RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

281 rows where domain_label = "Bacteria" and rna_group = "16S" sorted by organism

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rna_group 1

  • 16S · 281 ✖

domain_label 1

  • Bacteria · 281 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.16.b.A.aeolicus 16S d 16 b Bacteria   A.aeolicus 16S/b/A.aeolicus no https://staging.crw2.org/data/16S/b/A.aeolicus/d.16.b.A.aeolicus.pdf https://staging.crw2.org/data/16S/b/A.aeolicus/d.16.b.A.aeolicus.bpseq.txt https://staging.crw2.org/data/16S/b/A.aeolicus/d.16.b.A.aeolicus.ss.txt
d.16.b.A.calcoaceticus 16S d 16 b Bacteria   A.calcoaceticus 16S/b/A.calcoaceticus no https://staging.crw2.org/data/16S/b/A.calcoaceticus/d.16.b.A.calcoaceticus.pdf https://staging.crw2.org/data/16S/b/A.calcoaceticus/d.16.b.A.calcoaceticus.bpseq.txt https://staging.crw2.org/data/16S/b/A.calcoaceticus/d.16.b.A.calcoaceticus.ss.txt
d.16.b.A.capsulatum 16S d 16 b Bacteria   A.capsulatum 16S/b/A.capsulatum no https://staging.crw2.org/data/16S/b/A.capsulatum/d.16.b.A.capsulatum.pdf https://staging.crw2.org/data/16S/b/A.capsulatum/d.16.b.A.capsulatum.bpseq.txt https://staging.crw2.org/data/16S/b/A.capsulatum/d.16.b.A.capsulatum.ss.txt
d.16.b.A.caulinodans 16S d 16 b Bacteria   A.caulinodans 16S/b/A.caulinodans no https://staging.crw2.org/data/16S/b/A.caulinodans/d.16.b.A.caulinodans.pdf https://staging.crw2.org/data/16S/b/A.caulinodans/d.16.b.A.caulinodans.bpseq.txt https://staging.crw2.org/data/16S/b/A.caulinodans/d.16.b.A.caulinodans.ss.txt
d.16.b.A.globiformis 16S d 16 b Bacteria   A.globiformis 16S/b/A.globiformis no https://staging.crw2.org/data/16S/b/A.globiformis/d.16.b.A.globiformis.pdf https://staging.crw2.org/data/16S/b/A.globiformis/d.16.b.A.globiformis.bpseq.txt https://staging.crw2.org/data/16S/b/A.globiformis/d.16.b.A.globiformis.ss.txt
d.16.b.A.hydrophila 16S d 16 b Bacteria   A.hydrophila 16S/b/A.hydrophila no https://staging.crw2.org/data/16S/b/A.hydrophila/d.16.b.A.hydrophila.pdf https://staging.crw2.org/data/16S/b/A.hydrophila/d.16.b.A.hydrophila.bpseq.txt https://staging.crw2.org/data/16S/b/A.hydrophila/d.16.b.A.hydrophila.ss.txt
d.16.b.A.israelii 16S d 16 b Bacteria   A.israelii 16S/b/A.israelii no https://staging.crw2.org/data/16S/b/A.israelii/d.16.b.A.israelii.pdf https://staging.crw2.org/data/16S/b/A.israelii/d.16.b.A.israelii.bpseq.txt https://staging.crw2.org/data/16S/b/A.israelii/d.16.b.A.israelii.ss.txt
d.16.b.A.pyrophilus 16S d 16 b Bacteria   A.pyrophilus 16S/b/A.pyrophilus no https://staging.crw2.org/data/16S/b/A.pyrophilus/d.16.b.A.pyrophilus.pdf https://staging.crw2.org/data/16S/b/A.pyrophilus/d.16.b.A.pyrophilus.bpseq.txt https://staging.crw2.org/data/16S/b/A.pyrophilus/d.16.b.A.pyrophilus.ss.txt
