Base-pair collective (covariation) scores

31 rows where conformation = "No BP" and group_code = "E" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

strength 5

molecule 2

group_code 1

conformation 1

  • No BP · 31 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
34 34 16S 1 13 21   v4 U:G No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.9 1.97 0.01 0.77 815
916 916 16S 15 375 388   v4 U:G No BP       Weak E 1 1 1 1.0 0.12 0.0 0.12 0.0 1.0 1.93 1.84 0.01 0.96 1026
1301 1301 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong E 2 4 0 0.0 0.0 0.0 0.0 0.01 0.02 1.95 1.82 0.0 0.98 1032
1448 1448 16S 21 606 632   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
4829 4829 23S 33 687 775   v4 C:G No BP       Weak E 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 1.95 0.0 0.78 205
4836 4836 23S 33 688 774   v4 U:G No BP       Significant E 0 3 0 0.0 0.0 0.0 0.0 0.89 0.9 2.0 1.42 0.0 0.78 205
4934 4934 23S 34 703 729   v4 U:G No BP       Weak E 16 0 0 0.0 0.01 0.0 0.01 0.49 0.99 1.0 1.96 0.0 0.78 205
2134 2134 16S 30 944 1237   v4 G:C No BP       No Support E 0 0 0 0.0 0.5 1.0 1.5 1.0 1.0 1.92 1.98 0.01 0.92 972
2218 2218 16S 31 960 975   v4 U:A No BP       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.01 1.0 1.97 1.94 0.0 0.95 1006
2225 2225 16S 31 961 974   v4 U:A No BP       Weak E 0 7 0 0.0 0.12 0.0 0.12 0.03 0.99 1.94 1.78 0.0 0.95 1007
2463 2463 16S 34 1053 1205   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.99 1.98 0.0 0.94 997
2526 2526 16S 34 1064 1192   v4 G:C No BP       Strong E 7 8 5 0.67 0.44 0.94 1.38 0.02 0.05 1.45 1.45 0.0 0.95 1000
2736 2736 16S 40 1158 1178   v4 C:G No BP       Weak E 5 8 1 0.15 0.06 0.0 0.06 0.81 0.84 1.71 1.23 0.01 0.96 1019
2743 2743 16S 40 1159 1177   v4 U:G No BP       Weak E 15 13 4 0.29 0.31 0.77 1.07 0.03 0.69 0.72 1.0 0.01 0.96 1018
6439 6439 23S 55 1420 1578   v4 A:U No BP       Strong E 10 12 8 0.73 0.95 0.98 1.93 0.98 0.98 0.11 0.15 0.01 0.65 179
3282 3282 16S 45 1506 1529   v4 U:G No BP       Weak E 3 2 0 0.0 0.0 0.0 0.0 0.03 1.0 1.83 1.8 0.01 0.64 684
6747 6747 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong E 6 6 5 0.83 0.82 0.95 1.77 0.82 0.99 0.46 0.57 0.01 0.63 180
7230 7230 23S 66 1799 1820   v4 G:U No BP       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.78 0.0 0.58 155
7503 7503 23S 69 1911 1919   v4 U:A No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.59 155
7517 7517 23S 71 1935 1962   v4 G:C No BP       Strong E 2 1 1 0.67 0.5 0.99 1.49 0.99 0.99 1.89 1.94 0.0 0.59 155
7762 7762 23S 74 2075 2434   v4 U:A No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.86 0.0 0.59 155
7972 7972 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong E 3 3 2 0.67 0.58 0.97 1.55 0.05 0.08 1.74 1.57 0.0 0.59 155
7979 7979 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong E 2 4 2 0.67 0.54 0.96 1.5 0.96 0.99 1.68 1.57 0.0 0.59 155
7986 7986 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong E 4 3 1 0.29 0.29 0.94 1.22 0.94 0.94 1.48 1.56 0.0 0.59 155
8196 8196 23S 80 2249 2255   v4 U:G No BP       Weak E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.98 1.86 2.0 0.0 0.59 155
8315 8315 23S 84 2296 2322   v4 U:A No BP       Strong E 1 2 0 0.0 0.04 0.0 0.04 0.85 0.85 1.72 1.45 0.0 0.59 155
8686 8686 23S 90 2511 2577   v4 U:A No BP       No Support E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.51 135
8931 8931 23S 94 2637 2781   v4 U:A No BP       Strong E 10 14 7 0.58 0.5 0.84 1.34 0.84 0.87 0.97 0.75 0.0 0.47 125
9246 9246 23S 98 2796 2800   v4 U:A No BP       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 126
9253 9253 23S 99 2808 2891   v4 G:U No BP   3°: base pair   ??? E 2 5 1 0.29 0.32 0.52 0.83 0.3 0.63 -0.85 0.46 0.26 0.1 84
9400 9400 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong E 4 0 0 0.0 0.33 0.96 1.29 0.0 0.02 1.34 1.06 0.03 0.38 109

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");