1946
10 10 16S 1 10 24   v4 A:U cWW       Strong B 14 8 1 0.09 0.01 0.0 0.01 0.96 0.99 1.73 1.9 0.0 0.34 2016
17 17 16S 1 11 23   v4 G:C cWW       Strong B 6 4 1 0.2 0.27 0.99 1.26 0.99 0.99 1.91 1.94 0.0 0.35 2053
24 24 16S 1 12 22   v4 U:G cWW       Strong B 6 6 1 0.17 0.08 0.0 0.08 0.01 0.99 1.88 1.91 0.0 0.36 2131
31 31 16S 1 13 21   v4 U:G No BP       Weak B 4 6 1 0.2 0.05 0.0 0.05 0.0 0.99 1.94 1.89 0.0 0.36 2128
3405 3405 23S 2 15 525   v4 G:U cWW       Strong B 1 4 1 0.4 0.33 0.98 1.32 0.02 1.0 1.93 1.83 0.0 0.76 247
3412 3412 23S 2 16 524   v4 C:G cWW       Strong B 11 16 9 0.67 0.89 0.94 1.82 0.94 1.0 0.28 0.27 0.0 0.76 246
38 38 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong B 1 3 0 0.0 0.07 0.0 0.07 0.99 0.99 1.95 1.96 0.0 0.37 2163
3419 3419 23S 2 17 523   v4 G:C cWW       Strong B 0 4 0 0.0 0.0 0.0 0.0 0.97 1.0 2.0 1.81 0.0 0.77 250
45 45 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong B 24 18 10 0.48 0.64 0.98 1.62 0.98 0.99 1.7 1.75 0.0 0.37 2163
3426 3426 23S 2 18 522   v4 U:A cWW       Strong B 5 4 3 0.67 0.92 0.98 1.9 0.98 1.0 1.27 1.37 0.0 0.77 250
52 52 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong B 32 13 1 0.04 0.72 0.94 1.66 0.94 0.95 1.29 1.34 0.0 0.37 2190
3433 3433 23S 2 19 521   v4 A:U cWW       Strong B 11 11 3 0.27 0.52 0.68 1.2 0.68 0.98 0.29 0.68 0.0 0.77 251
3440 3440 23S 2 20 520   v4 C:G cWW       Strong B 13 14 9 0.67 0.93 0.96 1.89 0.96 0.98 0.33 0.4 0.0 0.77 251
3447 3447 23S 2 21 519   v4 A:U cWW       Strong B 13 14 7 0.52 0.73 0.89 1.62 0.76 0.98 0.59 0.53 0.0 0.77 251
3454 3454 23S 2 22 518   v4 C:G cWW       Strong B 12 13 4 0.32 0.65 0.8 1.45 0.8 0.99 0.73 0.75 0.0 0.76 250
3461 3461 23S 2 23 517   v4 G:C cWW       Strong B 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.96 1.97 0.0 0.77 251
3468 3468 23S 2 24 516   v4 G:C cWW       Strong B 3 5 3 0.75 1.0 1.0 2.0 1.0 1.0 1.88 1.87 0.0 0.77 250
59 59 16S 3 27 556   v4 G:C cWW       Strong B 3 1 1 0.5 0.0 0.0 0.0 0.99 0.99 1.92 1.98 0.0 0.44 2600
66 66 16S 3 28 555   v4 A:U cWW       Strong B 12 12 5 0.42 0.97 0.99 1.96 0.99 1.0 0.95 0.97 0.0 0.53 3080
73 73 16S 3 29 554   v4 U:A cWW       Strong B 28 31 19 0.64 0.97 0.99 1.96 0.99 0.99 0.76 0.79 0.0 0.54 3182
80 80 16S 3 30 553   v4 U:A cWW       Strong B 41 47 27 0.61 0.95 0.98 1.93 0.98 0.99 0.94 0.96 0.0 0.55 3238
3475 3475 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong B 1 3 0 0.0 0.5 0.99 1.49 0.98 0.99 1.91 1.81 0.0 0.77 250
3482 3482 23S 3 31 474   v4 C:G cWW       Strong B 2 3 2 0.8 0.75 1.0 1.75 1.0 1.0 1.91 1.88 0.0 0.76 249