d.16.b.A.tumefaciens 16S d 16 b Bacteria   A.tumefaciens 16S/b/A.tumefaciens no https://staging.crw2.org/data/16S/b/A.tumefaciens/d.16.b.A.tumefaciens.pdf https://staging.crw2.org/data/16S/b/A.tumefaciens/d.16.b.A.tumefaciens.bpseq.txt https://staging.crw2.org/data/16S/b/A.tumefaciens/d.16.b.A.tumefaciens.ss.txt
d.16.b.A.tumefaciens.Normand 16S d 16 b Bacteria   A.tumefaciens.Normand 16S/b/A.tumefaciens.Normand no https://staging.crw2.org/data/16S/b/A.tumefaciens.Normand/d.16.b.A.tumefaciens.Normand.pdf https://staging.crw2.org/data/16S/b/A.tumefaciens.Normand/d.16.b.A.tumefaciens.Normand.bpseq.txt https://staging.crw2.org/data/16S/b/A.tumefaciens.Normand/d.16.b.A.tumefaciens.Normand.ss.txt
d.16.b.A.vinosum 16S d 16 b Bacteria   A.vinosum 16S/b/A.vinosum no https://staging.crw2.org/data/16S/b/A.vinosum/d.16.b.A.vinosum.pdf https://staging.crw2.org/data/16S/b/A.vinosum/d.16.b.A.vinosum.bpseq.txt https://staging.crw2.org/data/16S/b/A.vinosum/d.16.b.A.vinosum.ss.txt
d.16.b.Anabaena.sp 16S d 16 b Bacteria   Anabaena.sp 16S/b/Anabaena.sp no https://staging.crw2.org/data/16S/b/Anabaena.sp/d.16.b.Anabaena.sp.pdf https://staging.crw2.org/data/16S/b/Anabaena.sp/d.16.b.Anabaena.sp.bpseq.txt https://staging.crw2.org/data/16S/b/Anabaena.sp/d.16.b.Anabaena.sp.ss.txt
d.16.b.B.abortus 16S d 16 b Bacteria   B.abortus 16S/b/B.abortus no https://staging.crw2.org/data/16S/b/B.abortus/d.16.b.B.abortus.pdf https://staging.crw2.org/data/16S/b/B.abortus/d.16.b.B.abortus.bpseq.txt https://staging.crw2.org/data/16S/b/B.abortus/d.16.b.B.abortus.ss.txt
d.16.b.B.andersonii 16S d 16 b Bacteria   B.andersonii 16S/b/B.andersonii no https://staging.crw2.org/data/16S/b/B.andersonii/d.16.b.B.andersonii.pdf https://staging.crw2.org/data/16S/b/B.andersonii/d.16.b.B.andersonii.bpseq.txt https://staging.crw2.org/data/16S/b/B.andersonii/d.16.b.B.andersonii.ss.txt
d.16.b.B.anthracis 16S d 16 b Bacteria   B.anthracis 16S/b/B.anthracis no https://staging.crw2.org/data/16S/b/B.anthracis/d.16.b.B.anthracis.pdf https://staging.crw2.org/data/16S/b/B.anthracis/d.16.b.B.anthracis.bpseq.txt https://staging.crw2.org/data/16S/b/B.anthracis/d.16.b.B.anthracis.ss.txt
d.16.b.B.bacilliformis 16S d 16 b Bacteria   B.bacilliformis 16S/b/B.bacilliformis no https://staging.crw2.org/data/16S/b/B.bacilliformis/d.16.b.B.bacilliformis.pdf https://staging.crw2.org/data/16S/b/B.bacilliformis/d.16.b.B.bacilliformis.bpseq.txt https://staging.crw2.org/data/16S/b/B.bacilliformis/d.16.b.B.bacilliformis.ss.txt
