Base-pair collective (covariation) scores

1,348 rows where group_code = 3 sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, DfDel

conformation 12

strength 5

molecule 2

group_code 1

  • 3 · 1,348 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3348 3348 23S 1 1 2902   v4 G:C cWW       Strong 3 14 10 3 0.25 0.61 0.9 1.5 0.9 0.95 -0.19 -0.23 0.04 0.27 246
3355 3355 23S 1 2 2901   v4 G:C cWW       Strong 3 13 13 4 0.31 0.8 0.92 1.73 0.92 0.95 -0.43 -0.33 0.03 0.29 246
3362 3362 23S 1 3 2900   v4 U:A cWW       Strong 3 11 12 6 0.52 0.58 0.85 1.44 0.85 0.88 -0.4 -0.38 0.02 0.29 247
3369 3369 23S 1 4 2899   v4 U:A cWW       Strong 3 18 19 13 0.7 0.92 0.96 1.88 0.96 0.97 -0.36 -0.37 0.02 0.31 247
3376 3376 23S 1 5 2898   v4 A:U cWW       Strong 3 10 6 3 0.38 0.89 0.98 1.87 0.98 0.99 0.26 0.3 0.03 0.32 248
3383 3383 23S 1 6 2897   v4 A:U cWW       Strong 3 7 6 3 0.46 0.87 0.98 1.85 0.98 0.98 0.36 0.28 0.03 0.32 248
3390 3390 23S 1 7 2896   v4 G:C cWW       Strong 3 10 7 4 0.47 0.81 0.98 1.78 0.98 0.99 0.33 0.33 0.01 0.33 251
3397 3397 23S 1 8 2895   v4 C:G cWW       Weak 3 22 21 5 0.23 0.62 0.75 1.37 0.75 0.99 -0.14 -0.16 0.01 0.33 251
2 2 16S 1 9 25   v4 G:C cWW       Strong 3 16 9 3 0.24 0.94 0.98 1.92 0.98 0.99 0.93 1.03 0.0 0.4 2878
9 9 16S 1 10 24   v4 A:U cWW       Strong 3 20 12 5 0.31 0.92 0.97 1.89 0.97 0.99 0.76 0.96 0.0 0.41 2956
16 16 16S 1 11 23   v4 G:C cWW       Strong 3 7 4 1 0.18 0.23 1.0 1.23 1.0 1.0 1.91 1.95 0.0 0.42 3010
23 23 16S 1 12 22   v4 U:G cWW       Strong 3 11 13 6 0.5 0.93 0.98 1.91 0.3 0.98 0.95 1.07 0.0 0.43 3095
30 30 16S 1 13 21   v4 U:G No BP       Weak 3 4 7 1 0.18 0.05 0.0 0.05 0.0 1.0 1.93 1.91 0.0 0.43 3097
3404 3404 23S 2 15 525   v4 G:U cWW       Strong 3 14 19 4 0.24 0.64 0.87 1.51 0.26 0.94 0.63 0.68 0.0 0.63 399
3411 3411 23S 2 16 524   v4 C:G cWW       Strong 3 19 36 12 0.44 0.82 0.88 1.7 0.88 0.99 0.1 0.05 0.0 0.63 398
37 37 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong 3 3 6 1 0.22 0.05 0.0 0.05 0.99 0.99 1.94 1.92 0.0 0.43 3123
3418 3418 23S 2 17 523   v4 G:C cWW       Strong 3 7 12 5 0.53 0.91 0.96 1.88 0.96 0.99 0.62 0.38 0.0 0.64 402
44 44 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong 3 27 23 11 0.44 0.56 0.97 1.53 0.97 0.98 1.68 1.66 0.0 0.44 3137
3425 3425 23S 2 18 522   v4 U:A cWW       Strong 3 13 19 6 0.38 0.85 0.94 1.8 0.94 0.98 0.77 0.68 0.0 0.64 402
51 51 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong 3 32 16 1 0.04 0.72 0.96 1.68 0.96 0.96 1.39 1.41 0.0 0.44 3166
3432 3432 23S 2 19 521   v4 A:U cWW       Strong 3 25 31 12 0.43 0.67 0.76 1.44 0.76 0.96 0.01 0.19 0.0 0.64 403
3439 3439 23S 2 20 520   v4 C:G cWW       Strong 3 28 29 17 0.6 0.9 0.94 1.84 0.94 0.98 0.11 0.18 0.0 0.64 403
3446 3446 23S 2 21 519   v4 A:U cWW       Strong 3 26 32 16 0.55 0.53 0.75 1.27 0.77 0.98 0.17 0.46 0.0 0.64 403
3453 3453 23S 2 22 518   v4 C:G cWW       Strong 3 17 20 8 0.43 0.68 0.87 1.55 0.87 0.99 0.81 1.0 0.0 0.64 402
