RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

41 rows where domain_label = "Chloroplast" and rna_group = "16S" sorted by organism

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: diagram_code

rna_group 1

  • 16S · 41 ✖

domain_label 1

  • Chloroplast · 41 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.16.c.A.longa 16S d 16 c Chloroplast   A.longa 16S/c/A.longa no https://staging.crw2.org/data/16S/c/A.longa/d.16.c.A.longa.pdf https://staging.crw2.org/data/16S/c/A.longa/d.16.c.A.longa.bpseq.txt https://staging.crw2.org/data/16S/c/A.longa/d.16.c.A.longa.ss.txt
a.16.c.Apodanthes.sp 16S a 16 c Chloroplast   Apodanthes.sp 16S/c/Apodanthes.sp no https://staging.crw2.org/data/16S/c/Apodanthes.sp/a.16.c.Apodanthes.sp.pdf https://staging.crw2.org/data/16S/c/Apodanthes.sp/a.16.c.Apodanthes.sp.bpseq.txt https://staging.crw2.org/data/16S/c/Apodanthes.sp/a.16.c.Apodanthes.sp.ss.txt
d.16.c.B.bovis 16S d 16 c Chloroplast   B.bovis 16S/c/B.bovis no https://staging.crw2.org/data/16S/c/B.bovis/d.16.c.B.bovis.pdf https://staging.crw2.org/data/16S/c/B.bovis/d.16.c.B.bovis.bpseq.txt https://staging.crw2.org/data/16S/c/B.bovis/d.16.c.B.bovis.ss.txt
a.16.c.C.caldarium 16S a 16 c Chloroplast   C.caldarium 16S/c/C.caldarium no https://staging.crw2.org/data/16S/c/C.caldarium/a.16.c.C.caldarium.pdf https://staging.crw2.org/data/16S/c/C.caldarium/a.16.c.C.caldarium.bpseq.txt https://staging.crw2.org/data/16S/c/C.caldarium/a.16.c.C.caldarium.ss.txt
d.16.c.C.caldarium 16S d 16 c Chloroplast   C.caldarium 16S/c/C.caldarium no https://staging.crw2.org/data/16S/c/C.caldarium/d.16.c.C.caldarium.pdf https://staging.crw2.org/data/16S/c/C.caldarium/d.16.c.C.caldarium.bpseq.txt https://staging.crw2.org/data/16S/c/C.caldarium/d.16.c.C.caldarium.ss.txt
a.16.c.C.coccineum 16S a 16 c Chloroplast   C.coccineum 16S/c/C.coccineum no https://staging.crw2.org/data/16S/c/C.coccineum/a.16.c.C.coccineum.pdf https://staging.crw2.org/data/16S/c/C.coccineum/a.16.c.C.coccineum.bpseq.txt https://staging.crw2.org/data/16S/c/C.coccineum/a.16.c.C.coccineum.ss.txt
a.16.c.C.cryophyllum 16S a 16 c Chloroplast   C.cryophyllum 16S/c/C.cryophyllum no https://staging.crw2.org/data/16S/c/C.cryophyllum/a.16.c.C.cryophyllum.pdf https://staging.crw2.org/data/16S/c/C.cryophyllum/a.16.c.C.cryophyllum.bpseq.txt https://staging.crw2.org/data/16S/c/C.cryophyllum/a.16.c.C.cryophyllum.ss.txt
d.16.c.C.fragile 16S d 16 c Chloroplast   C.fragile 16S/c/C.fragile no https://staging.crw2.org/data/16S/c/C.fragile/d.16.c.C.fragile.pdf https://staging.crw2.org/data/16S/c/C.fragile/d.16.c.C.fragile.bpseq.txt https://staging.crw2.org/data/16S/c/C.fragile/d.16.c.C.fragile.ss.txt
d.16.c.C.humicola 16S d 16 c Chloroplast   C.humicola 16S/c/C.humicola no https://staging.crw2.org/data/16S/c/C.humicola/d.16.c.C.humicola.pdf https://staging.crw2.org/data/16S/c/C.humicola/d.16.c.C.humicola.bpseq.txt https://staging.crw2.org/data/16S/c/C.humicola/d.16.c.C.humicola.ss.txt
d.16.c.C.paradoxa 16S d 16 c Chloroplast   C.paradoxa 16S/c/C.paradoxa no https://staging.crw2.org/data/16S/c/C.paradoxa/d.16.c.C.paradoxa.pdf https://staging.crw2.org/data/16S/c/C.paradoxa/d.16.c.C.paradoxa.bpseq.txt https://staging.crw2.org/data/16S/c/C.paradoxa/d.16.c.C.paradoxa.ss.txt