d.16.b.B.bronchiseptica2 16S d 16 b Bacteria   B.bronchiseptica2 16S/b/B.bronchiseptica2 no https://staging.crw2.org/data/16S/b/B.bronchiseptica2/d.16.b.B.bronchiseptica2.pdf https://staging.crw2.org/data/16S/b/B.bronchiseptica2/d.16.b.B.bronchiseptica2.bpseq.txt https://staging.crw2.org/data/16S/b/B.bronchiseptica2/d.16.b.B.bronchiseptica2.ss.txt
d.16.b.B.burgdorferi 16S d 16 b Bacteria   B.burgdorferi 16S/b/B.burgdorferi no https://staging.crw2.org/data/16S/b/B.burgdorferi/d.16.b.B.burgdorferi.pdf https://staging.crw2.org/data/16S/b/B.burgdorferi/d.16.b.B.burgdorferi.bpseq.txt https://staging.crw2.org/data/16S/b/B.burgdorferi/d.16.b.B.burgdorferi.ss.txt
d.16.b.B.burgdorferi.GEN 16S d 16 b Bacteria   B.burgdorferi.GEN 16S/b/B.burgdorferi.GEN no https://staging.crw2.org/data/16S/b/B.burgdorferi.GEN/d.16.b.B.burgdorferi.GEN.pdf https://staging.crw2.org/data/16S/b/B.burgdorferi.GEN/d.16.b.B.burgdorferi.GEN.bpseq.txt https://staging.crw2.org/data/16S/b/B.burgdorferi.GEN/d.16.b.B.burgdorferi.GEN.ss.txt
d.16.b.B.cereus.1 16S d 16 b Bacteria   B.cereus.1 16S/b/B.cereus.1 no https://staging.crw2.org/data/16S/b/B.cereus.1/d.16.b.B.cereus.1.pdf https://staging.crw2.org/data/16S/b/B.cereus.1/d.16.b.B.cereus.1.bpseq.txt https://staging.crw2.org/data/16S/b/B.cereus.1/d.16.b.B.cereus.1.ss.txt
d.16.b.B.fragilis 16S d 16 b Bacteria   B.fragilis 16S/b/B.fragilis no https://staging.crw2.org/data/16S/b/B.fragilis/d.16.b.B.fragilis.pdf https://staging.crw2.org/data/16S/b/B.fragilis/d.16.b.B.fragilis.bpseq.txt https://staging.crw2.org/data/16S/b/B.fragilis/d.16.b.B.fragilis.ss.txt
d.16.b.B.halodurans 16S d 16 b Bacteria   B.halodurans 16S/b/B.halodurans no https://staging.crw2.org/data/16S/b/B.halodurans/d.16.b.B.halodurans.pdf https://staging.crw2.org/data/16S/b/B.halodurans/d.16.b.B.halodurans.bpseq.txt https://staging.crw2.org/data/16S/b/B.halodurans/d.16.b.B.halodurans.ss.txt
d.16.b.B.henselae 16S d 16 b Bacteria   B.henselae 16S/b/B.henselae no https://staging.crw2.org/data/16S/b/B.henselae/d.16.b.B.henselae.pdf https://staging.crw2.org/data/16S/b/B.henselae/d.16.b.B.henselae.bpseq.txt https://staging.crw2.org/data/16S/b/B.henselae/d.16.b.B.henselae.ss.txt
d.16.b.B.hermsii 16S d 16 b Bacteria   B.hermsii 16S/b/B.hermsii no https://staging.crw2.org/data/16S/b/B.hermsii/d.16.b.B.hermsii.pdf https://staging.crw2.org/data/16S/b/B.hermsii/d.16.b.B.hermsii.bpseq.txt https://staging.crw2.org/data/16S/b/B.hermsii/d.16.b.B.hermsii.ss.txt
