Base-pair collective (covariation) scores

108 rows where group_code = 3 and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, PE, Cov3, DfDel

conformation 5

molecule 2

strength 1

  • Weak · 108 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3397 3397 23S 1 8 2895   v4 C:G cWW       Weak 3 22 21 5 0.23 0.62 0.75 1.37 0.75 0.99 -0.14 -0.16 0.01 0.33 251
30 30 16S 1 13 21   v4 U:G No BP       Weak 3 4 7 1 0.18 0.05 0.0 0.05 0.0 1.0 1.93 1.91 0.0 0.43 3097
107 107 16S 3 35 549   v4 G:C cWW       Weak 3 14 10 4 0.33 0.03 0.0 0.03 0.94 0.99 1.89 1.68 0.0 0.63 4555
121 121 16S 3 37 547   v4 U:A tWS       Weak 3 4 9 0 0.0 0.02 0.0 0.02 0.99 1.0 1.93 1.92 0.0 0.65 4665
128 128 16S 4 39 403   v4 G:C cWW       Weak 3 24 35 6 0.2 0.24 0.81 1.05 0.81 0.82 1.57 1.12 0.0 0.69 4942
205 205 16S 5 54 357   v4 C:G cWW       Weak 3 6 2 1 0.25 0.41 1.0 1.4 1.0 1.0 1.94 1.94 0.0 0.74 5285
212 212 16S 5 56 356   v4 U:A cWW       Weak 3 2 2 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.73 5283
226 226 16S 5 58 354   v4 C:G cWW       Weak 3 9 6 2 0.27 0.54 0.99 1.54 0.99 0.99 1.9 1.89 0.0 0.75 5381
240 240 16S 6 62 105   v4 U:G cWW       Weak 3 9 18 1 0.07 0.01 0.0 0.01 0.02 0.99 1.9 1.87 0.0 0.78 5571
3663 3663 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak 3 10 2 1 0.17 0.35 0.96 1.32 0.96 0.98 0.75 0.43 0.19 0.47 411
268 268 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak 3 27 32 7 0.24 0.04 0.0 0.04 0.21 0.21 1.18 1.55 0.0 0.78 5599
3873 3873 23S 10 158 168   v4 U:G cWW       Weak 3 11 10 5 0.48 0.06 0.0 0.06 0.29 0.97 0.62 0.08 0.0 0.56 426
4055 4055 23S 16 274 363   v4 C:G cWW       Weak 3 27 14 4 0.2 0.32 0.46 0.78 0.45 0.56 -0.9 -0.96 0.22 0.3 518
4062 4062 23S 18 281 359   v4 C:G cWW       Weak 3 26 44 9 0.26 0.34 0.46 0.81 0.44 0.61 -0.79 -0.35 0.14 0.56 516
4083 4083 23S 18 284 356   v4 U:G cWW       Weak 3 49 44 17 0.37 0.37 0.55 0.92 0.55 0.66 -0.39 -0.3 0.01 0.7 517
779 779 16S 12 292 308   v4 G:C cWW       Weak 3 19 12 2 0.13 0.43 0.9 1.33 0.9 0.99 1.55 1.33 0.0 0.86 6174
4146 4146 23S 18 293 347   v4 U:A cWW       Weak 3 31 34 14 0.43 0.36 0.72 1.08 0.72 0.77 0.12 0.24 0.04 0.76 534
4244 4244 23S 20 327 335   v4 G:C cWW       Weak 3 2 1 1 0.67 0.89 1.0 1.89 1.0 1.0 1.72 1.75 0.0 0.85 537
877 877 16S 14 342 347   v4 C:G cWW       Weak 3 10 0 0 0.0 0.19 0.0 0.19 1.0 1.0 1.83 1.97 0.01 0.84 6131
912 912 16S 15 375 388   v4 U:G No BP       Weak 3 3 21 1 0.08 0.01 0.0 0.01 0.0 0.99 1.96 1.88 0.0 0.81 5867
4272 4272 23S 21 378 396   v4 C:G cWW       Weak 3 14 8 4 0.36 0.09 0.0 0.09 0.63 1.0 0.83 1.64 0.0 0.85 538
4300 4300 23S 21 382 392   v4 A:U cWW       Weak 3 14 14 5 0.36 0.24 0.59 0.82 0.35 0.43 0.48 1.21 0.0 0.85 539
947 947 16S 16 406 436   v4 G:C cWW       Weak 3 5 9 1 0.14 0.05 0.0 0.05 0.99 1.0 1.0 0.96 0.0 0.71 6109
975 975 16S 16 416 427   v4 G:U cWW       Weak 3 26 58 3 0.07 0.05 0.0 0.05 0.17 0.97 0.66 0.32 0.0 0.69 6249
