RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

150 rows where domain_label = "Mitochondria" and rna_group = "16S" sorted by organism

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rna_group 1

  • 16S · 150 ✖

domain_label 1

  • Mitochondria · 150 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.16.m.A.americana 16S d 16 m Mitochondria   A.americana 16S/m/A.americana no https://staging.crw2.org/data/16S/m/A.americana/d.16.m.A.americana.pdf https://staging.crw2.org/data/16S/m/A.americana/d.16.m.A.americana.bpseq.txt https://staging.crw2.org/data/16S/m/A.americana/d.16.m.A.americana.ss.txt
b.16.m.A.caerulea 16S b 16 m Mitochondria   A.caerulea 16S/m/A.caerulea no https://staging.crw2.org/data/16S/m/A.caerulea/b.16.m.A.caerulea.pdf https://staging.crw2.org/data/16S/m/A.caerulea/b.16.m.A.caerulea.bpseq.txt https://staging.crw2.org/data/16S/m/A.caerulea/b.16.m.A.caerulea.ss.txt
d.16.m.A.cahirinus 16S d 16 m Mitochondria   A.cahirinus 16S/m/A.cahirinus no https://staging.crw2.org/data/16S/m/A.cahirinus/d.16.m.A.cahirinus.pdf https://staging.crw2.org/data/16S/m/A.cahirinus/d.16.m.A.cahirinus.bpseq.txt https://staging.crw2.org/data/16S/m/A.cahirinus/d.16.m.A.cahirinus.ss.txt
b.16.m.A.castellanii 16S b 16 m Mitochondria   A.castellanii 16S/m/A.castellanii no https://staging.crw2.org/data/16S/m/A.castellanii/b.16.m.A.castellanii.pdf https://staging.crw2.org/data/16S/m/A.castellanii/b.16.m.A.castellanii.bpseq.txt https://staging.crw2.org/data/16S/m/A.castellanii/b.16.m.A.castellanii.ss.txt
b.16.m.A.fornasini 16S b 16 m Mitochondria   A.fornasini 16S/m/A.fornasini no https://staging.crw2.org/data/16S/m/A.fornasini/b.16.m.A.fornasini.pdf https://staging.crw2.org/data/16S/m/A.fornasini/b.16.m.A.fornasini.bpseq.txt https://staging.crw2.org/data/16S/m/A.fornasini/b.16.m.A.fornasini.ss.txt
b.16.m.A.franciscana 16S b 16 m Mitochondria   A.franciscana 16S/m/A.franciscana no https://staging.crw2.org/data/16S/m/A.franciscana/b.16.m.A.franciscana.pdf https://staging.crw2.org/data/16S/m/A.franciscana/b.16.m.A.franciscana.bpseq.txt https://staging.crw2.org/data/16S/m/A.franciscana/b.16.m.A.franciscana.ss.txt
d.16.m.A.fulgens 16S d 16 m Mitochondria   A.fulgens 16S/m/A.fulgens no https://staging.crw2.org/data/16S/m/A.fulgens/d.16.m.A.fulgens.pdf https://staging.crw2.org/data/16S/m/A.fulgens/d.16.m.A.fulgens.bpseq.txt https://staging.crw2.org/data/16S/m/A.fulgens/d.16.m.A.fulgens.ss.txt
b.16.m.A.gambiae 16S b 16 m Mitochondria   A.gambiae 16S/m/A.gambiae no https://staging.crw2.org/data/16S/m/A.gambiae/b.16.m.A.gambiae.pdf https://staging.crw2.org/data/16S/m/A.gambiae/b.16.m.A.gambiae.bpseq.txt https://staging.crw2.org/data/16S/m/A.gambiae/b.16.m.A.gambiae.ss.txt
b.16.m.A.hottentotus 16S b 16 m Mitochondria   A.hottentotus 16S/m/A.hottentotus no https://staging.crw2.org/data/16S/m/A.hottentotus/b.16.m.A.hottentotus.pdf https://staging.crw2.org/data/16S/m/A.hottentotus/b.16.m.A.hottentotus.bpseq.txt https://staging.crw2.org/data/16S/m/A.hottentotus/b.16.m.A.hottentotus.ss.txt
