crw2: basepair_frequency: 21 rows where strength = "Weak" and tertiary_type = "3°: pseudoknot" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

21 rows where strength = "Weak" and tertiary_type = "3°: pseudoknot" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	header_format	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	Seq	predominant_types	covarying_types
3830	3830	23S	6.1	66	88	v4	C:G	cWW	3°: pseudoknot	Weak	T	0.1	49.5	1.5	0.5	0.1	0.8	0.1		0.9	0.1	0.3		0.3	0.3	0.3	0.3	44.8	740	CG	GC,CG,UA,AU
3831	3831	23S	6.1	66	88	v4	C:G	cWW	3°: pseudoknot	Weak	3		67.4	1.5			1.5	0.2		0.2	0.2				0.5			28.5	411	CG	CG,UA
3832	3832	23S	6.1	66	88	v4	C:G	cWW	3°: pseudoknot	Weak	B		94.6	1.6			2.3	0.4		0.4					0.8				257	CG,UG	CG,UA
3833	3833	23S	6.1	66	88	v4	C:G	cWW	3°: pseudoknot	Weak	A		94.4	5.6															36	CG,UA	CG,UA
3834	3834	23S	6.1	66	88	v4	C:G	cWW	3°: pseudoknot	Weak	C		92.7	3.1								1.0				2.1		1.0	96	CG,UA,UC	CG,UA
3835	3835	23S	6.1	66	88	v4	C:G	cWW	3°: pseudoknot	Weak	E										0.8							99.1	118
3836	3836	23S	6.1	66	88	v4	C:G	cWW	3°: pseudoknot	Weak	M	0.4		0.9	1.7	0.4				2.6		0.4		0.9			0.9	91.7	233	AG	UA,GU,AG,CC
1422	1422	16S	19.1	571	865	v4	U:A	cWW	3°: pseudoknot	Weak	T		0.3	98.8	0.1	0.1	0.2	0.1										0.1	6825	UA	CG,UA,GU
1423	1423	16S	19.1	571	865	v4	U:A	cWW	3°: pseudoknot	Weak	3			99.7			0.1												5788	UA
1424	1424	16S	19.1	571	865	v4	U:A	cWW	3°: pseudoknot	Weak	B			99.7															4553	UA
1425	1425	16S	19.1	571	865	v4	U:A	cWW	3°: pseudoknot	Weak	A			100.0															220	UA
1426	1426	16S	19.1	571	865	v4	U:A	cWW	3°: pseudoknot	Weak	C			98.8													0.6	0.6	162	UA
1427	1427	16S	19.1	571	865	v4	U:A	cWW	3°: pseudoknot	Weak	E			99.6			0.3				0.1								1015	UA
1428	1428	16S	19.1	571	865	v4	U:A	cWW	3°: pseudoknot	Weak	M		2.3	93.0	0.7	0.6	0.8	0.7			0.1		0.1	0.1		0.1	0.2	1.3	881	CG,UA	CG,UA,AU
8555	8555	23S	85.1	2328	2387	v4	A:U	cWW	3°: pseudoknot	Weak	T			0.1	68.4				0.5									31.0	848	AU	UA,AU
8556	8556	23S	85.1	2328	2387	v4	A:U	cWW	3°: pseudoknot	Weak	3				99.1				0.9										437	AU
8557	8557	23S	85.1	2328	2387	v4	A:U	cWW	3°: pseudoknot	Weak	B				100.0														241	AU
8558	8558	23S	85.1	2328	2387	v4	A:U	cWW	3°: pseudoknot	Weak	A				100.0														41	AU
8559	8559	23S	85.1	2328	2387	v4	A:U	cWW	3°: pseudoknot	Weak	C				100.0														102	AU
8560	8560	23S	85.1	2328	2387	v4	A:U	cWW	3°: pseudoknot	Weak	E				97.4				2.6										155	AU,AC
8561	8561	23S	85.1	2328	2387	v4	A:U	cWW	3°: pseudoknot	Weak	M			0.3	14.6													85.1	309	AU	UA,AU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

21 rows where strength = "Weak" and tertiary_type = "3°: pseudoknot" sorted by position_1

Advanced export