RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

289 rows where domain_label = "Eukarya" and rna_group = "16S" sorted by organism

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Suggested facets: diagram_code, folder_mismatch

rna_group 1

  • 16S · 289 ✖

domain_label 1

  • Eukarya · 289 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.16.e.A.ambigua 16S d 16 e Eukarya   A.ambigua 16S/e/A.ambigua no https://staging.crw2.org/data/16S/e/A.ambigua/d.16.e.A.ambigua.pdf https://staging.crw2.org/data/16S/e/A.ambigua/d.16.e.A.ambigua.bpseq.txt https://staging.crw2.org/data/16S/e/A.ambigua/d.16.e.A.ambigua.ss.txt
b.16.e.A.australis 16S b 16 e Eukarya   A.australis 16S/e/A.australis no https://staging.crw2.org/data/16S/e/A.australis/b.16.e.A.australis.pdf https://staging.crw2.org/data/16S/e/A.australis/b.16.e.A.australis.bpseq.txt https://staging.crw2.org/data/16S/e/A.australis/b.16.e.A.australis.ss.txt
d.16.e.A.baicalensis 16S d 16 e Eukarya   A.baicalensis 16S/e/A.baicalensis no https://staging.crw2.org/data/16S/e/A.baicalensis/d.16.e.A.baicalensis.pdf https://staging.crw2.org/data/16S/e/A.baicalensis/d.16.e.A.baicalensis.bpseq.txt https://staging.crw2.org/data/16S/e/A.baicalensis/d.16.e.A.baicalensis.ss.txt
d.16.e.A.bongranii 16S d 16 e Eukarya   A.bongranii 16S/e/A.bongranii no https://staging.crw2.org/data/16S/e/A.bongranii/d.16.e.A.bongranii.pdf https://staging.crw2.org/data/16S/e/A.bongranii/d.16.e.A.bongranii.bpseq.txt https://staging.crw2.org/data/16S/e/A.bongranii/d.16.e.A.bongranii.ss.txt
d.16.e.A.bracteata 16S d 16 e Eukarya   A.bracteata 16S/e/A.bracteata no https://staging.crw2.org/data/16S/e/A.bracteata/d.16.e.A.bracteata.pdf https://staging.crw2.org/data/16S/e/A.bracteata/d.16.e.A.bracteata.bpseq.txt https://staging.crw2.org/data/16S/e/A.bracteata/d.16.e.A.bracteata.ss.txt
d.16.e.A.capitellata 16S d 16 e Eukarya   A.capitellata 16S/e/A.capitellata no https://staging.crw2.org/data/16S/e/A.capitellata/d.16.e.A.capitellata.pdf https://staging.crw2.org/data/16S/e/A.capitellata/d.16.e.A.capitellata.bpseq.txt https://staging.crw2.org/data/16S/e/A.capitellata/d.16.e.A.capitellata.ss.txt
d.16.e.A.castellanii 16S d 16 e Eukarya   A.castellanii 16S/e/A.castellanii no https://staging.crw2.org/data/16S/e/A.castellanii/d.16.e.A.castellanii.pdf https://staging.crw2.org/data/16S/e/A.castellanii/d.16.e.A.castellanii.bpseq.txt https://staging.crw2.org/data/16S/e/A.castellanii/d.16.e.A.castellanii.ss.txt
d.16.e.A.connecticus 16S d 16 e Eukarya   A.connecticus 16S/e/A.connecticus no https://staging.crw2.org/data/16S/e/A.connecticus/d.16.e.A.connecticus.pdf https://staging.crw2.org/data/16S/e/A.connecticus/d.16.e.A.connecticus.bpseq.txt https://staging.crw2.org/data/16S/e/A.connecticus/d.16.e.A.connecticus.ss.txt
d.16.e.A.corymbifera.1 16S d 16 e Eukarya   A.corymbifera.1 16S/e/A.corymbifera.1 no https://staging.crw2.org/data/16S/e/A.corymbifera.1/d.16.e.A.corymbifera.1.pdf https://staging.crw2.org/data/16S/e/A.corymbifera.1/d.16.e.A.corymbifera.1.bpseq.txt https://staging.crw2.org/data/16S/e/A.corymbifera.1/d.16.e.A.corymbifera.1.ss.txt