d.16.b.B.hyodysenteriae 16S d 16 b Bacteria   B.hyodysenteriae 16S/b/B.hyodysenteriae no https://staging.crw2.org/data/16S/b/B.hyodysenteriae/d.16.b.B.hyodysenteriae.pdf https://staging.crw2.org/data/16S/b/B.hyodysenteriae/d.16.b.B.hyodysenteriae.bpseq.txt https://staging.crw2.org/data/16S/b/B.hyodysenteriae/d.16.b.B.hyodysenteriae.ss.txt
d.16.b.B.japonicum 16S d 16 b Bacteria   B.japonicum 16S/b/B.japonicum no https://staging.crw2.org/data/16S/b/B.japonicum/d.16.b.B.japonicum.pdf https://staging.crw2.org/data/16S/b/B.japonicum/d.16.b.B.japonicum.bpseq.txt https://staging.crw2.org/data/16S/b/B.japonicum/d.16.b.B.japonicum.ss.txt
d.16.b.B.mallei 16S d 16 b Bacteria   B.mallei 16S/b/B.mallei no https://staging.crw2.org/data/16S/b/B.mallei/d.16.b.B.mallei.pdf https://staging.crw2.org/data/16S/b/B.mallei/d.16.b.B.mallei.bpseq.txt https://staging.crw2.org/data/16S/b/B.mallei/d.16.b.B.mallei.ss.txt
d.16.b.B.melitensis 16S d 16 b Bacteria   B.melitensis 16S/b/B.melitensis no https://staging.crw2.org/data/16S/b/B.melitensis/d.16.b.B.melitensis.pdf https://staging.crw2.org/data/16S/b/B.melitensis/d.16.b.B.melitensis.bpseq.txt https://staging.crw2.org/data/16S/b/B.melitensis/d.16.b.B.melitensis.ss.txt
d.16.b.B.parapertussis 16S d 16 b Bacteria   B.parapertussis 16S/b/B.parapertussis no https://staging.crw2.org/data/16S/b/B.parapertussis/d.16.b.B.parapertussis.pdf https://staging.crw2.org/data/16S/b/B.parapertussis/d.16.b.B.parapertussis.bpseq.txt https://staging.crw2.org/data/16S/b/B.parapertussis/d.16.b.B.parapertussis.ss.txt
d.16.b.B.pertussis 16S d 16 b Bacteria   B.pertussis 16S/b/B.pertussis no https://staging.crw2.org/data/16S/b/B.pertussis/d.16.b.B.pertussis.pdf https://staging.crw2.org/data/16S/b/B.pertussis/d.16.b.B.pertussis.bpseq.txt https://staging.crw2.org/data/16S/b/B.pertussis/d.16.b.B.pertussis.ss.txt
d.16.b.B.quintana 16S d 16 b Bacteria   B.quintana 16S/b/B.quintana no https://staging.crw2.org/data/16S/b/B.quintana/d.16.b.B.quintana.pdf https://staging.crw2.org/data/16S/b/B.quintana/d.16.b.B.quintana.bpseq.txt https://staging.crw2.org/data/16S/b/B.quintana/d.16.b.B.quintana.ss.txt
d.16.b.B.subtilis 16S d 16 b Bacteria   B.subtilis 16S/b/B.subtilis no https://staging.crw2.org/data/16S/b/B.subtilis/d.16.b.B.subtilis.pdf https://staging.crw2.org/data/16S/b/B.subtilis/d.16.b.B.subtilis.bpseq.txt https://staging.crw2.org/data/16S/b/B.subtilis/d.16.b.B.subtilis.ss.txt
d.16.b.B.subtilis.GEN 16S d 16 b Bacteria   B.subtilis.GEN 16S/b/B.subtilis.GEN no https://staging.crw2.org/data/16S/b/B.subtilis.GEN/d.16.b.B.subtilis.GEN.pdf https://staging.crw2.org/data/16S/b/B.subtilis.GEN/d.16.b.B.subtilis.GEN.bpseq.txt https://staging.crw2.org/data/16S/b/B.subtilis.GEN/d.16.b.B.subtilis.GEN.ss.txt
