Base-pair collective (covariation) scores

105 rows where conformation = "No BP" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, Xch, PE, PES, Cov1, Cov3, C1+C3, WCGU, DfDel

group_code 7

  • 3 15
  • A 15
  • B 15
  • C 15
  • E 15
  • M 15
  • T 15

molecule 2

strength 1

  • Weak · 105 ✖

conformation 1

  • No BP · 105 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
29 29 16S 1 13 21   v4 U:G No BP       Weak T 14 68 3 0.07 0.02 0.0 0.02 0.09 0.98 1.8 1.5 0.0 0.46 3890
30 30 16S 1 13 21   v4 U:G No BP       Weak 3 4 7 1 0.18 0.05 0.0 0.05 0.0 1.0 1.93 1.91 0.0 0.43 3097
31 31 16S 1 13 21   v4 U:G No BP       Weak B 4 6 1 0.2 0.05 0.0 0.05 0.0 0.99 1.94 1.89 0.0 0.36 2128
32 32 16S 1 13 21   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.58 154
33 33 16S 1 13 21   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.95 2.0 1.66 0.0 0.69 126
34 34 16S 1 13 21   v4 U:G No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.9 1.97 0.01 0.77 815
35 35 16S 1 13 21   v4 U:G No BP       Weak M 10 59 2 0.06 0.16 0.0 0.16 0.51 0.9 1.4 0.89 0.0 0.57 669
911 911 16S 15 375 388   v4 U:G No BP       Weak T 10 30 4 0.2 0.05 0.0 0.05 0.01 0.99 1.94 1.68 0.02 0.8 6852
912 912 16S 15 375 388   v4 U:G No BP       Weak 3 3 21 1 0.08 0.01 0.0 0.01 0.0 0.99 1.96 1.88 0.0 0.81 5867
913 913 16S 15 375 388   v4 U:G No BP       Weak B 2 17 0 0.0 0.0 0.0 0.0 0.0 0.99 1.97 1.89 0.0 0.79 4613
914 914 16S 15 375 388   v4 U:G No BP       Weak A 0 3 0 0.0 0.0 0.0 0.0 0.02 1.0 1.81 1.85 0.02 0.84 228
915 915 16S 15 375 388   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 164
916 916 16S 15 375 388   v4 U:G No BP       Weak E 1 1 1 1.0 0.12 0.0 0.12 0.0 1.0 1.93 1.84 0.01 0.96 1026
917 917 16S 15 375 388   v4 U:G No BP       Weak M 7 8 3 0.4 0.09 0.0 0.09 0.06 0.99 1.82 0.84 0.11 0.71 829
1443 1443 16S 21 606 632   v4 G:U No BP       Weak T 89 148 18 0.15 0.15 0.0 0.15 0.09 0.78 -0.06 -0.3 0.01 0.61 7251
1444 1444 16S 21 606 632   v4 G:U No BP       Weak 3 67 128 12 0.12 0.1 0.0 0.1 0.07 0.78 0.34 0.02 0.01 0.69 6068
1445 1445 16S 21 606 632   v4 G:U No BP       Weak B 64 114 12 0.14 0.1 0.0 0.1 0.07 0.79 1.25 0.72 0.01 0.8 4794
1446 1446 16S 21 606 632   v4 G:U No BP       Weak A 3 14 0 0.0 0.08 0.0 0.08 0.07 0.59 0.86 1.0 0.01 0.87 232
1447 1447 16S 21 606 632   v4 G:U No BP       Weak C 15 15 5 0.33 0.58 0.77 1.35 0.77 0.91 0.52 0.46 0.0 0.93 170
1448 1448 16S 21 606 632   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
1449 1449 16S 21 606 632   v4 G:U No BP       Weak M 7 5 1 0.17 0.01 0.0 0.01 0.01 0.03 -0.25 -0.23 0.0 0.0 1021
4824 4824 23S 33 687 775   v4 C:G No BP       Weak T 11 7 0 0.0 0.29 0.97 1.27 0.97 0.98 1.72 1.8 0.0 0.84 886
4825 4825 23S 33 687 775   v4 C:G No BP       Weak 3 2 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.83 524
