RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

51 rows where domain_label = "Archaea" and rna_group = "23S" sorted by organism

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Suggested facets: diagram_code, molecule_code, organism, source_folder

rna_group 1

  • 23S · 51 ✖

domain_label 1

  • Archaea · 51 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
b.23.a.A.fulgidus 23S b 23 a Archaea   A.fulgidus 23S/a/A.fulgidus no   https://staging.crw2.org/data/23S/a/A.fulgidus/b.23.a.A.fulgidus.bpseq.txt  
b.233.a.A.fulgidus 23S b 233 a Archaea   A.fulgidus 23S/a/A.fulgidus no   https://staging.crw2.org/data/23S/a/A.fulgidus/b.233.a.A.fulgidus.bpseq.txt https://staging.crw2.org/data/23S/a/A.fulgidus/b.233.a.A.fulgidus.ss.txt
b.235.a.A.fulgidus 23S b 235 a Archaea   A.fulgidus 23S/a/A.fulgidus no https://staging.crw2.org/data/23S/a/A.fulgidus/b.235.a.A.fulgidus.pdf https://staging.crw2.org/data/23S/a/A.fulgidus/b.235.a.A.fulgidus.bpseq.txt https://staging.crw2.org/data/23S/a/A.fulgidus/b.235.a.A.fulgidus.ss.txt
b.23.a.D.mobilis 23S b 23 a Archaea   D.mobilis 23S/a/D.mobilis no   https://staging.crw2.org/data/23S/a/D.mobilis/b.23.a.D.mobilis.bpseq.txt  
b.233.a.D.mobilis 23S b 233 a Archaea   D.mobilis 23S/a/D.mobilis no https://staging.crw2.org/data/23S/a/D.mobilis/b.233.a.D.mobilis.pdf https://staging.crw2.org/data/23S/a/D.mobilis/b.233.a.D.mobilis.bpseq.txt https://staging.crw2.org/data/23S/a/D.mobilis/b.233.a.D.mobilis.ss.txt
b.235.a.D.mobilis 23S b 235 a Archaea   D.mobilis 23S/a/D.mobilis no   https://staging.crw2.org/data/23S/a/D.mobilis/b.235.a.D.mobilis.bpseq.txt https://staging.crw2.org/data/23S/a/D.mobilis/b.235.a.D.mobilis.ss.txt
b.23.a.H.halobium 23S b 23 a Archaea   H.halobium 23S/a/H.halobium no   https://staging.crw2.org/data/23S/a/H.halobium/b.23.a.H.halobium.bpseq.txt  
b.233.a.H.halobium 23S b 233 a Archaea   H.halobium 23S/a/H.halobium no https://staging.crw2.org/data/23S/a/H.halobium/b.233.a.H.halobium.pdf https://staging.crw2.org/data/23S/a/H.halobium/b.233.a.H.halobium.bpseq.txt https://staging.crw2.org/data/23S/a/H.halobium/b.233.a.H.halobium.ss.txt
b.235.a.H.halobium 23S b 235 a Archaea   H.halobium 23S/a/H.halobium no   https://staging.crw2.org/data/23S/a/H.halobium/b.235.a.H.halobium.bpseq.txt https://staging.crw2.org/data/23S/a/H.halobium/b.235.a.H.halobium.ss.txt
d.23.a.H.marismortui.1 23S d 23 a Archaea   H.marismortui.1 23S/a/H.marismortui.1 no   https://staging.crw2.org/data/23S/a/H.marismortui.1/d.23.a.H.marismortui.1.bpseq.txt  
d.233.a.H.marismortui.1 23S d 233 a Archaea   H.marismortui.1 23S/a/H.marismortui.1 no https://staging.crw2.org/data/23S/a/H.marismortui.1/d.233.a.H.marismortui.1.pdf https://staging.crw2.org/data/23S/a/H.marismortui.1/d.233.a.H.marismortui.1.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.1/d.233.a.H.marismortui.1.ss.txt
d.235.a.H.marismortui.1 23S d 235 a Archaea   H.marismortui.1 23S/a/H.marismortui.1 no https://staging.crw2.org/data/23S/a/H.marismortui.1/d.235.a.H.marismortui.1.pdf https://staging.crw2.org/data/23S/a/H.marismortui.1/d.235.a.H.marismortui.1.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.1/d.235.a.H.marismortui.1.ss.txt