d.16.e.A.corymbifera.2 16S d 16 e Eukarya   A.corymbifera.2 16S/e/A.corymbifera.2 no https://staging.crw2.org/data/16S/e/A.corymbifera.2/d.16.e.A.corymbifera.2.pdf https://staging.crw2.org/data/16S/e/A.corymbifera.2/d.16.e.A.corymbifera.2.bpseq.txt https://staging.crw2.org/data/16S/e/A.corymbifera.2/d.16.e.A.corymbifera.2.ss.txt
d.16.e.A.dasyae 16S d 16 e Eukarya   A.dasyae 16S/e/A.dasyae no https://staging.crw2.org/data/16S/e/A.dasyae/d.16.e.A.dasyae.pdf https://staging.crw2.org/data/16S/e/A.dasyae/d.16.e.A.dasyae.bpseq.txt https://staging.crw2.org/data/16S/e/A.dasyae/d.16.e.A.dasyae.ss.txt
d.16.e.A.ferocious 16S d 16 e Eukarya   A.ferocious 16S/e/A.ferocious no https://staging.crw2.org/data/16S/e/A.ferocious/d.16.e.A.ferocious.pdf https://staging.crw2.org/data/16S/e/A.ferocious/d.16.e.A.ferocious.bpseq.txt https://staging.crw2.org/data/16S/e/A.ferocious/d.16.e.A.ferocious.ss.txt
d.16.e.A.flavus 16S d 16 e Eukarya   A.flavus 16S/e/A.flavus no https://staging.crw2.org/data/16S/e/A.flavus/d.16.e.A.flavus.pdf https://staging.crw2.org/data/16S/e/A.flavus/d.16.e.A.flavus.bpseq.txt https://staging.crw2.org/data/16S/e/A.flavus/d.16.e.A.flavus.ss.txt
d.16.e.A.fundyense 16S d 16 e Eukarya   A.fundyense 16S/e/A.fundyense no https://staging.crw2.org/data/16S/e/A.fundyense/d.16.e.A.fundyense.pdf https://staging.crw2.org/data/16S/e/A.fundyense/d.16.e.A.fundyense.bpseq.txt https://staging.crw2.org/data/16S/e/A.fundyense/d.16.e.A.fundyense.ss.txt
d.16.e.A.hermannii 16S d 16 e Eukarya   A.hermannii 16S/e/A.hermannii no https://staging.crw2.org/data/16S/e/A.hermannii/d.16.e.A.hermannii.pdf https://staging.crw2.org/data/16S/e/A.hermannii/d.16.e.A.hermannii.bpseq.txt https://staging.crw2.org/data/16S/e/A.hermannii/d.16.e.A.hermannii.ss.txt
d.16.e.A.invadans 16S d 16 e Eukarya   A.invadans 16S/e/A.invadans no https://staging.crw2.org/data/16S/e/A.invadans/d.16.e.A.invadans.pdf https://staging.crw2.org/data/16S/e/A.invadans/d.16.e.A.invadans.bpseq.txt https://staging.crw2.org/data/16S/e/A.invadans/d.16.e.A.invadans.ss.txt
d.16.e.A.kariana 16S d 16 e Eukarya   A.kariana 16S/e/A.kariana no https://staging.crw2.org/data/16S/e/A.kariana/d.16.e.A.kariana.pdf https://staging.crw2.org/data/16S/e/A.kariana/d.16.e.A.kariana.bpseq.txt https://staging.crw2.org/data/16S/e/A.kariana/d.16.e.A.kariana.ss.txt
d.16.e.A.khaliulini 16S d 16 e Eukarya   A.khaliulini 16S/e/A.khaliulini no https://staging.crw2.org/data/16S/e/A.khaliulini/d.16.e.A.khaliulini.pdf https://staging.crw2.org/data/16S/e/A.khaliulini/d.16.e.A.khaliulini.bpseq.txt https://staging.crw2.org/data/16S/e/A.khaliulini/d.16.e.A.khaliulini.ss.txt
d.16.e.A.leptoticha 16S d 16 e Eukarya   A.leptoticha 16S/e/A.leptoticha no https://staging.crw2.org/data/16S/e/A.leptoticha/d.16.e.A.leptoticha.pdf https://staging.crw2.org/data/16S/e/A.leptoticha/d.16.e.A.leptoticha.bpseq.txt https://staging.crw2.org/data/16S/e/A.leptoticha/d.16.e.A.leptoticha.ss.txt