4826 4826 23S 33 687 775   v4 C:G No BP       Weak B 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.93 0.0 0.86 282
4827 4827 23S 33 687 775   v4 C:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
4828 4828 23S 33 687 775   v4 C:G No BP       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.95 0.95 1.86 1.81 0.0 0.97 100
4829 4829 23S 33 687 775   v4 C:G No BP       Weak E 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 1.95 0.0 0.78 205
4830 4830 23S 33 687 775   v4 C:G No BP       Weak M 8 4 0 0.0 0.4 0.94 1.34 0.94 0.98 1.34 1.62 0.01 0.83 262
4929 4929 23S 34 703 729   v4 U:G No BP       Weak T 40 4 1 0.04 0.02 0.0 0.02 0.17 0.93 0.55 1.49 0.01 0.79 887
4930 4930 23S 34 703 729   v4 U:G No BP       Weak 3 20 0 0 0.0 0.01 0.0 0.01 0.23 1.0 1.23 1.98 0.0 0.83 524
4931 4931 23S 34 703 729   v4 U:G No BP       Weak B 1 0 0 0.0 0.0 0.0 0.0 0.02 1.0 1.87 2.0 0.0 0.86 282
4932 4932 23S 34 703 729   v4 U:G No BP       Weak A 3 0 0 0.0 0.0 0.0 0.0 0.32 1.0 1.09 2.0 0.0 0.9 37
4933 4933 23S 34 703 729   v4 U:G No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.97 100
4934 4934 23S 34 703 729   v4 U:G No BP       Weak E 16 0 0 0.0 0.01 0.0 0.01 0.49 0.99 1.0 1.96 0.0 0.78 205
4935 4935 23S 34 703 729   v4 U:G No BP       Weak M 20 4 1 0.08 0.04 0.0 0.04 0.09 0.73 -0.3 0.73 0.04 0.64 263
2213 2213 16S 31 960 975   v4 U:A No BP       Weak T 10 32 1 0.05 0.39 0.77 1.16 0.77 0.99 1.35 0.64 0.0 0.81 6871
2214 2214 16S 31 960 975   v4 U:A No BP       Weak 3 1 14 0 0.0 0.0 0.0 0.0 0.72 1.0 1.97 1.14 0.0 0.77 5561
2215 2215 16S 31 960 975   v4 U:A No BP       Weak B 1 10 0 0.0 0.0 0.0 0.0 0.92 1.0 1.97 1.59 0.0 0.74 4347
2216 2216 16S 31 960 975   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.79 208
2217 2217 16S 31 960 975   v4 U:A No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.8 0.0 0.89 162
2218 2218 16S 31 960 975   v4 U:A No BP       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.01 1.0 1.97 1.94 0.0 0.95 1006
2219 2219 16S 31 960 975   v4 U:A No BP       Weak M 9 16 1 0.08 0.61 0.96 1.56 0.96 0.96 1.53 1.43 0.0 0.99 1153
2220 2220 16S 31 961 974   v4 U:A No BP       Weak T 48 99 4 0.05 0.07 0.0 0.07 0.67 0.84 1.73 0.59 0.0 0.8 6856
2221 2221 16S 31 961 974   v4 U:A No BP       Weak 3 4 37 0 0.0 0.01 0.0 0.01 0.69 0.89 1.94 0.72 0.0 0.77 5546
2222 2222 16S 31 961 974   v4 U:A No BP       Weak B 1 28 0 0.0 0.01 0.0 0.01 0.87 0.87 1.95 1.32 0.0 0.74 4330
2223 2223 16S 31 961 974   v4 U:A No BP       Weak A 3 2 0 0.0 0.0 0.0 0.0 0.07 0.85 1.79 1.22 0.0 0.79 209
2224 2224 16S 31 961 974   v4 U:A No BP       Weak C 1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.83 1.95 0.0 0.9 163
2225 2225 16S 31 961 974   v4 U:A No BP       Weak E 0 7 0 0.0 0.12 0.0 0.12 0.03 0.99 1.94 1.78 0.0 0.95 1007
2226 2226 16S 31 961 974   v4 U:A No BP       Weak M 43 61 4 0.08 0.28 0.67 0.96 0.56 0.56 1.14 0.69 0.0 0.99 1151