d.16.c.C.reinhardtii 16S d 16 c Chloroplast   C.reinhardtii 16S/c/C.reinhardtii no https://staging.crw2.org/data/16S/c/C.reinhardtii/d.16.c.C.reinhardtii.pdf https://staging.crw2.org/data/16S/c/C.reinhardtii/d.16.c.C.reinhardtii.bpseq.txt https://staging.crw2.org/data/16S/c/C.reinhardtii/d.16.c.C.reinhardtii.ss.txt
a.16.c.C.ruber 16S a 16 c Chloroplast   C.ruber 16S/c/C.ruber no https://staging.crw2.org/data/16S/c/C.ruber/a.16.c.C.ruber.pdf https://staging.crw2.org/data/16S/c/C.ruber/a.16.c.C.ruber.bpseq.txt https://staging.crw2.org/data/16S/c/C.ruber/a.16.c.C.ruber.ss.txt
d.16.c.C.sertularioides 16S d 16 c Chloroplast   C.sertularioides 16S/c/C.sertularioides no https://staging.crw2.org/data/16S/c/C.sertularioides/d.16.c.C.sertularioides.pdf https://staging.crw2.org/data/16S/c/C.sertularioides/d.16.c.C.sertularioides.bpseq.txt https://staging.crw2.org/data/16S/c/C.sertularioides/d.16.c.C.sertularioides.ss.txt
d.16.c.C.vulgaris 16S d 16 c Chloroplast   C.vulgaris 16S/c/C.vulgaris no https://staging.crw2.org/data/16S/c/C.vulgaris/d.16.c.C.vulgaris.pdf https://staging.crw2.org/data/16S/c/C.vulgaris/d.16.c.C.vulgaris.bpseq.txt https://staging.crw2.org/data/16S/c/C.vulgaris/d.16.c.C.vulgaris.ss.txt
d.16.c.Cryptomonas.sp 16S d 16 c Chloroplast   Cryptomonas.sp 16S/c/Cryptomonas.sp no https://staging.crw2.org/data/16S/c/Cryptomonas.sp/d.16.c.Cryptomonas.sp.pdf https://staging.crw2.org/data/16S/c/Cryptomonas.sp/d.16.c.Cryptomonas.sp.bpseq.txt https://staging.crw2.org/data/16S/c/Cryptomonas.sp/d.16.c.Cryptomonas.sp.ss.txt
d.16.c.E.gracilis 16S d 16 c Chloroplast   E.gracilis 16S/c/E.gracilis no https://staging.crw2.org/data/16S/c/E.gracilis/d.16.c.E.gracilis.pdf https://staging.crw2.org/data/16S/c/E.gracilis/d.16.c.E.gracilis.bpseq.txt https://staging.crw2.org/data/16S/c/E.gracilis/d.16.c.E.gracilis.ss.txt
a.16.c.E.huxleyi 16S a 16 c Chloroplast   E.huxleyi 16S/c/E.huxleyi no https://staging.crw2.org/data/16S/c/E.huxleyi/a.16.c.E.huxleyi.pdf https://staging.crw2.org/data/16S/c/E.huxleyi/a.16.c.E.huxleyi.bpseq.txt https://staging.crw2.org/data/16S/c/E.huxleyi/a.16.c.E.huxleyi.ss.txt
a.16.c.G.nostochinearum 16S a 16 c Chloroplast   G.nostochinearum 16S/c/G.nostochinearum no https://staging.crw2.org/data/16S/c/G.nostochinearum/a.16.c.G.nostochinearum.pdf https://staging.crw2.org/data/16S/c/G.nostochinearum/a.16.c.G.nostochinearum.bpseq.txt https://staging.crw2.org/data/16S/c/G.nostochinearum/a.16.c.G.nostochinearum.ss.txt
a.16.c.G.wittrockiana 16S a 16 c Chloroplast   G.wittrockiana 16S/c/G.wittrockiana no https://staging.crw2.org/data/16S/c/G.wittrockiana/a.16.c.G.wittrockiana.pdf https://staging.crw2.org/data/16S/c/G.wittrockiana/a.16.c.G.wittrockiana.bpseq.txt https://staging.crw2.org/data/16S/c/G.wittrockiana/a.16.c.G.wittrockiana.ss.txt
d.16.c.H.africana 16S d 16 c Chloroplast   H.africana 16S/c/H.africana no https://staging.crw2.org/data/16S/c/H.africana/d.16.c.H.africana.pdf https://staging.crw2.org/data/16S/c/H.africana/d.16.c.H.africana.bpseq.txt https://staging.crw2.org/data/16S/c/H.africana/d.16.c.H.africana.ss.txt
