Base-pair collective (covariation) scores

31 rows where conformation = "No BP" and group_code = "B" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

strength 5

molecule 2

group_code 1

conformation 1

  • No BP · 31 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
31 31 16S 1 13 21   v4 U:G No BP       Weak B 4 6 1 0.2 0.05 0.0 0.05 0.0 0.99 1.94 1.89 0.0 0.36 2128
913 913 16S 15 375 388   v4 U:G No BP       Weak B 2 17 0 0.0 0.0 0.0 0.0 0.0 0.99 1.97 1.89 0.0 0.79 4613
1298 1298 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong B 54 47 17 0.34 0.5 0.84 1.34 0.14 0.82 1.11 1.08 0.0 0.8 4697
1445 1445 16S 21 606 632   v4 G:U No BP       Weak B 64 114 12 0.14 0.1 0.0 0.1 0.07 0.79 1.25 0.72 0.01 0.8 4794
4826 4826 23S 33 687 775   v4 C:G No BP       Weak B 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.93 0.0 0.86 282
4833 4833 23S 33 688 774   v4 U:G No BP       Significant B 0 4 0 0.0 0.0 0.0 0.0 0.89 0.98 2.0 1.41 0.0 0.86 282
4931 4931 23S 34 703 729   v4 U:G No BP       Weak B 1 0 0 0.0 0.0 0.0 0.0 0.02 1.0 1.87 2.0 0.0 0.86 282
2131 2131 16S 30 944 1237   v4 G:C No BP       No Support B 2 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.99 0.0 0.71 4162
2215 2215 16S 31 960 975   v4 U:A No BP       Weak B 1 10 0 0.0 0.0 0.0 0.0 0.92 1.0 1.97 1.59 0.0 0.74 4347
2222 2222 16S 31 961 974   v4 U:A No BP       Weak B 1 28 0 0.0 0.01 0.0 0.01 0.87 0.87 1.95 1.32 0.0 0.74 4330
2460 2460 16S 34 1053 1205   v4 G:U No BP       Weak B 2 12 0 0.0 0.01 0.0 0.01 0.04 1.0 1.95 1.75 0.0 0.75 4383
2523 2523 16S 34 1064 1192   v4 G:C No BP       Strong B 2 24 1 0.08 0.0 0.0 0.0 0.97 0.99 1.99 1.78 0.0 0.75 4404
2733 2733 16S 40 1158 1178   v4 C:G No BP       Weak B 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.79 4605
2740 2740 16S 40 1159 1177   v4 U:G No BP       Weak B 43 2 1 0.04 0.0 0.0 0.0 0.06 0.99 1.63 1.97 0.0 0.78 4600
6436 6436 23S 55 1420 1578   v4 A:U No BP       Strong B 13 7 0 0.0 0.09 0.0 0.09 0.13 0.14 0.55 1.05 0.03 0.72 264
3279 3279 16S 45 1506 1529   v4 U:G No BP       Weak B 3 5 0 0.0 0.08 0.0 0.08 0.0 0.98 1.92 1.86 0.0 0.12 718
6744 6744 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong B 9 3 1 0.17 0.51 0.85 1.36 0.26 0.29 0.36 0.4 0.0 0.73 264
7227 7227 23S 66 1799 1820   v4 G:U No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.8 262
7500 7500 23S 69 1911 1919   v4 U:A No BP       Weak B 2 0 0 0.0 0.0 0.0 0.0 0.98 0.98 1.83 1.95 0.0 0.74 244
7514 7514 23S 71 1935 1962   v4 G:C No BP       Strong B 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.96 1.91 0.0 0.74 240
7759 7759 23S 74 2075 2434   v4 U:A No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
7969 7969 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong B 2 2 2 1.0 1.0 1.0 2.0 0.0 0.0 1.07 1.07 0.0 0.74 241
7976 7976 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong B 7 5 5 0.83 0.91 0.96 1.87 0.96 0.96 0.86 1.02 0.0 0.74 241
7983 7983 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
8193 8193 23S 80 2249 2255   v4 U:G No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.95 0.0 0.73 238
8312 8312 23S 84 2296 2322   v4 U:A No BP       Strong B 0 3 0 0.0 0.0 0.0 0.0 0.97 0.97 1.95 1.76 0.0 0.74 241
8683 8683 23S 90 2511 2577   v4 U:A No BP       No Support B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
8928 8928 23S 94 2637 2781   v4 U:A No BP       Strong B 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.96 0.0 0.65 213
9243 9243 23S 98 2796 2800   v4 U:A No BP       Strong B 5 5 1 0.2 0.39 0.8 1.19 0.8 0.82 -0.52 -0.47 0.01 0.12 218
9250 9250 23S 99 2808 2891   v4 G:U No BP   3°: base pair   ??? B 10 3 0 0.0 0.56 0.84 1.41 0.75 0.99 0.66 0.74 0.0 0.61 203
9397 9397 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong B 12 11 7 0.61 0.85 0.93 1.77 0.0 0.05 0.9 0.89 0.0 0.63 205

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");