3460 3460 23S 2 23 517   v4 G:C cWW       Strong 3 10 11 5 0.48 0.81 0.96 1.77 0.96 0.99 1.29 1.1 0.0 0.64 403
3467 3467 23S 2 24 516   v4 G:C cWW       Strong 3 9 16 6 0.48 0.86 0.96 1.82 0.96 0.99 1.06 0.89 0.0 0.64 402
58 58 16S 3 27 556   v4 G:C cWW       Strong 3 16 13 8 0.55 0.94 0.99 1.93 0.99 0.99 1.09 1.28 0.0 0.51 3638
65 65 16S 3 28 555   v4 A:U cWW       Strong 3 25 29 8 0.3 0.68 0.82 1.5 0.82 0.99 0.89 0.9 0.0 0.57 4137
72 72 16S 3 29 554   v4 U:A cWW       Strong 3 43 48 27 0.59 0.97 0.98 1.95 0.98 0.99 0.43 0.55 0.01 0.58 4239
79 79 16S 3 30 553   v4 U:A cWW       Strong 3 55 60 37 0.64 0.96 0.97 1.93 0.97 0.99 0.35 0.41 0.0 0.6 4314
3474 3474 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong 3 10 13 7 0.61 0.88 0.97 1.86 0.97 0.99 0.88 0.75 0.0 0.64 403
3481 3481 23S 3 31 474   v4 C:G cWW       Strong 3 6 9 4 0.53 0.96 0.98 1.94 0.98 0.99 0.46 0.16 0.02 0.63 401
86 86 16S 3 32 552   v4 A:U cWW       Strong 3 13 14 5 0.37 0.94 0.99 1.92 0.99 0.99 1.15 1.25 0.0 0.61 4408
3488 3488 23S 3 32 473   v4 C:G cWW       Strong 3 3 3 2 0.67 0.79 0.99 1.78 0.99 0.99 1.72 1.61 0.02 0.64 403
93 93 16S 3 33 551   v4 A:U cWW       Strong 3 11 10 5 0.48 0.92 1.0 1.92 1.0 1.0 1.65 1.72 0.0 0.62 4439
100 100 16S 3 34 550   v4 C:G cWW       Strong 3 22 12 5 0.29 0.03 0.0 0.03 0.79 0.99 1.18 1.9 0.0 0.63 4520
107 107 16S 3 35 549   v4 G:C cWW       Weak 3 14 10 4 0.33 0.03 0.0 0.03 0.94 0.99 1.89 1.68 0.0 0.63 4555
3495 3495 23S 4 35 445   v4 G:C cWW       Strong 3 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.9 1.97 0.01 0.63 402
114 114 16S 3 36 548   v4 C:G cWW       Strong 3 13 15 6 0.43 0.67 0.99 1.66 0.99 0.99 1.78 1.82 0.0 0.64 4632
3502 3502 23S 4 36 444   v4 G:C cWW       Strong 3 4 4 1 0.25 0.73 0.99 1.72 0.99 0.99 1.68 1.78 0.0 0.64 403
121 121 16S 3 37 547   v4 U:A tWS       Weak 3 4 9 0 0.0 0.02 0.0 0.02 0.99 1.0 1.93 1.92 0.0 0.65 4665
3509 3509 23S 4 37 442   v4 C:G cWW       Strong 3 13 12 5 0.4 0.55 0.95 1.5 0.95 1.0 1.32 1.53 0.0 0.64 401
3516 3516 23S 4 38 441   v4 A:U cWW       Strong 3 15 16 14 0.9 1.0 1.0 2.0 1.0 1.0 0.55 0.66 0.0 0.64 401
128 128 16S 4 39 403   v4 G:C cWW       Weak 3 24 35 6 0.2 0.24 0.81 1.05 0.81 0.82 1.57 1.12 0.0 0.69 4942
3523 3523 23S 4 39 440   v4 G:C cWW       Strong 3 19 24 14 0.65 0.99 0.99 1.98 0.99 1.0 0.34 0.47 0.0 0.64 401
135 135 16S 4 40 402   v4 C:G cWW       Strong 3 30 26 20 0.71 0.95 0.99 1.94 0.99 0.99 1.19 1.24 0.0 0.7 5027
3530 3530 23S 4 40 439   v4 U:A cWW       Strong 3 25 33 20 0.69 0.96 0.98 1.95 0.98 0.99 0.3 0.3 0.0 0.63 399
142 142 16S 4 41 401   v4 G:C cWW       Strong 3 30 44 19 0.51 0.52 0.89 1.41 0.89 0.9 1.0 0.93 0.0 0.69 5009
3537 3537 23S 4 41 438   v4 C:G cWW       Strong 3 29 35 23 0.72 1.0 1.0 1.99 1.0 1.0 0.09 0.09 0.0 0.63 401
149 149 16S 4 42 400   v4 G:C cWW       Strong 3 22 21 10 0.47 0.96 0.99 1.96 0.99 1.0 1.11 1.17 0.0 0.7 5078