b.16.m.A.mellifera 16S b 16 m Mitochondria   A.mellifera 16S/m/A.mellifera no https://staging.crw2.org/data/16S/m/A.mellifera/b.16.m.A.mellifera.pdf https://staging.crw2.org/data/16S/m/A.mellifera/b.16.m.A.mellifera.bpseq.txt https://staging.crw2.org/data/16S/m/A.mellifera/b.16.m.A.mellifera.ss.txt
b.16.m.A.mississippiensis 16S b 16 m Mitochondria   A.mississippiensis 16S/m/A.mississippiensis no https://staging.crw2.org/data/16S/m/A.mississippiensis/b.16.m.A.mississippiensis.pdf https://staging.crw2.org/data/16S/m/A.mississippiensis/b.16.m.A.mississippiensis.bpseq.txt https://staging.crw2.org/data/16S/m/A.mississippiensis/b.16.m.A.mississippiensis.ss.txt
b.16.m.A.pectinifera 16S b 16 m Mitochondria   A.pectinifera 16S/m/A.pectinifera no https://staging.crw2.org/data/16S/m/A.pectinifera/b.16.m.A.pectinifera.pdf https://staging.crw2.org/data/16S/m/A.pectinifera/b.16.m.A.pectinifera.bpseq.txt https://staging.crw2.org/data/16S/m/A.pectinifera/b.16.m.A.pectinifera.ss.txt
b.16.m.A.platyrhynchos 16S b 16 m Mitochondria   A.platyrhynchos 16S/m/A.platyrhynchos no https://staging.crw2.org/data/16S/m/A.platyrhynchos/b.16.m.A.platyrhynchos.pdf https://staging.crw2.org/data/16S/m/A.platyrhynchos/b.16.m.A.platyrhynchos.bpseq.txt https://staging.crw2.org/data/16S/m/A.platyrhynchos/b.16.m.A.platyrhynchos.ss.txt
b.16.m.A.quadrimaculatus 16S b 16 m Mitochondria   A.quadrimaculatus 16S/m/A.quadrimaculatus no https://staging.crw2.org/data/16S/m/A.quadrimaculatus/b.16.m.A.quadrimaculatus.pdf https://staging.crw2.org/data/16S/m/A.quadrimaculatus/b.16.m.A.quadrimaculatus.bpseq.txt https://staging.crw2.org/data/16S/m/A.quadrimaculatus/b.16.m.A.quadrimaculatus.ss.txt
b.16.m.A.suum 16S b 16 m Mitochondria   A.suum 16S/m/A.suum no https://staging.crw2.org/data/16S/m/A.suum/b.16.m.A.suum.pdf https://staging.crw2.org/data/16S/m/A.suum/b.16.m.A.suum.bpseq.txt https://staging.crw2.org/data/16S/m/A.suum/b.16.m.A.suum.ss.txt
d.16.m.Ateles.sp 16S d 16 m Mitochondria   Ateles.sp 16S/m/Ateles.sp no https://staging.crw2.org/data/16S/m/Ateles.sp/d.16.m.Ateles.sp.pdf https://staging.crw2.org/data/16S/m/Ateles.sp/d.16.m.Ateles.sp.bpseq.txt https://staging.crw2.org/data/16S/m/Ateles.sp/d.16.m.Ateles.sp.ss.txt
a.16.m.B.boreas.LLAD 16S a 16 m Mitochondria   B.boreas.LLAD 16S/m/B.boreas.LLAD no https://staging.crw2.org/data/16S/m/B.boreas.LLAD/a.16.m.B.boreas.LLAD.pdf https://staging.crw2.org/data/16S/m/B.boreas.LLAD/a.16.m.B.boreas.LLAD.bpseq.txt https://staging.crw2.org/data/16S/m/B.boreas.LLAD/a.16.m.B.boreas.LLAD.ss.txt
d.16.m.B.brevicauda 16S d 16 m Mitochondria   B.brevicauda 16S/m/B.brevicauda no https://staging.crw2.org/data/16S/m/B.brevicauda/d.16.m.B.brevicauda.pdf https://staging.crw2.org/data/16S/m/B.brevicauda/d.16.m.B.brevicauda.bpseq.txt https://staging.crw2.org/data/16S/m/B.brevicauda/d.16.m.B.brevicauda.ss.txt
b.16.m.B.musculus 16S b 16 m Mitochondria   B.musculus 16S/m/B.musculus no https://staging.crw2.org/data/16S/m/B.musculus/b.16.m.B.musculus.pdf https://staging.crw2.org/data/16S/m/B.musculus/b.16.m.B.musculus.bpseq.txt https://staging.crw2.org/data/16S/m/B.musculus/b.16.m.B.musculus.ss.txt