d.16.c.H.akashiwo 16S d 16 c Chloroplast   H.akashiwo 16S/c/H.akashiwo no https://staging.crw2.org/data/16S/c/H.akashiwo/d.16.c.H.akashiwo.pdf https://staging.crw2.org/data/16S/c/H.akashiwo/d.16.c.H.akashiwo.bpseq.txt https://staging.crw2.org/data/16S/c/H.akashiwo/d.16.c.H.akashiwo.ss.txt
d.16.c.M.polymorpha 16S d 16 c Chloroplast   M.polymorpha 16S/c/M.polymorpha no https://staging.crw2.org/data/16S/c/M.polymorpha/d.16.c.M.polymorpha.pdf https://staging.crw2.org/data/16S/c/M.polymorpha/d.16.c.M.polymorpha.bpseq.txt https://staging.crw2.org/data/16S/c/M.polymorpha/d.16.c.M.polymorpha.ss.txt
a.16.c.M.yamamotoi 16S a 16 c Chloroplast   M.yamamotoi 16S/c/M.yamamotoi no https://staging.crw2.org/data/16S/c/M.yamamotoi/a.16.c.M.yamamotoi.pdf https://staging.crw2.org/data/16S/c/M.yamamotoi/a.16.c.M.yamamotoi.bpseq.txt https://staging.crw2.org/data/16S/c/M.yamamotoi/a.16.c.M.yamamotoi.ss.txt
d.16.c.N.olivacea 16S d 16 c Chloroplast   N.olivacea 16S/c/N.olivacea no https://staging.crw2.org/data/16S/c/N.olivacea/d.16.c.N.olivacea.pdf https://staging.crw2.org/data/16S/c/N.olivacea/d.16.c.N.olivacea.bpseq.txt https://staging.crw2.org/data/16S/c/N.olivacea/d.16.c.N.olivacea.ss.txt
d.16.c.N.tabacum 16S d 16 c Chloroplast   N.tabacum 16S/c/N.tabacum no https://staging.crw2.org/data/16S/c/N.tabacum/d.16.c.N.tabacum.pdf https://staging.crw2.org/data/16S/c/N.tabacum/d.16.c.N.tabacum.bpseq.txt https://staging.crw2.org/data/16S/c/N.tabacum/d.16.c.N.tabacum.ss.txt
d.16.c.P.falciparum 16S d 16 c Chloroplast   P.falciparum 16S/c/P.falciparum no https://staging.crw2.org/data/16S/c/P.falciparum/d.16.c.P.falciparum.pdf https://staging.crw2.org/data/16S/c/P.falciparum/d.16.c.P.falciparum.bpseq.txt https://staging.crw2.org/data/16S/c/P.falciparum/d.16.c.P.falciparum.ss.txt
d.16.c.P.littoralis 16S d 16 c Chloroplast   P.littoralis 16S/c/P.littoralis no https://staging.crw2.org/data/16S/c/P.littoralis/d.16.c.P.littoralis.pdf https://staging.crw2.org/data/16S/c/P.littoralis/d.16.c.P.littoralis.bpseq.txt https://staging.crw2.org/data/16S/c/P.littoralis/d.16.c.P.littoralis.ss.txt
d.16.c.P.minor 16S d 16 c Chloroplast   P.minor 16S/c/P.minor no https://staging.crw2.org/data/16S/c/P.minor/d.16.c.P.minor.pdf https://staging.crw2.org/data/16S/c/P.minor/d.16.c.P.minor.bpseq.txt https://staging.crw2.org/data/16S/c/P.minor/d.16.c.P.minor.ss.txt
d.16.c.P.obtusum 16S d 16 c Chloroplast   P.obtusum 16S/c/P.obtusum no https://staging.crw2.org/data/16S/c/P.obtusum/d.16.c.P.obtusum.pdf https://staging.crw2.org/data/16S/c/P.obtusum/d.16.c.P.obtusum.bpseq.txt https://staging.crw2.org/data/16S/c/P.obtusum/d.16.c.P.obtusum.ss.txt
d.16.c.P.oviforme 16S d 16 c Chloroplast   P.oviforme 16S/c/P.oviforme no https://staging.crw2.org/data/16S/c/P.oviforme/d.16.c.P.oviforme.pdf https://staging.crw2.org/data/16S/c/P.oviforme/d.16.c.P.oviforme.bpseq.txt https://staging.crw2.org/data/16S/c/P.oviforme/d.16.c.P.oviforme.ss.txt