d.16.b.B.suis 16S d 16 b Bacteria   B.suis 16S/b/B.suis no https://staging.crw2.org/data/16S/b/B.suis/d.16.b.B.suis.pdf https://staging.crw2.org/data/16S/b/B.suis/d.16.b.B.suis.bpseq.txt https://staging.crw2.org/data/16S/b/B.suis/d.16.b.B.suis.ss.txt
d.16.b.Beggiatoa.sp 16S d 16 b Bacteria   Beggiatoa.sp 16S/b/Beggiatoa.sp no https://staging.crw2.org/data/16S/b/Beggiatoa.sp/d.16.b.Beggiatoa.sp.pdf https://staging.crw2.org/data/16S/b/Beggiatoa.sp/d.16.b.Beggiatoa.sp.bpseq.txt https://staging.crw2.org/data/16S/b/Beggiatoa.sp/d.16.b.Beggiatoa.sp.ss.txt
d.16.b.Buchnera.sp.APS 16S d 16 b Bacteria   Buchnera.sp.APS 16S/b/Buchnera.sp.APS no https://staging.crw2.org/data/16S/b/Buchnera.sp.APS/d.16.b.Buchnera.sp.APS.pdf https://staging.crw2.org/data/16S/b/Buchnera.sp.APS/d.16.b.Buchnera.sp.APS.bpseq.txt https://staging.crw2.org/data/16S/b/Buchnera.sp.APS/d.16.b.Buchnera.sp.APS.ss.txt
d.16.b.Burkholderia.sp 16S d 16 b Bacteria   Burkholderia.sp 16S/b/Burkholderia.sp no https://staging.crw2.org/data/16S/b/Burkholderia.sp/d.16.b.Burkholderia.sp.pdf https://staging.crw2.org/data/16S/b/Burkholderia.sp/d.16.b.Burkholderia.sp.bpseq.txt https://staging.crw2.org/data/16S/b/Burkholderia.sp/d.16.b.Burkholderia.sp.ss.txt
d.16.b.C.botulinum.F 16S d 16 b Bacteria   C.botulinum.F 16S/b/C.botulinum.F no https://staging.crw2.org/data/16S/b/C.botulinum.F/d.16.b.C.botulinum.F.pdf https://staging.crw2.org/data/16S/b/C.botulinum.F/d.16.b.C.botulinum.F.bpseq.txt https://staging.crw2.org/data/16S/b/C.botulinum.F/d.16.b.C.botulinum.F.ss.txt
d.16.b.C.burnetii 16S d 16 b Bacteria   C.burnetii 16S/b/C.burnetii no https://staging.crw2.org/data/16S/b/C.burnetii/d.16.b.C.burnetii.pdf https://staging.crw2.org/data/16S/b/C.burnetii/d.16.b.C.burnetii.bpseq.txt https://staging.crw2.org/data/16S/b/C.burnetii/d.16.b.C.burnetii.ss.txt
d.16.b.C.difficile 16S d 16 b Bacteria   C.difficile 16S/b/C.difficile no https://staging.crw2.org/data/16S/b/C.difficile/d.16.b.C.difficile.pdf https://staging.crw2.org/data/16S/b/C.difficile/d.16.b.C.difficile.bpseq.txt https://staging.crw2.org/data/16S/b/C.difficile/d.16.b.C.difficile.ss.txt
d.16.b.C.diphtheriae 16S d 16 b Bacteria   C.diphtheriae 16S/b/C.diphtheriae no https://staging.crw2.org/data/16S/b/C.diphtheriae/d.16.b.C.diphtheriae.pdf https://staging.crw2.org/data/16S/b/C.diphtheriae/d.16.b.C.diphtheriae.bpseq.txt https://staging.crw2.org/data/16S/b/C.diphtheriae/d.16.b.C.diphtheriae.ss.txt
d.16.b.C.freundii 16S d 16 b Bacteria   C.freundii 16S/b/C.freundii no https://staging.crw2.org/data/16S/b/C.freundii/d.16.b.C.freundii.pdf https://staging.crw2.org/data/16S/b/C.freundii/d.16.b.C.freundii.bpseq.txt https://staging.crw2.org/data/16S/b/C.freundii/d.16.b.C.freundii.ss.txt