d.16.e.A.macrogynus 16S d 16 e Eukarya   A.macrogynus 16S/e/A.macrogynus no https://staging.crw2.org/data/16S/e/A.macrogynus/d.16.e.A.macrogynus.pdf https://staging.crw2.org/data/16S/e/A.macrogynus/d.16.e.A.macrogynus.bpseq.txt https://staging.crw2.org/data/16S/e/A.macrogynus/d.16.e.A.macrogynus.ss.txt
d.16.e.A.majus 16S d 16 e Eukarya   A.majus 16S/e/A.majus no https://staging.crw2.org/data/16S/e/A.majus/d.16.e.A.majus.pdf https://staging.crw2.org/data/16S/e/A.majus/d.16.e.A.majus.bpseq.txt https://staging.crw2.org/data/16S/e/A.majus/d.16.e.A.majus.ss.txt
d.16.e.A.michaelis 16S d 16 e Eukarya   A.michaelis 16S/e/A.michaelis no https://staging.crw2.org/data/16S/e/A.michaelis/d.16.e.A.michaelis.pdf https://staging.crw2.org/data/16S/e/A.michaelis/d.16.e.A.michaelis.bpseq.txt https://staging.crw2.org/data/16S/e/A.michaelis/d.16.e.A.michaelis.ss.txt
d.16.e.A.penaei 16S d 16 e Eukarya   A.penaei 16S/e/A.penaei no https://staging.crw2.org/data/16S/e/A.penaei/d.16.e.A.penaei.pdf https://staging.crw2.org/data/16S/e/A.penaei/d.16.e.A.penaei.bpseq.txt https://staging.crw2.org/data/16S/e/A.penaei/d.16.e.A.penaei.ss.txt
d.16.e.A.plicata 16S d 16 e Eukarya   A.plicata 16S/e/A.plicata no https://staging.crw2.org/data/16S/e/A.plicata/d.16.e.A.plicata.pdf https://staging.crw2.org/data/16S/e/A.plicata/d.16.e.A.plicata.bpseq.txt https://staging.crw2.org/data/16S/e/A.plicata/d.16.e.A.plicata.ss.txt
b.16.e.A.salina 16S b 16 e Eukarya   A.salina 16S/e/A.salina no https://staging.crw2.org/data/16S/e/A.salina/b.16.e.A.salina.pdf https://staging.crw2.org/data/16S/e/A.salina/b.16.e.A.salina.bpseq.txt https://staging.crw2.org/data/16S/e/A.salina/b.16.e.A.salina.ss.txt
d.16.e.A.scoticae 16S d 16 e Eukarya   A.scoticae 16S/e/A.scoticae no https://staging.crw2.org/data/16S/e/A.scoticae/d.16.e.A.scoticae.pdf https://staging.crw2.org/data/16S/e/A.scoticae/d.16.e.A.scoticae.bpseq.txt https://staging.crw2.org/data/16S/e/A.scoticae/d.16.e.A.scoticae.ss.txt
d.16.e.A.thaliana 16S d 16 e Eukarya   A.thaliana 16S/e/A.thaliana no https://staging.crw2.org/data/16S/e/A.thaliana/d.16.e.A.thaliana.pdf https://staging.crw2.org/data/16S/e/A.thaliana/d.16.e.A.thaliana.bpseq.txt https://staging.crw2.org/data/16S/e/A.thaliana/d.16.e.A.thaliana.ss.txt
d.16.e.A.unguiculata 16S d 16 e Eukarya   A.unguiculata 16S/e/A.unguiculata no https://staging.crw2.org/data/16S/e/A.unguiculata/d.16.e.A.unguiculata.pdf https://staging.crw2.org/data/16S/e/A.unguiculata/d.16.e.A.unguiculata.bpseq.txt https://staging.crw2.org/data/16S/e/A.unguiculata/d.16.e.A.unguiculata.ss.txt
d.16.e.A.verticilliflorum 16S d 16 e Eukarya   A.verticilliflorum 16S/e/A.verticilliflorum no https://staging.crw2.org/data/16S/e/A.verticilliflorum/d.16.e.A.verticilliflorum.pdf https://staging.crw2.org/data/16S/e/A.verticilliflorum/d.16.e.A.verticilliflorum.bpseq.txt https://staging.crw2.org/data/16S/e/A.verticilliflorum/d.16.e.A.verticilliflorum.ss.txt