d.16.m.B.taurus 16S d 16 m Mitochondria   B.taurus 16S/m/B.taurus no https://staging.crw2.org/data/16S/m/B.taurus/d.16.m.B.taurus.pdf https://staging.crw2.org/data/16S/m/B.taurus/d.16.m.B.taurus.bpseq.txt https://staging.crw2.org/data/16S/m/B.taurus/d.16.m.B.taurus.ss.txt
b.16.m.C.carpio 16S b 16 m Mitochondria   C.carpio 16S/m/C.carpio no https://staging.crw2.org/data/16S/m/C.carpio/b.16.m.C.carpio.pdf https://staging.crw2.org/data/16S/m/C.carpio/b.16.m.C.carpio.bpseq.txt https://staging.crw2.org/data/16S/m/C.carpio/b.16.m.C.carpio.ss.txt
b.16.m.C.coscoroba 16S b 16 m Mitochondria   C.coscoroba 16S/m/C.coscoroba no https://staging.crw2.org/data/16S/m/C.coscoroba/b.16.m.C.coscoroba.pdf https://staging.crw2.org/data/16S/m/C.coscoroba/b.16.m.C.coscoroba.bpseq.txt https://staging.crw2.org/data/16S/m/C.coscoroba/b.16.m.C.coscoroba.ss.txt
b.16.m.C.coturnix 16S b 16 m Mitochondria   C.coturnix 16S/m/C.coturnix no https://staging.crw2.org/data/16S/m/C.coturnix/b.16.m.C.coturnix.pdf https://staging.crw2.org/data/16S/m/C.coturnix/b.16.m.C.coturnix.bpseq.txt https://staging.crw2.org/data/16S/m/C.coturnix/b.16.m.C.coturnix.ss.txt
b.16.m.C.crispus 16S b 16 m Mitochondria   C.crispus 16S/m/C.crispus no https://staging.crw2.org/data/16S/m/C.crispus/b.16.m.C.crispus.pdf https://staging.crw2.org/data/16S/m/C.crispus/b.16.m.C.crispus.bpseq.txt https://staging.crw2.org/data/16S/m/C.crispus/b.16.m.C.crispus.ss.txt
d.16.m.C.elegans 16S d 16 m Mitochondria   C.elegans 16S/m/C.elegans no https://staging.crw2.org/data/16S/m/C.elegans/d.16.m.C.elegans.pdf https://staging.crw2.org/data/16S/m/C.elegans/d.16.m.C.elegans.bpseq.txt https://staging.crw2.org/data/16S/m/C.elegans/d.16.m.C.elegans.ss.txt
d.16.m.C.eugametos 16S d 16 m Mitochondria   C.eugametos 16S/m/C.eugametos no https://staging.crw2.org/data/16S/m/C.eugametos/d.16.m.C.eugametos.pdf https://staging.crw2.org/data/16S/m/C.eugametos/d.16.m.C.eugametos.bpseq.txt https://staging.crw2.org/data/16S/m/C.eugametos/d.16.m.C.eugametos.ss.txt
a.16.m.C.fasciculata 16S a 16 m Mitochondria   C.fasciculata 16S/m/C.fasciculata no https://staging.crw2.org/data/16S/m/C.fasciculata/a.16.m.C.fasciculata.pdf https://staging.crw2.org/data/16S/m/C.fasciculata/a.16.m.C.fasciculata.bpseq.txt https://staging.crw2.org/data/16S/m/C.fasciculata/a.16.m.C.fasciculata.ss.txt
d.16.m.C.gigas 16S d 16 m Mitochondria   C.gigas 16S/m/C.gigas no https://staging.crw2.org/data/16S/m/C.gigas/d.16.m.C.gigas.pdf https://staging.crw2.org/data/16S/m/C.gigas/d.16.m.C.gigas.bpseq.txt https://staging.crw2.org/data/16S/m/C.gigas/d.16.m.C.gigas.ss.txt
d.16.m.C.glareolus 16S d 16 m Mitochondria   C.glareolus 16S/m/C.glareolus no https://staging.crw2.org/data/16S/m/C.glareolus/d.16.m.C.glareolus.pdf https://staging.crw2.org/data/16S/m/C.glareolus/d.16.m.C.glareolus.bpseq.txt https://staging.crw2.org/data/16S/m/C.glareolus/d.16.m.C.glareolus.ss.txt
d.16.m.C.hongkongensis 16S d 16 m Mitochondria   C.hongkongensis 16S/m/C.hongkongensis no https://staging.crw2.org/data/16S/m/C.hongkongensis/d.16.m.C.hongkongensis.pdf https://staging.crw2.org/data/16S/m/C.hongkongensis/d.16.m.C.hongkongensis.bpseq.txt https://staging.crw2.org/data/16S/m/C.hongkongensis/d.16.m.C.hongkongensis.ss.txt