3544 3544 23S 4 42 437   v4 A:U cWW       Strong 3 22 29 17 0.67 0.99 0.99 1.98 0.99 1.0 0.73 0.63 0.0 0.64 401
156 156 16S 4 43 399   v4 C:G cWW       Strong 3 68 73 42 0.6 0.45 0.85 1.29 0.85 0.86 1.18 0.93 0.0 0.7 5063
3551 3551 23S 4 43 436   v4 G:C cWW       Strong 3 21 27 17 0.71 0.87 0.92 1.79 0.92 0.93 -0.09 -0.07 0.01 0.59 402
163 163 16S 4 44 398   v4 A:U cWW       Strong 3 56 56 41 0.73 0.64 0.8 1.45 0.8 0.81 0.86 0.91 0.0 0.71 5134
3558 3558 23S 4 44 434   v4 A:U cWW       Strong 3 11 26 4 0.22 0.49 0.87 1.36 0.87 0.89 0.98 0.61 0.01 0.63 400
170 170 16S 4 45 396   v4 G:C cWW       Strong 3 59 79 28 0.41 0.55 0.68 1.23 0.58 0.79 0.33 0.32 0.0 0.71 5092
3565 3565 23S 4 45 433   v4 G:C cWW       Strong 3 10 21 6 0.39 0.33 0.8 1.13 0.78 0.82 0.76 0.52 0.03 0.62 401
177 177 16S 4 46 395   v4 G:C cWW       Strong 3 26 17 10 0.47 0.81 0.96 1.77 0.96 1.0 1.19 1.17 0.0 0.72 5159
3572 3572 23S 4.1 46 179   v4 G:C cWW       Strong 3 6 23 6 0.41 0.98 0.99 1.98 0.99 0.99 -0.28 0.28 0.17 0.47 402
184 184 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong 3 12 9 9 0.86 0.91 0.97 1.89 0.97 0.98 0.97 1.0 0.0 0.72 5173
3579 3579 23S 4.1 47 178   v4 C:G cWW       Strong 3 5 4 2 0.44 0.4 0.98 1.38 0.98 1.0 1.72 1.79 0.0 0.63 399
191 191 16S 5 52 359   v4 C:G cWW       Strong 3 43 39 31 0.76 0.95 0.98 1.94 0.98 0.99 0.5 0.48 0.0 0.73 5252
198 198 16S 5 53 358   v4 A:U cWW       Strong 3 19 12 8 0.52 0.93 0.98 1.92 0.98 0.99 1.0 1.08 0.0 0.73 5240
3586 3586 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant 3 2 2 0 0.0 0.0 0.0 0.0 0.02 0.02 1.9 1.86 0.0 0.64 405
205 205 16S 5 54 357   v4 C:G cWW       Weak 3 6 2 1 0.25 0.41 1.0 1.4 1.0 1.0 1.94 1.94 0.0 0.74 5285
3593 3593 23S 5 54 116   v4 G:C cWW       Strong 3 2 7 2 0.44 0.1 0.0 0.1 0.78 1.0 1.8 1.14 0.0 0.64 406
3600 3600 23S 5 55 115   v4 G:C cWW       Strong 3 7 4 2 0.36 0.95 0.99 1.93 0.99 1.0 1.2 1.16 0.0 0.64 405
212 212 16S 5 56 356   v4 U:A cWW       Weak 3 2 2 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.73 5283
3607 3607 23S 5 56 114   v4 A:U cWW       Strong 3 12 17 12 0.83 0.97 0.99 1.96 0.99 1.0 1.1 1.12 0.0 0.64 406
219 219 16S 5 57 355   v4 G:C cWW       Strong 3 11 4 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 1.96 0.0 0.74 5351
3614 3614 23S 6 57 70   v4 C:G cWW       Strong 3 2 1 1 0.67 0.97 1.0 1.97 1.0 1.0 1.56 1.53 0.0 0.64 406
226 226 16S 5 58 354   v4 C:G cWW       Weak 3 9 6 2 0.27 0.54 0.99 1.54 0.99 0.99 1.9 1.89 0.0 0.75 5381
3621 3621 23S 6 58 69   v4 G:C cWW       Strong 3 2 3 1 0.4 0.2 0.0 0.2 0.99 1.0 1.93 1.84 0.0 0.64 406
3628 3628 23S 6 59 68   v4 U:G cWW       Strong 3 14 9 5 0.43 0.14 0.0 0.14 0.59 1.0 0.68 1.06 0.0 0.65 408
233 233 16S 6 61 106   v4 G:C cWW       Strong 3 10 21 3 0.19 0.21 0.99 1.19 0.99 0.99 1.92 1.87 0.0 0.77 5558
3635 3635 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong 3 22 20 13 0.62 0.85 0.91 1.76 0.91 0.91 0.29 -0.76 0.19 0.46 407