87 87 16S 3 32 552   v4 A:U cWW       Strong B 6 7 1 0.15 0.14 0.0 0.14 0.99 0.99 1.89 1.92 0.0 0.57 3333
3489 3489 23S 3 32 473   v4 C:G cWW       Strong B 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.97 0.0 0.77 251
94 94 16S 3 33 551   v4 A:U cWW       Strong B 4 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.57 3361
101 101 16S 3 34 550   v4 C:G cWW       Strong B 8 8 3 0.38 0.29 0.99 1.28 0.99 0.99 1.89 1.92 0.0 0.59 3444
108 108 16S 3 35 549   v4 G:C cWW       Weak B 10 2 2 0.33 0.11 0.0 0.11 0.99 0.99 1.91 1.94 0.0 0.59 3467
3496 3496 23S 4 35 445   v4 G:C cWW       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.77 251
115 115 16S 3 36 548   v4 C:G cWW       Strong B 13 14 6 0.44 0.69 0.99 1.68 0.99 0.99 1.75 1.79 0.0 0.6 3539
3503 3503 23S 4 36 444   v4 G:C cWW       Strong B 3 2 1 0.4 0.69 0.98 1.68 0.98 0.98 1.66 1.71 0.0 0.77 251
122 122 16S 3 37 547   v4 U:A tWS       Weak B 4 5 0 0.0 0.02 0.0 0.02 0.99 0.99 1.94 1.91 0.0 0.61 3570
3510 3510 23S 4 37 442   v4 C:G cWW       Strong B 5 4 3 0.67 0.77 0.99 1.76 0.99 1.0 1.63 1.73 0.0 0.77 250
3517 3517 23S 4 38 441   v4 A:U cWW       Strong B 12 13 11 0.88 1.0 1.0 2.0 1.0 1.0 1.12 1.13 0.0 0.77 250
129 129 16S 4 39 403   v4 G:C cWW       Weak B 18 24 5 0.24 0.44 0.98 1.42 0.98 0.99 1.8 1.75 0.0 0.65 3830
3524 3524 23S 4 39 440   v4 G:C cWW       Strong B 12 13 8 0.64 0.99 0.99 1.98 0.99 1.0 0.13 0.19 0.0 0.77 250
136 136 16S 4 40 402   v4 C:G cWW       Strong B 12 6 4 0.44 0.5 0.99 1.49 0.99 0.99 1.89 1.88 0.0 0.67 3915
3531 3531 23S 4 40 439   v4 U:A cWW       Strong B 14 15 14 0.97 0.99 1.0 1.98 1.0 1.0 0.81 0.79 0.0 0.76 248
143 143 16S 4 41 401   v4 G:C cWW       Strong B 16 18 12 0.71 0.86 0.99 1.85 0.99 1.0 1.65 1.66 0.0 0.66 3896
3538 3538 23S 4 41 438   v4 C:G cWW       Strong B 17 15 14 0.88 1.0 1.0 2.0 1.0 1.0 0.24 0.22 0.0 0.76 250
150 150 16S 4 42 400   v4 G:C cWW       Strong B 15 12 6 0.44 0.78 0.99 1.77 0.99 1.0 1.78 1.82 0.0 0.67 3959
3545 3545 23S 4 42 437   v4 A:U cWW       Strong B 10 11 8 0.76 0.99 1.0 1.99 1.0 1.0 0.92 0.9 0.0 0.77 250
157 157 16S 4 43 399   v4 C:G cWW       Strong B 48 57 31 0.59 0.78 0.97 1.75 0.97 0.98 1.4 1.38 0.0 0.67 3943
3552 3552 23S 4 43 436   v4 G:C cWW       Strong B 13 13 11 0.85 0.82 0.92 1.74 0.92 0.92 0.49 0.41 0.0 0.76 250
164 164 16S 4 44 398   v4 A:U cWW       Strong B 34 39 29 0.8 0.95 0.98 1.93 0.98 0.98 0.96 0.9 0.0 0.68 4002
3559 3559 23S 4 44 434   v4 A:U cWW       Strong B 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.96 1.93 0.0 0.76 249