b.16.m.C.lacustre 16S b 16 m Mitochondria   C.lacustre 16S/m/C.lacustre no https://staging.crw2.org/data/16S/m/C.lacustre/b.16.m.C.lacustre.pdf https://staging.crw2.org/data/16S/m/C.lacustre/b.16.m.C.lacustre.bpseq.txt https://staging.crw2.org/data/16S/m/C.lacustre/b.16.m.C.lacustre.ss.txt
b.16.m.C.melancoryphus 16S b 16 m Mitochondria   C.melancoryphus 16S/m/C.melancoryphus no https://staging.crw2.org/data/16S/m/C.melancoryphus/b.16.m.C.melancoryphus.pdf https://staging.crw2.org/data/16S/m/C.melancoryphus/b.16.m.C.melancoryphus.bpseq.txt https://staging.crw2.org/data/16S/m/C.melancoryphus/b.16.m.C.melancoryphus.ss.txt
b.16.m.C.parallelus.ESC 16S b 16 m Mitochondria   C.parallelus.ESC 16S/m/C.parallelus.ESC no https://staging.crw2.org/data/16S/m/C.parallelus.ESC/b.16.m.C.parallelus.ESC.pdf https://staging.crw2.org/data/16S/m/C.parallelus.ESC/b.16.m.C.parallelus.ESC.bpseq.txt https://staging.crw2.org/data/16S/m/C.parallelus.ESC/b.16.m.C.parallelus.ESC.ss.txt
b.16.m.C.parallelus.NOR 16S b 16 m Mitochondria   C.parallelus.NOR 16S/m/C.parallelus.NOR no https://staging.crw2.org/data/16S/m/C.parallelus.NOR/b.16.m.C.parallelus.NOR.pdf https://staging.crw2.org/data/16S/m/C.parallelus.NOR/b.16.m.C.parallelus.NOR.bpseq.txt https://staging.crw2.org/data/16S/m/C.parallelus.NOR/b.16.m.C.parallelus.NOR.ss.txt
b.16.m.C.reinhardtii 16S b 16 m Mitochondria   C.reinhardtii 16S/m/C.reinhardtii no https://staging.crw2.org/data/16S/m/C.reinhardtii/b.16.m.C.reinhardtii.pdf https://staging.crw2.org/data/16S/m/C.reinhardtii/b.16.m.C.reinhardtii.bpseq.txt https://staging.crw2.org/data/16S/m/C.reinhardtii/b.16.m.C.reinhardtii.ss.txt
b.16.m.C.roenbergensis 16S b 16 m Mitochondria   C.roenbergensis 16S/m/C.roenbergensis no   https://staging.crw2.org/data/16S/m/C.roenbergensis/b.16.m.C.roenbergensis.bpseq.txt https://staging.crw2.org/data/16S/m/C.roenbergensis/b.16.m.C.roenbergensis.ss.txt
b.16.m.C.synuroideus 16S b 16 m Mitochondria   C.synuroideus 16S/m/C.synuroideus no https://staging.crw2.org/data/16S/m/C.synuroideus/b.16.m.C.synuroideus.pdf https://staging.crw2.org/data/16S/m/C.synuroideus/b.16.m.C.synuroideus.bpseq.txt https://staging.crw2.org/data/16S/m/C.synuroideus/b.16.m.C.synuroideus.ss.txt
b.16.m.C.synuroideus.mg 16S b 16 m Mitochondria   C.synuroideus.mg 16S/m/C.synuroideus.mg no https://staging.crw2.org/data/16S/m/C.synuroideus.mg/b.16.m.C.synuroideus.mg.pdf https://staging.crw2.org/data/16S/m/C.synuroideus.mg/b.16.m.C.synuroideus.mg.bpseq.txt https://staging.crw2.org/data/16S/m/C.synuroideus.mg/b.16.m.C.synuroideus.mg.ss.txt
d.16.m.C.variegatus 16S d 16 m Mitochondria   C.variegatus 16S/m/C.variegatus no https://staging.crw2.org/data/16S/m/C.variegatus/d.16.m.C.variegatus.pdf https://staging.crw2.org/data/16S/m/C.variegatus/d.16.m.C.variegatus.bpseq.txt https://staging.crw2.org/data/16S/m/C.variegatus/d.16.m.C.variegatus.ss.txt