d.16.c.P.palmata 16S d 16 c Chloroplast   P.palmata 16S/c/P.palmata no https://staging.crw2.org/data/16S/c/P.palmata/d.16.c.P.palmata.pdf https://staging.crw2.org/data/16S/c/P.palmata/d.16.c.P.palmata.bpseq.txt https://staging.crw2.org/data/16S/c/P.palmata/d.16.c.P.palmata.ss.txt
d.16.c.P.parkeae 16S d 16 c Chloroplast   P.parkeae 16S/c/P.parkeae no https://staging.crw2.org/data/16S/c/P.parkeae/d.16.c.P.parkeae.pdf https://staging.crw2.org/data/16S/c/P.parkeae/d.16.c.P.parkeae.bpseq.txt https://staging.crw2.org/data/16S/c/P.parkeae/d.16.c.P.parkeae.ss.txt
d.16.c.P.thurberi 16S d 16 c Chloroplast   P.thurberi 16S/c/P.thurberi no https://staging.crw2.org/data/16S/c/P.thurberi/d.16.c.P.thurberi.pdf https://staging.crw2.org/data/16S/c/P.thurberi/d.16.c.P.thurberi.bpseq.txt https://staging.crw2.org/data/16S/c/P.thurberi/d.16.c.P.thurberi.ss.txt
d.16.c.P.uvella 16S d 16 c Chloroplast   P.uvella 16S/c/P.uvella no https://staging.crw2.org/data/16S/c/P.uvella/d.16.c.P.uvella.pdf https://staging.crw2.org/data/16S/c/P.uvella/d.16.c.P.uvella.bpseq.txt https://staging.crw2.org/data/16S/c/P.uvella/d.16.c.P.uvella.ss.txt
d.16.c.P.vivax 16S d 16 c Chloroplast   P.vivax 16S/c/P.vivax no https://staging.crw2.org/data/16S/c/P.vivax/d.16.c.P.vivax.pdf https://staging.crw2.org/data/16S/c/P.vivax/d.16.c.P.vivax.bpseq.txt https://staging.crw2.org/data/16S/c/P.vivax/d.16.c.P.vivax.ss.txt
d.16.c.P.wickerhamii 16S d 16 c Chloroplast   P.wickerhamii 16S/c/P.wickerhamii no https://staging.crw2.org/data/16S/c/P.wickerhamii/d.16.c.P.wickerhamii.pdf https://staging.crw2.org/data/16S/c/P.wickerhamii/d.16.c.P.wickerhamii.bpseq.txt https://staging.crw2.org/data/16S/c/P.wickerhamii/d.16.c.P.wickerhamii.ss.txt
d.16.c.R.communis 16S d 16 c Chloroplast   R.communis 16S/c/R.communis no https://staging.crw2.org/data/16S/c/R.communis/d.16.c.R.communis.pdf https://staging.crw2.org/data/16S/c/R.communis/d.16.c.R.communis.bpseq.txt https://staging.crw2.org/data/16S/c/R.communis/d.16.c.R.communis.ss.txt
d.16.c.S.oleracea 16S d 16 c Chloroplast   S.oleracea 16S/c/S.oleracea no https://staging.crw2.org/data/16S/c/S.oleracea/d.16.c.S.oleracea.pdf https://staging.crw2.org/data/16S/c/S.oleracea/d.16.c.S.oleracea.bpseq.txt https://staging.crw2.org/data/16S/c/S.oleracea/d.16.c.S.oleracea.ss.txt
d.16.c.S.pseudocostatum 16S d 16 c Chloroplast   S.pseudocostatum 16S/c/S.pseudocostatum no https://staging.crw2.org/data/16S/c/S.pseudocostatum/d.16.c.S.pseudocostatum.pdf https://staging.crw2.org/data/16S/c/S.pseudocostatum/d.16.c.S.pseudocostatum.bpseq.txt https://staging.crw2.org/data/16S/c/S.pseudocostatum/d.16.c.S.pseudocostatum.ss.txt
d.16.c.T.gondii 16S d 16 c Chloroplast   T.gondii 16S/c/T.gondii no https://staging.crw2.org/data/16S/c/T.gondii/d.16.c.T.gondii.pdf https://staging.crw2.org/data/16S/c/T.gondii/d.16.c.T.gondii.bpseq.txt https://staging.crw2.org/data/16S/c/T.gondii/d.16.c.T.gondii.ss.txt
d.16.c.Z.mays 16S d 16 c Chloroplast   Z.mays 16S/c/Z.mays no https://staging.crw2.org/data/16S/c/Z.mays/d.16.c.Z.mays.pdf https://staging.crw2.org/data/16S/c/Z.mays/d.16.c.Z.mays.bpseq.txt https://staging.crw2.org/data/16S/c/Z.mays/d.16.c.Z.mays.ss.txt

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);