d.23.a.H.marismortui.2 23S d 23 a Archaea   H.marismortui.2 23S/a/H.marismortui.2 no   https://staging.crw2.org/data/23S/a/H.marismortui.2/d.23.a.H.marismortui.2.bpseq.txt  
d.233.a.H.marismortui.2 23S d 233 a Archaea   H.marismortui.2 23S/a/H.marismortui.2 no https://staging.crw2.org/data/23S/a/H.marismortui.2/d.233.a.H.marismortui.2.pdf https://staging.crw2.org/data/23S/a/H.marismortui.2/d.233.a.H.marismortui.2.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.2/d.233.a.H.marismortui.2.ss.txt
d.235.a.H.marismortui.2 23S d 235 a Archaea   H.marismortui.2 23S/a/H.marismortui.2 no https://staging.crw2.org/data/23S/a/H.marismortui.2/d.235.a.H.marismortui.2.pdf https://staging.crw2.org/data/23S/a/H.marismortui.2/d.235.a.H.marismortui.2.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.2/d.235.a.H.marismortui.2.ss.txt
d.23.a.H.marismortui.3 23S d 23 a Archaea   H.marismortui.3 23S/a/H.marismortui.3 no   https://staging.crw2.org/data/23S/a/H.marismortui.3/d.23.a.H.marismortui.3.bpseq.txt  
d.233.a.H.marismortui.3 23S d 233 a Archaea   H.marismortui.3 23S/a/H.marismortui.3 no https://staging.crw2.org/data/23S/a/H.marismortui.3/d.233.a.H.marismortui.3.pdf https://staging.crw2.org/data/23S/a/H.marismortui.3/d.233.a.H.marismortui.3.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.3/d.233.a.H.marismortui.3.ss.txt
d.235.a.H.marismortui.3 23S d 235 a Archaea   H.marismortui.3 23S/a/H.marismortui.3 no https://staging.crw2.org/data/23S/a/H.marismortui.3/d.235.a.H.marismortui.3.pdf https://staging.crw2.org/data/23S/a/H.marismortui.3/d.235.a.H.marismortui.3.bpseq.txt https://staging.crw2.org/data/23S/a/H.marismortui.3/d.235.a.H.marismortui.3.ss.txt
b.23.a.H.morrhuae 23S b 23 a Archaea   H.morrhuae 23S/a/H.morrhuae no   https://staging.crw2.org/data/23S/a/H.morrhuae/b.23.a.H.morrhuae.bpseq.txt  
b.233.a.H.morrhuae 23S b 233 a Archaea   H.morrhuae 23S/a/H.morrhuae no   https://staging.crw2.org/data/23S/a/H.morrhuae/b.233.a.H.morrhuae.bpseq.txt https://staging.crw2.org/data/23S/a/H.morrhuae/b.233.a.H.morrhuae.ss.txt
b.235.a.H.morrhuae 23S b 235 a Archaea   H.morrhuae 23S/a/H.morrhuae no https://staging.crw2.org/data/23S/a/H.morrhuae/b.235.a.H.morrhuae.pdf https://staging.crw2.org/data/23S/a/H.morrhuae/b.235.a.H.morrhuae.bpseq.txt https://staging.crw2.org/data/23S/a/H.morrhuae/b.235.a.H.morrhuae.ss.txt
b.23.a.H.volcanii 23S b 23 a Archaea   H.volcanii 23S/a/H.volcanii no   https://staging.crw2.org/data/23S/a/H.volcanii/b.23.a.H.volcanii.bpseq.txt  
b.233.a.H.volcanii 23S b 233 a Archaea   H.volcanii 23S/a/H.volcanii no https://staging.crw2.org/data/23S/a/H.volcanii/b.233.a.H.volcanii.pdf https://staging.crw2.org/data/23S/a/H.volcanii/b.233.a.H.volcanii.bpseq.txt https://staging.crw2.org/data/23S/a/H.volcanii/b.233.a.H.volcanii.ss.txt
b.235.a.H.volcanii 23S b 235 a Archaea   H.volcanii 23S/a/H.volcanii no   https://staging.crw2.org/data/23S/a/H.volcanii/b.235.a.H.volcanii.bpseq.txt https://staging.crw2.org/data/23S/a/H.volcanii/b.235.a.H.volcanii.ss.txt
b.23.a.M.hungatei 23S b 23 a Archaea   M.hungatei 23S/a/M.hungatei no   https://staging.crw2.org/data/23S/a/M.hungatei/b.23.a.M.hungatei.bpseq.txt  