171 171 16S 4 45 396   v4 G:C cWW       Strong B 37 65 19 0.37 0.53 0.7 1.24 0.7 0.96 0.78 0.34 0.0 0.68 3969
3566 3566 23S 4 45 433   v4 G:C cWW       Strong B 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.8 1.82 0.0 0.76 249
178 178 16S 4 46 395   v4 G:C cWW       Strong B 8 3 1 0.18 0.19 0.0 0.19 0.99 0.99 1.93 1.96 0.0 0.69 4020
3573 3573 23S 4.1 46 179   v4 G:C cWW       Strong B 5 4 5 1.0 0.98 0.99 1.97 0.99 0.99 0.92 0.8 0.01 0.76 250
185 185 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong B 6 3 3 0.67 0.57 0.97 1.54 0.97 0.97 1.55 1.67 0.0 0.69 4038
3580 3580 23S 4.1 47 178   v4 C:G cWW       Strong B 1 1 0 0.0 0.0 0.0 0.0 0.99 1.0 1.91 1.97 0.0 0.76 249
192 192 16S 5 52 359   v4 C:G cWW       Strong B 37 32 25 0.72 0.92 0.98 1.89 0.98 0.99 0.88 0.89 0.0 0.7 4113
199 199 16S 5 53 358   v4 A:U cWW       Strong B 16 9 6 0.48 0.65 0.98 1.63 0.98 1.0 1.66 1.75 0.0 0.7 4095
3587 3587 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant B 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.77 252
206 206 16S 5 54 357   v4 C:G cWW       Weak B 5 2 1 0.29 0.52 1.0 1.51 1.0 1.0 1.94 1.94 0.0 0.71 4138
3594 3594 23S 5 54 116   v4 G:C cWW       Strong B 2 3 2 0.8 0.91 1.0 1.91 1.0 1.0 1.76 1.75 0.0 0.78 253
3601 3601 23S 5 55 115   v4 G:C cWW       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.77 252
213 213 16S 5 56 356   v4 U:A cWW       Weak B 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.7 4124
3608 3608 23S 5 56 114   v4 A:U cWW       Strong B 4 6 2 0.4 0.88 0.99 1.87 0.99 1.0 1.62 1.6 0.0 0.78 253
220 220 16S 5 57 355   v4 G:C cWW       Strong B 11 3 0 0.0 0.0 0.0 0.0 0.99 0.99 1.91 1.97 0.0 0.71 4194
3615 3615 23S 6 57 70   v4 C:G cWW       Strong B 2 1 1 0.67 0.97 1.0 1.97 1.0 1.0 1.44 1.46 0.0 0.77 252
227 227 16S 5 58 354   v4 C:G cWW       Weak B 5 3 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.72 4221
3622 3622 23S 6 58 69   v4 G:C cWW       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.77 252
3629 3629 23S 6 59 68   v4 U:G cWW       Strong B 8 6 3 0.43 0.26 0.62 0.88 0.52 1.0 0.66 0.95 0.0 0.78 254
234 234 16S 6 61 106   v4 G:C cWW       Strong B 9 10 2 0.21 0.29 0.99 1.29 0.99 0.99 1.91 1.9 0.0 0.75 4392
3636 3636 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong B 16 17 12 0.73 0.86 0.91 1.76 0.91 0.91 0.09 0.12 0.0 0.78 254
241 241 16S 6 62 105   v4 U:G cWW       Weak B 4 12 1 0.12 0.02 0.0 0.02 0.01 0.99 1.95 1.9 0.0 0.75 4404
3643 3643 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong B 15 12 9 0.67 0.55 0.69 1.23 0.69 0.7 0.3 0.12 0.0 0.79 257