996 996 16S 16 419 424   v4 C:G cWW       Weak 3 86 23 10 0.18 0.06 0.0 0.06 0.82 1.0 0.19 0.79 0.02 0.67 6225
4461 4461 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak 3 14 17 3 0.19 0.51 0.78 1.29 0.26 0.42 0.42 0.46 0.01 0.8 525
4517 4517 23S 25.1 564 577   v4 C:G cWW       Weak 3 0 2 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.83 526
1255 1255 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak 3 2 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.81 5788
1304 1304 16S 20 584 757   v4 G:U cWW       Weak 3 2 8 0 0.0 0.0 0.0 0.0 0.0 0.99 1.97 1.93 0.0 0.83 5994
1367 1367 16S 21 594 645   v4 U:G cWW       Weak 3 121 84 24 0.23 0.07 0.0 0.07 0.38 0.96 0.04 0.42 0.0 0.69 6020
1381 1381 16S 21 597 643   v4 G:C cWW       Weak 3 4 7 0 0.0 0.02 0.0 0.02 0.99 0.99 0.96 0.96 0.0 0.7 6053
4657 4657 23S 27 600 657   v4 G:U cWW       Weak 3 2 6 1 0.25 0.01 0.0 0.01 0.35 1.0 1.89 1.05 0.0 0.82 520
1437 1437 16S 21 605 633   v4 U:G cWW       Weak 3 12 46 5 0.17 0.13 0.0 0.13 0.04 0.92 0.82 0.41 0.01 0.69 6071
1444 1444 16S 21 606 632   v4 G:U No BP       Weak 3 67 128 12 0.12 0.1 0.0 0.1 0.07 0.78 0.34 0.02 0.01 0.69 6068
4755 4755 23S 31 641 647   v4 U:G cWW       Weak 3 12 1 0 0.0 0.0 0.0 0.0 0.16 1.0 -0.14 0.22 0.0 0.5 521
1521 1521 16S 22 658 748   v4 C:G cWW       Weak 3 197 200 53 0.27 0.37 0.56 0.93 0.49 0.57 0.15 0.31 0.0 0.83 5948
1563 1563 16S 22 666 740   v4 G:U cWW       Weak 3 26 32 3 0.1 0.05 0.0 0.05 0.06 0.84 1.73 1.15 0.0 0.84 6055
4762 4762 23S 32 671 809   v4 C:G cWW       Weak 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.97 0.0 0.77 483
1626 1626 16S 23 677 713   v4 U:G cWW       Weak 3 34 76 14 0.26 0.13 0.0 0.13 0.35 0.94 1.48 1.0 0.0 0.85 6104
1675 1675 16S 23 684 706   v4 U:A cWW       Weak 3 21 15 5 0.28 0.54 0.9 1.44 0.86 0.98 1.14 1.05 0.0 0.85 6115
4825 4825 23S 33 687 775   v4 C:G No BP       Weak 3 2 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.83 524
1696 1696 16S 23 690 697   v4 G:U tSH       Weak 3 22 5 0 0.0 0.0 0.0 0.0 0.08 1.0 1.58 1.97 0.0 0.85 6118
4881 4881 23S 33 695 767   v4 G:U cWW       Weak 3 2 11 1 0.15 0.07 0.0 0.07 0.06 1.0 1.94 1.65 0.0 0.83 524
4930 4930 23S 34 703 729   v4 U:G No BP       Weak 3 20 0 0 0.0 0.01 0.0 0.01 0.23 1.0 1.23 1.98 0.0 0.83 524
4937 4937 23S 34 707 724   v4 G:U cWW       Weak 3 5 2 0 0.0 0.06 0.0 0.06 0.03 1.0 1.74 1.96 0.0 0.83 524
5133 5133 23S 37 826 831   v4 U:G cWW       Weak 3 7 1 0 0.0 0.0 0.0 0.0 0.34 1.0 1.03 1.95 0.0 0.78 493
1871 1871 16S 26 832 854   v4 G:U cWW       Weak 3 49 75 15 0.24 0.48 0.85 1.33 0.11 0.82 1.14 0.8 0.0 0.84 6004
1934 1934 16S 26.1 861 868   v4 G:C cWW       Weak 3 65 45 7 0.13 0.17 0.0 0.17 0.87 0.94 1.35 1.46 0.02 0.78 5743
2025 2025 16S 28 925 1391   v4 G:U cWW       Weak 3 5 6 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.96 0.0 0.68 4863
2081 2081 16S 28 935 1380   v4 A:U cWW       Weak 3 7 4 1 0.18 0.09 0.0 0.09 1.0 1.0 1.93 1.97 0.0 0.71 5140