2458 2458 16S 34 1053 1205   v4 G:U No BP       Weak T 7 20 0 0.0 0.01 0.0 0.01 0.18 1.0 1.35 1.79 0.0 0.81 6891
2459 2459 16S 34 1053 1205   v4 G:U No BP       Weak 3 2 13 0 0.0 0.01 0.0 0.01 0.03 1.0 1.95 1.77 0.0 0.78 5581
2460 2460 16S 34 1053 1205   v4 G:U No BP       Weak B 2 12 0 0.0 0.01 0.0 0.01 0.04 1.0 1.95 1.75 0.0 0.75 4383
2461 2461 16S 34 1053 1205   v4 G:U No BP       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.92 0.0 0.75 197
2462 2462 16S 34 1053 1205   v4 G:U No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 163
2463 2463 16S 34 1053 1205   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.99 1.98 0.0 0.94 997
2464 2464 16S 34 1053 1205   v4 G:U No BP       Weak M 5 6 0 0.0 0.06 0.0 0.06 0.92 0.99 1.55 1.9 0.0 0.99 1152
2731 2731 16S 40 1158 1178   v4 C:G No BP       Weak T 12 156 4 0.05 0.13 0.0 0.13 0.96 0.97 0.97 1.02 0.12 0.71 7138
2732 2732 16S 40 1158 1178   v4 C:G No BP       Weak 3 7 9 1 0.12 0.06 0.0 0.06 0.97 0.97 1.91 1.77 0.0 0.81 5825
2733 2733 16S 40 1158 1178   v4 C:G No BP       Weak B 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.79 4605
2734 2734 16S 40 1158 1178   v4 C:G No BP       Weak A 1 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 2.0 0.0 0.74 195
2735 2735 16S 40 1158 1178   v4 C:G No BP       Weak C 0 2 0 0.0 0.11 0.0 0.11 0.95 0.98 1.38 1.71 0.03 0.89 167
2736 2736 16S 40 1158 1178   v4 C:G No BP       Weak E 5 8 1 0.15 0.06 0.0 0.06 0.81 0.84 1.71 1.23 0.01 0.96 1019
2737 2737 16S 40 1158 1178   v4 C:G No BP       Weak M 5 145 3 0.04 0.03 0.0 0.03 0.05 0.05 -0.32 0.02 0.0 0.0 1152
2738 2738 16S 40 1159 1177   v4 U:G No BP       Weak T 80 167 11 0.09 0.16 0.0 0.16 0.07 0.94 0.49 1.0 0.12 0.71 7135
2739 2739 16S 40 1159 1177   v4 U:G No BP       Weak 3 65 16 5 0.12 0.14 0.0 0.14 0.07 0.94 1.29 1.71 0.0 0.81 5822
2740 2740 16S 40 1159 1177   v4 U:G No BP       Weak B 43 2 1 0.04 0.0 0.0 0.0 0.06 0.99 1.63 1.97 0.0 0.78 4600
2741 2741 16S 40 1159 1177   v4 U:G No BP       Weak A 7 1 0 0.0 0.01 0.0 0.01 0.53 0.99 1.0 1.92 0.0 0.75 198
2742 2742 16S 40 1159 1177   v4 U:G No BP       Weak C 7 3 2 0.4 0.17 0.0 0.17 0.04 0.97 1.39 1.74 0.02 0.9 167
2743 2743 16S 40 1159 1177   v4 U:G No BP       Weak E 15 13 4 0.29 0.31 0.77 1.07 0.03 0.69 0.72 1.0 0.01 0.96 1018
2744 2744 16S 40 1159 1177   v4 U:G No BP       Weak M 8 148 4 0.05 0.02 0.0 0.02 0.01 0.03 -0.32 0.0 0.0 0.0 1152
3277 3277 16S 45 1506 1529   v4 U:G No BP       Weak T 7 19 0 0.0 0.01 0.0 0.01 0.05 0.99 1.9 1.58 0.0 0.26 2260
3278 3278 16S 45 1506 1529   v4 U:G No BP       Weak 3 6 8 0 0.0 0.03 0.0 0.03 0.01 0.99 1.88 1.8 0.0 0.2 1484
3279 3279 16S 45 1506 1529   v4 U:G No BP       Weak B 3 5 0 0.0 0.08 0.0 0.08 0.0 0.98 1.92 1.86 0.0 0.12 718
3280 3280 16S 45 1506 1529   v4 U:G No BP       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.0 0.95 2.0 1.71 0.0 0.3 80