d.16.e.Amblyospora.sp 16S d 16 e Eukarya   Amblyospora.sp 16S/e/Amblyospora.sp no https://staging.crw2.org/data/16S/e/Amblyospora.sp/d.16.e.Amblyospora.sp.pdf https://staging.crw2.org/data/16S/e/Amblyospora.sp/d.16.e.Amblyospora.sp.bpseq.txt https://staging.crw2.org/data/16S/e/Amblyospora.sp/d.16.e.Amblyospora.sp.ss.txt
d.16.e.B.algerae 16S d 16 e Eukarya   B.algerae 16S/e/B.algerae no https://staging.crw2.org/data/16S/e/B.algerae/d.16.e.B.algerae.pdf https://staging.crw2.org/data/16S/e/B.algerae/d.16.e.B.algerae.bpseq.txt https://staging.crw2.org/data/16S/e/B.algerae/d.16.e.B.algerae.ss.txt
d.16.e.B.bigemina 16S d 16 e Eukarya   B.bigemina 16S/e/B.bigemina no https://staging.crw2.org/data/16S/e/B.bigemina/d.16.e.B.bigemina.pdf https://staging.crw2.org/data/16S/e/B.bigemina/d.16.e.B.bigemina.bpseq.txt https://staging.crw2.org/data/16S/e/B.bigemina/d.16.e.B.bigemina.ss.txt
d.16.e.B.bovis 16S d 16 e Eukarya   B.bovis 16S/e/B.bovis no https://staging.crw2.org/data/16S/e/B.bovis/d.16.e.B.bovis.pdf https://staging.crw2.org/data/16S/e/B.bovis/d.16.e.B.bovis.bpseq.txt https://staging.crw2.org/data/16S/e/B.bovis/d.16.e.B.bovis.ss.txt
d.16.e.B.canis 16S d 16 e Eukarya   B.canis 16S/e/B.canis no https://staging.crw2.org/data/16S/e/B.canis/d.16.e.B.canis.pdf https://staging.crw2.org/data/16S/e/B.canis/d.16.e.B.canis.bpseq.txt https://staging.crw2.org/data/16S/e/B.canis/d.16.e.B.canis.ss.txt
d.16.e.B.chalceum 16S d 16 e Eukarya   B.chalceum 16S/e/B.chalceum no https://staging.crw2.org/data/16S/e/B.chalceum/d.16.e.B.chalceum.pdf https://staging.crw2.org/data/16S/e/B.chalceum/d.16.e.B.chalceum.bpseq.txt https://staging.crw2.org/data/16S/e/B.chalceum/d.16.e.B.chalceum.ss.txt
d.16.e.B.coli 16S d 16 e Eukarya   B.coli 16S/e/B.coli no https://staging.crw2.org/data/16S/e/B.coli/d.16.e.B.coli.pdf https://staging.crw2.org/data/16S/e/B.coli/d.16.e.B.coli.bpseq.txt https://staging.crw2.org/data/16S/e/B.coli/d.16.e.B.coli.ss.txt
d.16.e.B.emersonii 16S d 16 e Eukarya   B.emersonii 16S/e/B.emersonii no https://staging.crw2.org/data/16S/e/B.emersonii/d.16.e.B.emersonii.pdf https://staging.crw2.org/data/16S/e/B.emersonii/d.16.e.B.emersonii.bpseq.txt https://staging.crw2.org/data/16S/e/B.emersonii/d.16.e.B.emersonii.ss.txt
d.16.e.B.gelatinosum 16S d 16 e Eukarya   B.gelatinosum 16S/e/B.gelatinosum no https://staging.crw2.org/data/16S/e/B.gelatinosum/d.16.e.B.gelatinosum.pdf https://staging.crw2.org/data/16S/e/B.gelatinosum/d.16.e.B.gelatinosum.bpseq.txt https://staging.crw2.org/data/16S/e/B.gelatinosum/d.16.e.B.gelatinosum.ss.txt
d.16.e.B.gibsoni 16S d 16 e Eukarya   B.gibsoni 16S/e/B.gibsoni no https://staging.crw2.org/data/16S/e/B.gibsoni/d.16.e.B.gibsoni.pdf https://staging.crw2.org/data/16S/e/B.gibsoni/d.16.e.B.gibsoni.bpseq.txt https://staging.crw2.org/data/16S/e/B.gibsoni/d.16.e.B.gibsoni.ss.txt
d.16.e.B.hamifera 16S d 16 e Eukarya   B.hamifera 16S/e/B.hamifera no https://staging.crw2.org/data/16S/e/B.hamifera/d.16.e.B.hamifera.pdf https://staging.crw2.org/data/16S/e/B.hamifera/d.16.e.B.hamifera.bpseq.txt https://staging.crw2.org/data/16S/e/B.hamifera/d.16.e.B.hamifera.ss.txt
