Base-pair collective (covariation) scores

31 rows where conformation = "No BP" and group_code = 3 sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

strength 5

molecule 2

group_code 1

conformation 1

  • No BP · 31 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
30 30 16S 1 13 21   v4 U:G No BP       Weak 3 4 7 1 0.18 0.05 0.0 0.05 0.0 1.0 1.93 1.91 0.0 0.43 3097
912 912 16S 15 375 388   v4 U:G No BP       Weak 3 3 21 1 0.08 0.01 0.0 0.01 0.0 0.99 1.96 1.88 0.0 0.81 5867
1297 1297 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong 3 56 55 17 0.31 0.29 0.7 0.99 0.11 0.69 1.2 0.89 0.0 0.83 5946
1444 1444 16S 21 606 632   v4 G:U No BP       Weak 3 67 128 12 0.12 0.1 0.0 0.1 0.07 0.78 0.34 0.02 0.01 0.69 6068
4825 4825 23S 33 687 775   v4 C:G No BP       Weak 3 2 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.83 524
4832 4832 23S 33 688 774   v4 U:G No BP       Significant 3 0 7 0 0.0 0.0 0.0 0.0 0.9 0.95 2.0 1.4 0.0 0.83 524
4930 4930 23S 34 703 729   v4 U:G No BP       Weak 3 20 0 0 0.0 0.01 0.0 0.01 0.23 1.0 1.23 1.98 0.0 0.83 524
2130 2130 16S 30 944 1237   v4 G:C No BP       No Support 3 2 1 0 0.0 0.11 0.0 0.11 1.0 1.0 1.96 1.99 0.0 0.74 5326
2214 2214 16S 31 960 975   v4 U:A No BP       Weak 3 1 14 0 0.0 0.0 0.0 0.0 0.72 1.0 1.97 1.14 0.0 0.77 5561
2221 2221 16S 31 961 974   v4 U:A No BP       Weak 3 4 37 0 0.0 0.01 0.0 0.01 0.69 0.89 1.94 0.72 0.0 0.77 5546
2459 2459 16S 34 1053 1205   v4 G:U No BP       Weak 3 2 13 0 0.0 0.01 0.0 0.01 0.03 1.0 1.95 1.77 0.0 0.78 5581
2522 2522 16S 34 1064 1192   v4 G:C No BP       Strong 3 9 32 6 0.29 0.82 0.96 1.78 0.8 0.82 1.23 1.21 0.0 0.78 5606
2732 2732 16S 40 1158 1178   v4 C:G No BP       Weak 3 7 9 1 0.12 0.06 0.0 0.06 0.97 0.97 1.91 1.77 0.0 0.81 5825
2739 2739 16S 40 1159 1177   v4 U:G No BP       Weak 3 65 16 5 0.12 0.14 0.0 0.14 0.07 0.94 1.29 1.71 0.0 0.81 5822
6435 6435 23S 55 1420 1578   v4 A:U No BP       Strong 3 26 22 11 0.46 0.53 0.74 1.27 0.52 0.53 -0.18 -0.05 0.02 0.69 484
3278 3278 16S 45 1506 1529   v4 U:G No BP       Weak 3 6 8 0 0.0 0.03 0.0 0.03 0.01 0.99 1.88 1.8 0.0 0.2 1484
6743 6743 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong 3 15 10 6 0.48 0.59 0.75 1.34 0.45 0.6 0.12 -0.1 0.0 0.69 485
7226 7226 23S 66 1799 1820   v4 G:U No BP       Weak 3 0 4 0 0.0 0.01 0.0 0.01 0.41 1.0 1.83 0.9 0.0 0.72 458
7499 7499 23S 69 1911 1919   v4 U:A No BP       Weak 3 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.9 1.98 0.0 0.7 440
7513 7513 23S 71 1935 1962   v4 G:C No BP       Strong 3 4 3 2 0.57 0.93 0.97 1.89 0.97 1.0 0.97 0.88 0.0 0.69 436
7758 7758 23S 74 2075 2434   v4 U:A No BP       Weak 3 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.69 437
7968 7968 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong 3 8 8 7 0.88 0.86 0.97 1.83 0.02 0.03 1.24 1.07 0.0 0.69 437
7975 7975 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong 3 11 10 7 0.67 0.83 0.94 1.77 0.94 0.95 0.98 1.11 0.0 0.69 437
7982 7982 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong 3 5 4 2 0.44 0.86 0.98 1.84 0.98 0.98 1.44 1.45 0.0 0.69 437
8192 8192 23S 80 2249 2255   v4 U:G No BP       Weak 3 1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.94 1.97 0.0 0.69 434
8311 8311 23S 84 2296 2322   v4 U:A No BP       Strong 3 1 5 0 0.0 0.03 0.0 0.03 0.93 0.93 1.88 1.64 0.0 0.69 437
8682 8682 23S 90 2511 2577   v4 U:A No BP       No Support 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.66 417
8927 8927 23S 94 2637 2781   v4 U:A No BP       Strong 3 10 15 7 0.56 0.76 0.93 1.7 0.93 0.94 1.02 0.92 0.0 0.6 379
9242 9242 23S 98 2796 2800   v4 U:A No BP       Strong 3 7 7 3 0.43 0.67 0.82 1.49 0.82 0.88 -0.56 -0.55 0.0 0.09 384
9249 9249 23S 99 2808 2891   v4 G:U No BP   3°: base pair   ??? 3 17 9 2 0.15 0.39 0.7 1.1 0.65 0.88 -0.42 0.05 0.08 0.4 325
9396 9396 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong 3 16 12 7 0.5 0.82 0.93 1.75 0.0 0.05 0.82 0.7 0.02 0.54 352

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");