2116 2116 16S 29 942 1341   v4 G:U cWW       Weak 3 7 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.84 1.98 0.01 0.73 5323
2172 2172 16S 30 950 1231   v4 U:G cWW       Weak 3 8 12 1 0.1 0.01 0.0 0.01 0.15 1.0 1.92 1.38 0.0 0.74 5342
2214 2214 16S 31 960 975   v4 U:A No BP       Weak 3 1 14 0 0.0 0.0 0.0 0.0 0.72 1.0 1.97 1.14 0.0 0.77 5561
2221 2221 16S 31 961 974   v4 U:A No BP       Weak 3 4 37 0 0.0 0.01 0.0 0.01 0.69 0.89 1.94 0.72 0.0 0.77 5546
5707 5707 23S 42 1051 1108   v4 G:U cWW       Weak 3 15 4 2 0.21 0.58 0.78 1.36 0.78 0.99 1.05 0.96 0.0 0.76 482
2452 2452 16S 34 1052 1206   v4 U:G cWW       Weak 3 5 7 0 0.0 0.0 0.0 0.0 0.0 1.0 1.95 1.94 0.0 0.75 5423
2459 2459 16S 34 1053 1205   v4 G:U No BP       Weak 3 2 13 0 0.0 0.01 0.0 0.01 0.03 1.0 1.95 1.77 0.0 0.78 5581
2480 2480 16S 34 1058 1199   v4 G:U cWW       Weak 3 1 2 0 0.0 0.03 0.0 0.03 0.0 1.0 1.93 1.97 0.0 0.78 5594
2732 2732 16S 40 1158 1178   v4 C:G No BP       Weak 3 7 9 1 0.12 0.06 0.0 0.06 0.97 0.97 1.91 1.77 0.0 0.81 5825
2739 2739 16S 40 1159 1177   v4 U:G No BP       Weak 3 65 16 5 0.12 0.14 0.0 0.14 0.07 0.94 1.29 1.71 0.0 0.81 5822
5952 5952 23S 46 1215 1234   v4 G:U cWW       Weak 3 3 1 0 0.0 0.74 0.98 1.72 0.01 0.93 1.56 1.64 0.0 0.78 495
2851 2851 16S 41 1255 1282   v4 G:C cWW       Weak 3 2 9 0 0.0 0.07 0.0 0.07 0.99 1.0 0.97 0.92 0.0 0.68 5904
3019 3019 16S 44 1401 1501   v4 G:C cWW       Weak 3 7 2 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.96 0.0 0.39 2784
6414 6414 23S 54 1415 1587   v4 U:G cWW       Weak 3 26 17 6 0.28 0.23 0.39 0.62 0.37 0.64 -0.18 -0.35 0.0 0.67 481
3152 3152 16S 44 1425 1475   v4 U:G cWW       Weak 3 98 66 15 0.18 0.24 0.49 0.73 0.17 0.57 0.33 0.54 0.0 0.61 4419
3194 3194 16S 44 1435 1466   v4 G:C cWW       Weak 3 45 63 15 0.28 0.35 0.85 1.2 0.84 0.96 1.26 1.04 0.0 0.63 4557
6512 6512 23S 56 1436 1556   v4 G:C cWW       Weak 3 19 29 8 0.33 0.18 0.0 0.18 0.7 0.83 1.0 0.71 0.0 0.77 484
6526 6526 23S 56 1440 1551   v4 U:A cWW       Weak 3 42 34 8 0.21 0.42 0.61 1.03 0.5 0.88 -0.03 0.12 0.01 0.72 483
3236 3236 16S 44 1442 1460   v4 G:C cWW       Weak 3 104 76 14 0.16 0.08 0.0 0.08 0.29 0.31 0.15 0.4 0.0 0.61 4635
6561 6561 23S 57 1445 1466   v4 G:U cWW       Weak 3 25 20 11 0.49 0.3 0.72 1.02 0.1 0.76 0.38 0.55 0.01 0.74 485
6610 6610 23S 58 1468 1524   v4 U:G cWW       Weak 3 40 27 7 0.21 0.21 0.37 0.59 0.34 0.56 -0.28 0.13 0.01 0.71 485
6645 6645 23S 58 1478 1513   v4 G:U cWW       Weak 3 13 30 6 0.28 0.18 0.0 0.18 0.43 0.8 0.09 -0.33 0.02 0.67 484
6666 6666 23S 58 1481 1510   v4 U:G cWW       Weak 3 14 22 4 0.22 0.43 0.68 1.11 0.24 0.44 -0.64 -0.53 0.0 0.0 485
6680 6680 23S 58 1483 1506   v4 G:U cWW       Weak 3 30 36 13 0.39 0.54 0.7 1.24 0.7 0.83 0.02 -0.21 0.01 0.72 485
3278 3278 16S 45 1506 1529   v4 U:G No BP       Weak 3 6 8 0 0.0 0.03 0.0 0.03 0.01 0.99 1.88 1.8 0.0 0.2 1484
3313 3313 16S 45 1511 1524   v4 G:C cWW       Weak 3 7 23 1 0.07 0.11 0.0 0.11 0.93 0.98 1.55 1.35 0.01 0.23 1707