b.233.a.M.hungatei 23S b 233 a Archaea   M.hungatei 23S/a/M.hungatei no   https://staging.crw2.org/data/23S/a/M.hungatei/b.233.a.M.hungatei.bpseq.txt https://staging.crw2.org/data/23S/a/M.hungatei/b.233.a.M.hungatei.ss.txt
b.235.a.M.hungatei 23S b 235 a Archaea   M.hungatei 23S/a/M.hungatei no https://staging.crw2.org/data/23S/a/M.hungatei/b.235.a.M.hungatei.pdf https://staging.crw2.org/data/23S/a/M.hungatei/b.235.a.M.hungatei.bpseq.txt https://staging.crw2.org/data/23S/a/M.hungatei/b.235.a.M.hungatei.ss.txt
d.23.a.M.jannaschii 23S d 23 a Archaea   M.jannaschii 23S/a/M.jannaschii no   https://staging.crw2.org/data/23S/a/M.jannaschii/d.23.a.M.jannaschii.bpseq.txt  
d.233.a.M.jannaschii 23S d 233 a Archaea   M.jannaschii 23S/a/M.jannaschii no https://staging.crw2.org/data/23S/a/M.jannaschii/d.233.a.M.jannaschii.pdf https://staging.crw2.org/data/23S/a/M.jannaschii/d.233.a.M.jannaschii.bpseq.txt https://staging.crw2.org/data/23S/a/M.jannaschii/d.233.a.M.jannaschii.ss.txt
d.235.a.M.jannaschii 23S d 235 a Archaea   M.jannaschii 23S/a/M.jannaschii no https://staging.crw2.org/data/23S/a/M.jannaschii/d.235.a.M.jannaschii.pdf https://staging.crw2.org/data/23S/a/M.jannaschii/d.235.a.M.jannaschii.bpseq.txt https://staging.crw2.org/data/23S/a/M.jannaschii/d.235.a.M.jannaschii.ss.txt
b.23.a.M.thermoautotrophicus 23S b 23 a Archaea   M.thermoautotrophicus 23S/a/M.thermoautotrophicus no   https://staging.crw2.org/data/23S/a/M.thermoautotrophicus/b.23.a.M.thermoautotrophicus.bpseq.txt  
b.233.a.M.thermoautotrophicus 23S b 233 a Archaea   M.thermoautotrophicus 23S/a/M.thermoautotrophicus no https://staging.crw2.org/data/23S/a/M.thermoautotrophicus/b.233.a.M.thermoautotrophicus.pdf https://staging.crw2.org/data/23S/a/M.thermoautotrophicus/b.233.a.M.thermoautotrophicus.bpseq.txt https://staging.crw2.org/data/23S/a/M.thermoautotrophicus/b.233.a.M.thermoautotrophicus.ss.txt
b.235.a.M.thermoautotrophicus 23S b 235 a Archaea   M.thermoautotrophicus 23S/a/M.thermoautotrophicus no https://staging.crw2.org/data/23S/a/M.thermoautotrophicus/b.235.a.M.thermoautotrophicus.pdf https://staging.crw2.org/data/23S/a/M.thermoautotrophicus/b.235.a.M.thermoautotrophicus.bpseq.txt https://staging.crw2.org/data/23S/a/M.thermoautotrophicus/b.235.a.M.thermoautotrophicus.ss.txt
b.23.a.M.vannielii 23S b 23 a Archaea   M.vannielii 23S/a/M.vannielii no   https://staging.crw2.org/data/23S/a/M.vannielii/b.23.a.M.vannielii.bpseq.txt  
b.233.a.M.vannielii 23S b 233 a Archaea   M.vannielii 23S/a/M.vannielii no   https://staging.crw2.org/data/23S/a/M.vannielii/b.233.a.M.vannielii.bpseq.txt https://staging.crw2.org/data/23S/a/M.vannielii/b.233.a.M.vannielii.ss.txt
b.235.a.M.vannielii 23S b 235 a Archaea   M.vannielii 23S/a/M.vannielii no https://staging.crw2.org/data/23S/a/M.vannielii/b.235.a.M.vannielii.pdf https://staging.crw2.org/data/23S/a/M.vannielii/b.235.a.M.vannielii.bpseq.txt https://staging.crw2.org/data/23S/a/M.vannielii/b.235.a.M.vannielii.ss.txt
b.23.a.S.acidocaldarius 23S b 23 a Archaea   S.acidocaldarius 23S/a/S.acidocaldarius no   https://staging.crw2.org/data/23S/a/S.acidocaldarius/b.23.a.S.acidocaldarius.bpseq.txt  