240 240 16S 6 62 105   v4 U:G cWW       Weak 3 9 18 1 0.07 0.01 0.0 0.01 0.02 0.99 1.9 1.87 0.0 0.78 5571
3642 3642 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong 3 23 14 10 0.54 0.57 0.72 1.29 0.72 0.73 0.41 -0.73 0.19 0.47 410
247 247 16S 6 63 104   v4 C:G cWW       Strong 3 34 21 13 0.47 0.07 0.0 0.07 0.82 0.82 1.5 0.85 0.0 0.0 5580
3649 3649 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant 3 15 11 8 0.61 0.45 0.67 1.12 0.59 0.59 0.89 -0.72 0.19 0.47 411
3656 3656 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong 3 15 17 14 0.88 0.87 0.92 1.78 0.92 0.99 0.14 -0.78 0.19 0.47 411
254 254 16S 6 66 103   v4 A:U cWW       Strong 3 102 100 69 0.68 0.9 0.96 1.85 0.96 0.97 0.92 0.9 0.0 0.78 5579
3663 3663 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak 3 10 2 1 0.17 0.35 0.96 1.32 0.96 0.98 0.75 0.43 0.19 0.47 411
261 261 16S 6 67 102   v4 C:G cWW       Strong 3 46 54 32 0.64 0.93 0.98 1.92 0.98 0.99 1.07 1.05 0.0 0.78 5613
3670 3670 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong 3 17 20 6 0.32 0.34 0.74 1.08 0.74 0.82 0.84 0.45 0.0 0.64 411
268 268 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak 3 27 32 7 0.24 0.04 0.0 0.04 0.21 0.21 1.18 1.55 0.0 0.78 5599
275 275 16S 6 69 99   v4 G:C cWW       Strong 3 99 116 40 0.37 0.61 0.8 1.41 0.8 0.95 -0.37 -0.53 0.01 0.55 5600
282 282 16S 6 70 98   v4 U:A cWW       Strong 3 158 157 96 0.61 0.81 0.88 1.69 0.88 0.97 -0.83 -0.76 0.01 0.54 5626
289 289 16S 6 73 97   v4 C:G cWW       Strong 3 54 46 23 0.46 0.85 0.95 1.8 0.95 0.98 -0.7 -0.67 0.01 0.28 5657
296 296 16S 6 74 96   v4 A:U cWW       Strong 3 65 69 36 0.54 0.87 0.94 1.8 0.94 0.97 -0.71 -0.84 0.05 0.19 5649
303 303 16S 6 75 95   v4 G:C cWW       Strong 3 87 83 54 0.64 0.55 0.7 1.25 0.7 0.91 -0.78 -0.86 0.01 0.23 5650
310 310 16S 6 76 93   v4 G:U cWW       Strong 3 114 119 41 0.35 0.47 0.58 1.04 0.58 0.77 -0.83 -0.82 0.0 0.22 5677
3677 3677 23S 7 76 110   v4 C:G cWW       Strong 3 14 7 4 0.38 0.12 0.0 0.12 0.75 0.9 0.98 1.09 0.0 0.64 413
317 317 16S 6 77 92   v4 A:U cWW       Strong 3 149 152 47 0.31 0.54 0.65 1.19 0.65 0.86 -0.93 -0.92 0.01 0.29 5641
3684 3684 23S 7 77 109   v4 G:C cWW       Strong 3 25 24 19 0.78 0.71 0.84 1.55 0.81 0.82 -0.09 0.24 0.02 0.63 413
324 324 16S 6 78 91   v4 A:U cWW       Strong 3 188 175 83 0.46 0.69 0.78 1.47 0.78 0.91 -0.98 -0.97 0.0 0.37 5652
3691 3691 23S 7 78 108   v4 U:G cWW       Strong 3 34 34 18 0.53 0.35 0.54 0.89 0.63 0.95 -0.6 0.18 0.14 0.52 413
331 331 16S 6 79 90   v4 G:C cWW       Strong 3 226 225 120 0.53 0.7 0.78 1.48 0.78 0.96 -0.9 -0.93 0.01 0.48 5662
3698 3698 23S 7 79 107   v4 C:G cWW       Strong 3 32 24 16 0.57 0.54 0.76 1.3 0.76 0.8 0.04 0.35 0.01 0.64 413
338 338 16S 6 80 89   v4 A:U cWW       Strong 3 263 272 179 0.67 0.85 0.91 1.76 0.91 0.97 -0.74 -0.78 0.0 0.58 5625

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");