3320 3320 16S 45 1512 1523   v4 U:G cWW       Weak 3 6 14 2 0.2 0.03 0.0 0.03 0.01 0.97 1.89 1.69 0.0 0.24 1743
6988 6988 23S 63 1707 1751   v4 G:U cWW       Weak 3 10 17 4 0.3 0.07 0.0 0.07 0.35 0.99 1.42 0.97 0.0 0.72 455
7128 7128 23S 64 1770 1982   v4 G:U cWW       Weak 3 7 15 2 0.18 0.68 0.83 1.51 0.63 0.99 0.84 0.52 0.0 0.68 432
7149 7149 23S 65 1775 1789   v4 U:A tHS       Weak 3 1 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.98 1.93 0.0 0.73 458
7226 7226 23S 66 1799 1820   v4 G:U No BP       Weak 3 0 4 0 0.0 0.01 0.0 0.01 0.41 1.0 1.83 0.9 0.0 0.72 458
7240 7240 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak 3 6 9 1 0.13 0.88 0.95 1.83 0.03 0.4 0.82 0.69 0.0 0.71 456
7296 7296 23S 68 1835 1905   v4 G:C cWW       Weak 3 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.7 439
7324 7324 23S 68 1841 1901   v4 U:A cWW       Weak 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.7 440
7331 7331 23S 68 1842 1898   v4 G:U cWW       Weak 3 1 2 0 0.0 0.0 0.0 0.0 0.01 1.0 1.98 1.93 0.0 0.7 440
7380 7380 23S 68 1851 1891   v4 U:G cWW       Weak 3 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.72 455
7471 7471 23S 69 1907 1923   v4 G:U cWW       Weak 3 0 2 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.95 0.0 0.69 438
7499 7499 23S 69 1911 1919   v4 U:A No BP       Weak 3 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.9 1.98 0.0 0.7 440
7520 7520 23S 71 1945 1961   v4 G:C cWW       Weak 3 2 1 1 0.67 0.33 0.99 1.33 0.99 0.99 1.93 1.95 0.0 0.69 436
7534 7534 23S 71 1947 1959   v4 C:G cWW       Weak 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.95 0.0 0.69 436
7674 7674 23S 73 2056 2612   v4 G:C cWW       Weak 3 2 2 0 0.0 0.96 0.98 1.94 0.98 0.98 1.05 1.01 0.0 0.65 412
7695 7695 23S 74 2065 2445   v4 C:G cWW       Weak 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.93 0.0 0.67 424
7758 7758 23S 74 2075 2434   v4 U:A No BP       Weak 3 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.69 437
7765 7765 23S 75 2077 2243   v4 A:U cWW       Weak 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 2.0 0.0 0.69 436
7891 7891 23S 76 2100 2189   v4 G:U cWW       Weak 3 11 19 3 0.2 0.23 0.79 1.02 0.2 0.98 1.26 0.97 0.0 0.69 437
7954 7954 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak 3 3 5 1 0.25 0.8 0.91 1.71 0.39 0.42 0.96 0.65 0.0 0.69 437
7989 7989 23S 77 2120 2178   v4 G:C cWW       Weak 3 9 10 3 0.32 0.59 0.82 1.41 0.82 1.0 1.09 0.86 0.0 0.69 437
8045 8045 23S 78 2136 2155   v4 G:U cWW       Weak 3 30 26 10 0.36 0.32 0.62 0.94 0.47 0.91 -0.69 -0.45 0.01 0.45 437
8094 8094 23S 78 2143 2148   v4 C:G cWW       Weak 3 7 2 0 0.0 0.06 0.0 0.06 0.94 1.0 0.15 0.26 0.01 0.45 438
8192 8192 23S 80 2249 2255   v4 U:G No BP       Weak 3 1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.94 1.97 0.0 0.69 434

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");