3281 3281 16S 45 1506 1529   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 108
3282 3282 16S 45 1506 1529   v4 U:G No BP       Weak E 3 2 0 0.0 0.0 0.0 0.0 0.03 1.0 1.83 1.8 0.01 0.64 684
3283 3283 16S 45 1506 1529   v4 U:G No BP       Weak M 1 10 0 0.0 0.0 0.0 0.0 0.16 0.99 1.99 1.27 0.0 0.58 672
7225 7225 23S 66 1799 1820   v4 G:U No BP       Weak T 3 10 1 0.15 0.01 0.0 0.01 0.24 0.99 1.63 0.93 0.0 0.78 842
7226 7226 23S 66 1799 1820   v4 G:U No BP       Weak 3 0 4 0 0.0 0.01 0.0 0.01 0.41 1.0 1.83 0.9 0.0 0.72 458
7227 7227 23S 66 1799 1820   v4 G:U No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.8 262
7228 7228 23S 66 1799 1820   v4 G:U No BP       Weak A 0 2 0 0.0 0.0 0.0 0.0 0.9 1.0 2.0 1.54 0.0 1.0 41
7229 7229 23S 66 1799 1820   v4 G:U No BP       Weak C 0 3 0 0.0 0.0 0.0 0.0 0.01 0.97 2.0 1.73 0.0 0.98 101
7230 7230 23S 66 1799 1820   v4 G:U No BP       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.78 0.0 0.58 155
7231 7231 23S 66 1799 1820   v4 G:U No BP       Weak M 3 3 1 0.33 0.12 0.0 0.12 0.03 1.0 1.27 1.37 0.0 0.83 283
7498 7498 23S 69 1911 1919   v4 U:A No BP       Weak T 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.86 0.0 0.8 852
7499 7499 23S 69 1911 1919   v4 U:A No BP       Weak 3 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.9 1.98 0.0 0.7 440
7500 7500 23S 69 1911 1919   v4 U:A No BP       Weak B 2 0 0 0.0 0.0 0.0 0.0 0.98 0.98 1.83 1.95 0.0 0.74 244
7501 7501 23S 69 1911 1919   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7502 7502 23S 69 1911 1919   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7503 7503 23S 69 1911 1919   v4 U:A No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.59 155
7504 7504 23S 69 1911 1919   v4 U:A No BP       Weak M 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.71 1.71 0.0 0.96 311
7757 7757 23S 74 2075 2434   v4 U:A No BP       Weak T 4 8 3 0.5 0.05 0.0 0.05 0.98 0.98 1.94 1.83 0.0 0.81 845
7758 7758 23S 74 2075 2434   v4 U:A No BP       Weak 3 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.69 437
7759 7759 23S 74 2075 2434   v4 U:A No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
7760 7760 23S 74 2075 2434   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7761 7761 23S 74 2075 2434   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96 99
7762 7762 23S 74 2075 2434   v4 U:A No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.86 0.0 0.59 155
7763 7763 23S 74 2075 2434   v4 U:A No BP       Weak M 4 7 3 0.55 0.06 0.0 0.06 0.95 0.96 1.85 1.67 0.0 0.99 309
8191 8191 23S 80 2249 2255   v4 U:G No BP       Weak T 2 10 1 0.17 0.11 0.0 0.11 0.04 0.99 1.91 1.68 0.0 0.81 845
8192 8192 23S 80 2249 2255   v4 U:G No BP       Weak 3 1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.94 1.97 0.0 0.69 434

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");