Base-pair collective (covariation) scores

31 rows where conformation = "No BP" and group_code = "M" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, Seq

strength 5

molecule 2

group_code 1

conformation 1

  • No BP · 31 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
35 35 16S 1 13 21   v4 U:G No BP       Weak M 10 59 2 0.06 0.16 0.0 0.16 0.51 0.9 1.4 0.89 0.0 0.57 669
917 917 16S 15 375 388   v4 U:G No BP       Weak M 7 8 3 0.4 0.09 0.0 0.09 0.06 0.99 1.82 0.84 0.11 0.71 829
1302 1302 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong M 31 39 5 0.14 0.07 0.0 0.07 0.68 0.81 -0.31 0.37 0.2 0.53 886
1449 1449 16S 21 606 632   v4 G:U No BP       Weak M 7 5 1 0.17 0.01 0.0 0.01 0.01 0.03 -0.25 -0.23 0.0 0.0 1021
4830 4830 23S 33 687 775   v4 C:G No BP       Weak M 8 4 0 0.0 0.4 0.94 1.34 0.94 0.98 1.34 1.62 0.01 0.83 262
4837 4837 23S 33 688 774   v4 U:G No BP       Significant M 4 7 3 0.55 0.54 0.96 1.5 0.96 0.98 1.56 1.41 0.01 0.83 262
4935 4935 23S 34 703 729   v4 U:G No BP       Weak M 20 4 1 0.08 0.04 0.0 0.04 0.09 0.73 -0.3 0.73 0.04 0.64 263
2135 2135 16S 30 944 1237   v4 G:C No BP       No Support M 1 3 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 1.9 0.0 0.99 1152
2219 2219 16S 31 960 975   v4 U:A No BP       Weak M 9 16 1 0.08 0.61 0.96 1.56 0.96 0.96 1.53 1.43 0.0 0.99 1153
2226 2226 16S 31 961 974   v4 U:A No BP       Weak M 43 61 4 0.08 0.28 0.67 0.96 0.56 0.56 1.14 0.69 0.0 0.99 1151
2464 2464 16S 34 1053 1205   v4 G:U No BP       Weak M 5 6 0 0.0 0.06 0.0 0.06 0.92 0.99 1.55 1.9 0.0 0.99 1152
2527 2527 16S 34 1064 1192   v4 G:C No BP       Strong M 43 31 9 0.24 0.26 0.54 0.8 0.54 0.55 0.55 0.73 0.0 0.99 1150
2737 2737 16S 40 1158 1178   v4 C:G No BP       Weak M 5 145 3 0.04 0.03 0.0 0.03 0.05 0.05 -0.32 0.02 0.0 0.0 1152
2744 2744 16S 40 1159 1177   v4 U:G No BP       Weak M 8 148 4 0.05 0.02 0.0 0.02 0.01 0.03 -0.32 0.0 0.0 0.0 1152
6440 6440 23S 55 1420 1578   v4 A:U No BP       Strong M 2 2 2 1.0 0.88 0.93 1.8 0.93 0.93 -0.29 -0.31 0.0 0.04 276
3283 3283 16S 45 1506 1529   v4 U:G No BP       Weak M 1 10 0 0.0 0.0 0.0 0.0 0.16 0.99 1.99 1.27 0.0 0.58 672
6748 6748 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong M 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.03 -0.06 0.0 0.0 276
7231 7231 23S 66 1799 1820   v4 G:U No BP       Weak M 3 3 1 0.33 0.12 0.0 0.12 0.03 1.0 1.27 1.37 0.0 0.83 283
7504 7504 23S 69 1911 1919   v4 U:A No BP       Weak M 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.71 1.71 0.0 0.96 311
7518 7518 23S 71 1935 1962   v4 G:C No BP       Strong M 16 19 6 0.34 0.54 0.74 1.28 0.74 0.86 0.91 0.73 0.0 0.99 310
7763 7763 23S 74 2075 2434   v4 U:A No BP       Weak M 4 7 3 0.55 0.06 0.0 0.06 0.95 0.96 1.85 1.67 0.0 0.99 309
7973 7973 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong M 5 2 2 0.57 0.24 0.54 0.78 0.24 0.24 -0.54 -0.42 0.0 0.13 309
7980 7980 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong M 3 2 0 0.0 0.21 0.71 0.93 0.71 0.84 -0.42 -0.42 0.01 0.12 309
7987 7987 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong M 4 7 3 0.55 0.42 0.66 1.07 0.66 0.68 -0.47 -0.54 0.0 0.13 309
8197 8197 23S 80 2249 2255   v4 U:G No BP       Weak M 1 8 1 0.22 0.12 0.0 0.12 0.11 0.98 1.88 1.4 0.0 0.99 309
8316 8316 23S 84 2296 2322   v4 U:A No BP       Strong M 4 6 3 0.6 0.4 0.85 1.25 0.85 0.9 -0.4 -0.46 0.01 0.13 309
8687 8687 23S 90 2511 2577   v4 U:A No BP       No Support M 2 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.84 2.0 0.0 0.84 263
8932 8932 23S 94 2637 2781   v4 U:A No BP       Strong M 5 8 2 0.31 0.46 0.7 1.16 0.7 0.72 -0.58 -0.62 0.12 0.13 227
9247 9247 23S 98 2796 2800   v4 U:A No BP       Strong M 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 219
9254 9254 23S 99 2808 2891   v4 G:U No BP   3°: base pair   ??? M 0 8 0 0.0 0.14 0.0 0.14 0.23 0.23 -0.32 -0.6 0.6 0.04 44
9401 9401 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong M 4 3 0 0.0 0.17 0.0 0.17 0.08 0.19 0.16 -0.75 0.03 0.08 45

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");