d.16.b.C.innocuum 16S d 16 b Bacteria   C.innocuum 16S/b/C.innocuum no https://staging.crw2.org/data/16S/b/C.innocuum/d.16.b.C.innocuum.pdf https://staging.crw2.org/data/16S/b/C.innocuum/d.16.b.C.innocuum.bpseq.txt https://staging.crw2.org/data/16S/b/C.innocuum/d.16.b.C.innocuum.ss.txt
d.16.b.C.jejuni 16S d 16 b Bacteria   C.jejuni 16S/b/C.jejuni no https://staging.crw2.org/data/16S/b/C.jejuni/d.16.b.C.jejuni.pdf https://staging.crw2.org/data/16S/b/C.jejuni/d.16.b.C.jejuni.bpseq.txt https://staging.crw2.org/data/16S/b/C.jejuni/d.16.b.C.jejuni.ss.txt
d.16.b.C.jejuni.GEN 16S d 16 b Bacteria   C.jejuni.GEN 16S/b/C.jejuni.GEN no https://staging.crw2.org/data/16S/b/C.jejuni.GEN/d.16.b.C.jejuni.GEN.pdf https://staging.crw2.org/data/16S/b/C.jejuni.GEN/d.16.b.C.jejuni.GEN.bpseq.txt https://staging.crw2.org/data/16S/b/C.jejuni.GEN/d.16.b.C.jejuni.GEN.ss.txt
d.16.b.C.marismortui 16S d 16 b Bacteria   C.marismortui 16S/b/C.marismortui no https://staging.crw2.org/data/16S/b/C.marismortui/d.16.b.C.marismortui.pdf https://staging.crw2.org/data/16S/b/C.marismortui/d.16.b.C.marismortui.bpseq.txt https://staging.crw2.org/data/16S/b/C.marismortui/d.16.b.C.marismortui.ss.txt
d.16.b.C.muridarum 16S d 16 b Bacteria   C.muridarum 16S/b/C.muridarum no https://staging.crw2.org/data/16S/b/C.muridarum/d.16.b.C.muridarum.pdf https://staging.crw2.org/data/16S/b/C.muridarum/d.16.b.C.muridarum.bpseq.txt https://staging.crw2.org/data/16S/b/C.muridarum/d.16.b.C.muridarum.ss.txt
d.16.b.C.perfringens 16S d 16 b Bacteria   C.perfringens 16S/b/C.perfringens no https://staging.crw2.org/data/16S/b/C.perfringens/d.16.b.C.perfringens.pdf https://staging.crw2.org/data/16S/b/C.perfringens/d.16.b.C.perfringens.bpseq.txt https://staging.crw2.org/data/16S/b/C.perfringens/d.16.b.C.perfringens.ss.txt
d.16.b.C.pneumoniae 16S d 16 b Bacteria   C.pneumoniae 16S/b/C.pneumoniae no https://staging.crw2.org/data/16S/b/C.pneumoniae/d.16.b.C.pneumoniae.pdf https://staging.crw2.org/data/16S/b/C.pneumoniae/d.16.b.C.pneumoniae.bpseq.txt https://staging.crw2.org/data/16S/b/C.pneumoniae/d.16.b.C.pneumoniae.ss.txt
d.16.b.C.pneumoniae.AR39 16S d 16 b Bacteria   C.pneumoniae.AR39 16S/b/C.pneumoniae.AR39 no https://staging.crw2.org/data/16S/b/C.pneumoniae.AR39/d.16.b.C.pneumoniae.AR39.pdf https://staging.crw2.org/data/16S/b/C.pneumoniae.AR39/d.16.b.C.pneumoniae.AR39.bpseq.txt https://staging.crw2.org/data/16S/b/C.pneumoniae.AR39/d.16.b.C.pneumoniae.AR39.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);