248 248 16S 6 63 104   v4 C:G cWW       Strong B 14 12 8 0.61 0.65 0.99 1.64 0.99 1.0 1.86 1.84 0.0 0.75 4402
3650 3650 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant B 11 11 8 0.73 0.49 0.67 1.16 0.67 0.67 0.76 0.15 0.0 0.79 257
3657 3657 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong B 15 17 14 0.88 0.84 0.91 1.75 0.91 0.99 0.12 0.17 0.0 0.79 257
255 255 16S 6 66 103   v4 A:U cWW       Strong B 85 80 61 0.74 0.96 0.98 1.95 0.98 0.99 0.94 0.94 0.0 0.75 4409
3664 3664 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak B 2 1 0 0.0 0.29 0.96 1.25 0.96 0.98 1.63 1.86 0.0 0.79 257
262 262 16S 6 67 102   v4 C:G cWW       Strong B 28 35 18 0.57 0.73 0.99 1.71 0.99 0.99 1.69 1.65 0.0 0.76 4438
3671 3671 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong B 8 10 3 0.33 0.58 0.88 1.46 0.88 0.95 0.84 0.9 0.0 0.78 256
269 269 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak B 15 18 1 0.06 0.13 0.0 0.13 0.01 0.01 1.86 1.76 0.0 0.75 4427
276 276 16S 6 69 99   v4 G:C cWW       Strong B 99 116 40 0.37 0.61 0.8 1.41 0.8 0.95 0.2 -0.02 0.01 0.68 4378
283 283 16S 6 70 98   v4 U:A cWW       Strong B 158 157 96 0.61 0.81 0.88 1.69 0.88 0.97 -0.42 -0.35 0.01 0.67 4404
290 290 16S 6 73 97   v4 C:G cWW       Strong B 54 46 23 0.46 0.85 0.95 1.8 0.95 0.98 -0.68 -0.64 0.01 0.34 4435
297 297 16S 6 74 96   v4 A:U cWW       Strong B 65 69 36 0.54 0.15 0.0 0.15 0.29 0.3 -0.78 -0.9 0.0 0.0 4427
304 304 16S 6 75 95   v4 G:C cWW       Strong B 87 83 54 0.64 0.55 0.7 1.25 0.7 0.91 -0.83 -0.93 0.01 0.28 4428
311 311 16S 6 76 93   v4 G:U cWW       Strong B 114 119 41 0.35 0.46 0.58 1.04 0.58 0.77 -0.91 -0.89 0.0 0.27 4456
3678 3678 23S 7 76 110   v4 C:G cWW       Strong B 6 5 4 0.73 0.44 0.98 1.43 0.98 0.99 1.76 1.81 0.0 0.79 258
318 318 16S 6 77 92   v4 A:U cWW       Strong B 146 151 47 0.32 0.53 0.65 1.18 0.65 0.86 -0.95 -0.95 0.01 0.35 4420
3685 3685 23S 7 77 109   v4 G:C cWW       Strong B 17 17 16 0.94 0.99 1.0 1.99 1.0 1.0 0.7 0.73 0.0 0.79 258
325 325 16S 6 78 91   v4 A:U cWW       Strong B 184 170 79 0.45 0.68 0.77 1.46 0.77 0.91 -0.94 -0.95 0.0 0.44 4430
3692 3692 23S 7 78 108   v4 U:G cWW       Strong B 29 24 13 0.49 0.36 0.6 0.96 0.59 0.99 0.36 0.37 0.0 0.79 258
332 332 16S 6 79 90   v4 G:C cWW       Strong B 218 220 116 0.53 0.7 0.78 1.48 0.78 0.96 -0.7 -0.74 0.01 0.57 4439
3699 3699 23S 7 79 107   v4 C:G cWW       Strong B 18 16 11 0.65 0.85 0.96 1.8 0.96 1.0 0.8 0.91 0.0 0.79 258
339 339 16S 6 80 89   v4 A:U cWW       Strong B 254 264 172 0.66 0.85 0.9 1.75 0.9 0.97 -0.33 -0.38 0.0 0.68 4409

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");