b.233.a.S.acidocaldarius 23S b 233 a Archaea   S.acidocaldarius 23S/a/S.acidocaldarius no https://staging.crw2.org/data/23S/a/S.acidocaldarius/b.233.a.S.acidocaldarius.pdf https://staging.crw2.org/data/23S/a/S.acidocaldarius/b.233.a.S.acidocaldarius.bpseq.txt https://staging.crw2.org/data/23S/a/S.acidocaldarius/b.233.a.S.acidocaldarius.ss.txt
b.235.a.S.acidocaldarius 23S b 235 a Archaea   S.acidocaldarius 23S/a/S.acidocaldarius no   https://staging.crw2.org/data/23S/a/S.acidocaldarius/b.235.a.S.acidocaldarius.bpseq.txt https://staging.crw2.org/data/23S/a/S.acidocaldarius/b.235.a.S.acidocaldarius.ss.txt
b.23.a.T.acidophilum 23S b 23 a Archaea   T.acidophilum 23S/a/T.acidophilum no   https://staging.crw2.org/data/23S/a/T.acidophilum/b.23.a.T.acidophilum.bpseq.txt  
b.233.a.T.acidophilum 23S b 233 a Archaea   T.acidophilum 23S/a/T.acidophilum no   https://staging.crw2.org/data/23S/a/T.acidophilum/b.233.a.T.acidophilum.bpseq.txt https://staging.crw2.org/data/23S/a/T.acidophilum/b.233.a.T.acidophilum.ss.txt
b.235.a.T.acidophilum 23S b 235 a Archaea   T.acidophilum 23S/a/T.acidophilum no https://staging.crw2.org/data/23S/a/T.acidophilum/b.235.a.T.acidophilum.pdf https://staging.crw2.org/data/23S/a/T.acidophilum/b.235.a.T.acidophilum.bpseq.txt https://staging.crw2.org/data/23S/a/T.acidophilum/b.235.a.T.acidophilum.ss.txt
d.23.a.T.celer 23S d 23 a Archaea   T.celer 23S/a/T.celer no   https://staging.crw2.org/data/23S/a/T.celer/d.23.a.T.celer.bpseq.txt  
d.233.a.T.celer 23S d 233 a Archaea   T.celer 23S/a/T.celer no https://staging.crw2.org/data/23S/a/T.celer/d.233.a.T.celer.pdf https://staging.crw2.org/data/23S/a/T.celer/d.233.a.T.celer.bpseq.txt https://staging.crw2.org/data/23S/a/T.celer/d.233.a.T.celer.ss.txt
d.235.a.T.celer 23S d 235 a Archaea   T.celer 23S/a/T.celer no https://staging.crw2.org/data/23S/a/T.celer/d.235.a.T.celer.pdf https://staging.crw2.org/data/23S/a/T.celer/d.235.a.T.celer.bpseq.txt https://staging.crw2.org/data/23S/a/T.celer/d.235.a.T.celer.ss.txt
b.23.a.T.pendens 23S b 23 a Archaea   T.pendens 23S/a/T.pendens no   https://staging.crw2.org/data/23S/a/T.pendens/b.23.a.T.pendens.bpseq.txt  
b.233.a.T.pendens 23S b 233 a Archaea   T.pendens 23S/a/T.pendens no https://staging.crw2.org/data/23S/a/T.pendens/b.233.a.T.pendens.pdf https://staging.crw2.org/data/23S/a/T.pendens/b.233.a.T.pendens.bpseq.txt https://staging.crw2.org/data/23S/a/T.pendens/b.233.a.T.pendens.ss.txt
b.235.a.T.pendens 23S b 235 a Archaea   T.pendens 23S/a/T.pendens no   https://staging.crw2.org/data/23S/a/T.pendens/b.235.a.T.pendens.bpseq.txt https://staging.crw2.org/data/23S/a/T.pendens/b.235.a.T.pendens.ss.txt
b.23.a.T.tenax 23S b 23 a Archaea   T.tenax 23S/a/T.tenax no   https://staging.crw2.org/data/23S/a/T.tenax/b.23.a.T.tenax.bpseq.txt  
b.233.a.T.tenax 23S b 233 a Archaea   T.tenax 23S/a/T.tenax no https://staging.crw2.org/data/23S/a/T.tenax/b.233.a.T.tenax.pdf https://staging.crw2.org/data/23S/a/T.tenax/b.233.a.T.tenax.bpseq.txt https://staging.crw2.org/data/23S/a/T.tenax/b.233.a.T.tenax.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);