d.16.e.B.hominis 16S d 16 e Eukarya   B.hominis 16S/e/B.hominis no https://staging.crw2.org/data/16S/e/B.hominis/d.16.e.B.hominis.pdf https://staging.crw2.org/data/16S/e/B.hominis/d.16.e.B.hominis.bpseq.txt https://staging.crw2.org/data/16S/e/B.hominis/d.16.e.B.hominis.ss.txt
d.16.e.B.investiens 16S d 16 e Eukarya   B.investiens 16S/e/B.investiens no https://staging.crw2.org/data/16S/e/B.investiens/d.16.e.B.investiens.pdf https://staging.crw2.org/data/16S/e/B.investiens/d.16.e.B.investiens.bpseq.txt https://staging.crw2.org/data/16S/e/B.investiens/d.16.e.B.investiens.ss.txt
d.16.e.B.macrosporum 16S d 16 e Eukarya   B.macrosporum 16S/e/B.macrosporum no https://staging.crw2.org/data/16S/e/B.macrosporum/d.16.e.B.macrosporum.pdf https://staging.crw2.org/data/16S/e/B.macrosporum/d.16.e.B.macrosporum.bpseq.txt https://staging.crw2.org/data/16S/e/B.macrosporum/d.16.e.B.macrosporum.ss.txt
d.16.e.B.mandrillaris 16S d 16 e Eukarya   B.mandrillaris 16S/e/B.mandrillaris no https://staging.crw2.org/data/16S/e/B.mandrillaris/d.16.e.B.mandrillaris.pdf https://staging.crw2.org/data/16S/e/B.mandrillaris/d.16.e.B.mandrillaris.bpseq.txt https://staging.crw2.org/data/16S/e/B.mandrillaris/d.16.e.B.mandrillaris.ss.txt
d.16.e.B.mediterranea 16S d 16 e Eukarya   B.mediterranea 16S/e/B.mediterranea no https://staging.crw2.org/data/16S/e/B.mediterranea/d.16.e.B.mediterranea.pdf https://staging.crw2.org/data/16S/e/B.mediterranea/d.16.e.B.mediterranea.bpseq.txt https://staging.crw2.org/data/16S/e/B.mediterranea/d.16.e.B.mediterranea.ss.txt
d.16.e.B.microti.1 16S d 16 e Eukarya   B.microti.1 16S/e/B.microti.1 no https://staging.crw2.org/data/16S/e/B.microti.1/d.16.e.B.microti.1.pdf https://staging.crw2.org/data/16S/e/B.microti.1/d.16.e.B.microti.1.bpseq.txt https://staging.crw2.org/data/16S/e/B.microti.1/d.16.e.B.microti.1.ss.txt
d.16.e.B.microti.2 16S d 16 e Eukarya   B.microti.2 16S/e/B.microti.2 no https://staging.crw2.org/data/16S/e/B.microti.2/d.16.e.B.microti.2.pdf https://staging.crw2.org/data/16S/e/B.microti.2/d.16.e.B.microti.2.bpseq.txt https://staging.crw2.org/data/16S/e/B.microti.2/d.16.e.B.microti.2.ss.txt
d.16.e.B.microti.3 16S d 16 e Eukarya   B.microti.3 16S/e/B.microti.3 no https://staging.crw2.org/data/16S/e/B.microti.3/d.16.e.B.microti.3.pdf https://staging.crw2.org/data/16S/e/B.microti.3/d.16.e.B.microti.3.bpseq.txt https://staging.crw2.org/data/16S/e/B.microti.3/d.16.e.B.microti.3.ss.txt
d.16.e.B.microti.4 16S d 16 e Eukarya   B.microti.4 16S/e/B.microti.4 no https://staging.crw2.org/data/16S/e/B.microti.4/d.16.e.B.microti.4.pdf https://staging.crw2.org/data/16S/e/B.microti.4/d.16.e.B.microti.4.bpseq.txt https://staging.crw2.org/data/16S/e/B.microti.4/d.16.e.B.microti.4.ss.txt
d.16.e.B.microti.5 16S d 16 e Eukarya   B.microti.5 16S/e/B.microti.5 no https://staging.crw2.org/data/16S/e/B.microti.5/d.16.e.B.microti.5.pdf https://staging.crw2.org/data/16S/e/B.microti.5/d.16.e.B.microti.5.bpseq.txt https://staging.crw2.org/data/16S/e/B.microti.5/d.16.e.B.microti.5.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);