d.16.m.C.virginica 16S d 16 m Mitochondria   C.virginica 16S/m/C.virginica no https://staging.crw2.org/data/16S/m/C.virginica/d.16.m.C.virginica.pdf https://staging.crw2.org/data/16S/m/C.virginica/d.16.m.C.virginica.bpseq.txt https://staging.crw2.org/data/16S/m/C.virginica/d.16.m.C.virginica.ss.txt
b.16.m.Ceratophrys.sp 16S b 16 m Mitochondria   Ceratophrys.sp 16S/m/Ceratophrys.sp no   https://staging.crw2.org/data/16S/m/Ceratophrys.sp/b.16.m.Ceratophrys.sp.bpseq.txt https://staging.crw2.org/data/16S/m/Ceratophrys.sp/b.16.m.Ceratophrys.sp.ss.txt
b.16.m.D.discoideum 16S b 16 m Mitochondria   D.discoideum 16S/m/D.discoideum no https://staging.crw2.org/data/16S/m/D.discoideum/b.16.m.D.discoideum.pdf https://staging.crw2.org/data/16S/m/D.discoideum/b.16.m.D.discoideum.bpseq.txt https://staging.crw2.org/data/16S/m/D.discoideum/b.16.m.D.discoideum.ss.txt
d.16.m.D.dugon 16S d 16 m Mitochondria   D.dugon 16S/m/D.dugon no https://staging.crw2.org/data/16S/m/D.dugon/d.16.m.D.dugon.pdf https://staging.crw2.org/data/16S/m/D.dugon/d.16.m.D.dugon.bpseq.txt https://staging.crw2.org/data/16S/m/D.dugon/d.16.m.D.dugon.ss.txt
d.16.m.D.geoffroii 16S d 16 m Mitochondria   D.geoffroii 16S/m/D.geoffroii no https://staging.crw2.org/data/16S/m/D.geoffroii/d.16.m.D.geoffroii.pdf https://staging.crw2.org/data/16S/m/D.geoffroii/d.16.m.D.geoffroii.bpseq.txt https://staging.crw2.org/data/16S/m/D.geoffroii/d.16.m.D.geoffroii.ss.txt
d.16.m.D.novemcinctus 16S d 16 m Mitochondria   D.novemcinctus 16S/m/D.novemcinctus no https://staging.crw2.org/data/16S/m/D.novemcinctus/d.16.m.D.novemcinctus.pdf https://staging.crw2.org/data/16S/m/D.novemcinctus/d.16.m.D.novemcinctus.bpseq.txt https://staging.crw2.org/data/16S/m/D.novemcinctus/d.16.m.D.novemcinctus.ss.txt
b.16.m.D.pulex 16S b 16 m Mitochondria   D.pulex 16S/m/D.pulex no https://staging.crw2.org/data/16S/m/D.pulex/b.16.m.D.pulex.pdf https://staging.crw2.org/data/16S/m/D.pulex/b.16.m.D.pulex.bpseq.txt https://staging.crw2.org/data/16S/m/D.pulex/b.16.m.D.pulex.ss.txt
b.16.m.D.pygargus 16S b 16 m Mitochondria   D.pygargus 16S/m/D.pygargus no https://staging.crw2.org/data/16S/m/D.pygargus/b.16.m.D.pygargus.pdf https://staging.crw2.org/data/16S/m/D.pygargus/b.16.m.D.pygargus.bpseq.txt https://staging.crw2.org/data/16S/m/D.pygargus/b.16.m.D.pygargus.ss.txt
b.16.m.D.teissieri 16S b 16 m Mitochondria   D.teissieri 16S/m/D.teissieri no https://staging.crw2.org/data/16S/m/D.teissieri/b.16.m.D.teissieri.pdf https://staging.crw2.org/data/16S/m/D.teissieri/b.16.m.D.teissieri.bpseq.txt https://staging.crw2.org/data/16S/m/D.teissieri/b.16.m.D.teissieri.ss.txt
b.16.m.D.virginiana 16S b 16 m Mitochondria   D.virginiana 16S/m/D.virginiana no https://staging.crw2.org/data/16S/m/D.virginiana/b.16.m.D.virginiana.pdf https://staging.crw2.org/data/16S/m/D.virginiana/b.16.m.D.virginiana.bpseq.txt https://staging.crw2.org/data/16S/m/D.virginiana/b.16.m.D.virginiana.ss.txt
d.16.m.D.virilis 16S d 16 m Mitochondria   D.virilis 16S/m/D.virilis no https://staging.crw2.org/data/16S/m/D.virilis/d.16.m.D.virilis.pdf https://staging.crw2.org/data/16S/m/D.virilis/d.16.m.D.virilis.bpseq.txt https://staging.crw2.org/data/16S/m/D.virilis/d.16.m.D.virilis.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);