Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

371 rows where molecule = "23S" and tertiary_type = "3°: base pair" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair, CC

group_code 7

  • 3 53
  • A 53
  • B 53
  • C 53
  • E 53
  • M 53
  • T 53

strength 5

conformation 5

tertiary_type 1

  • 3°: base pair · 371 ✖

molecule 1

  • 23S · 371 ✖

header_format 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
3641 3641 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong T 49.1 8.0 2.2 5.0 0.6 0.7 5.9   0.4             0.1 27.8 678 GC,CG,UA,AU,AA GC,CG,AA,UU
3642 3642 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong 3 76.2 13.2 1.7 5.7 0.7 1.2 0.7                   0.4 403 GC,CG,AU GC,CG,UA,AU
3643 3643 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong B 97.6       1.2   1.2                     250 GC GC,AA
3644 3644 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong A 75.0 2.8 13.9 8.3                           36 GC,CG,UA,AU GC,CG,UA,AU
3645 3645 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong C 6.5   6.5       80.4   6.5                 46 GC,UA,AA,AG GC,AA
3646 3646 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong E 30.8 44.4 1.7 17.1   4.3                     1.8 117 GC,CG,AU,UG GC,CG,UA,AU
3647 3647 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong M 10.0 0.4 2.2 4.8 0.4                     0.4 81.6 229 GC,UA,AU GC,CG,UA,AU
3753 3753 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant T   0.4 1.5 2.1     0.8 0.3 66.2         0.1   0.3 28.1 719 AU,AG UA,AG
3754 3754 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant 3   0.5   1.5         97.5         0.2     0.2 405 AG  
3755 3755 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant B                 100.0                 252 AG  
3756 3756 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant A   5.6   11.1         83.3                 36 CG,AU,AG  
3757 3757 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant C             6.2   93.8                 81 AA,AG  
3758 3758 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant E       1.7         96.6         0.9     0.9 117 AG  
3759 3759 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant M   0.4 4.7 3.9     0.4 0.9 2.1             0.9 86.6 233 UA,AU,AG CG,UA,AU
4390 4390 23S 19.2 319 323   v4 G:C cWW   3°: base pair   Strong T 10.1 59.5 0.6 0.4 0.1 2.6 0.1   0.1       0.4 0.2     25.7 892 GC,CG,UG GC,CG,UA,AU
4391 4391 23S 19.2 319 323   v4 G:C cWW   3°: base pair   Strong 3 16.2 77.5 0.7 0.2 0.2 3.2 0.2   0.2       0.6 0.4     0.8 538 GC,CG,UG GC,CG,UA,AU
4392 4392 23S 19.2 319 323   v4 G:C cWW   3°: base pair   Strong B 27.4 68.7     0.4 1.8             1.1 0.7       281 GC,CG GC,CG
4393 4393 23S 19.2 319 323   v4 G:C cWW   3°: base pair   Strong A 19.4 77.8       2.8                       36 GC,CG,UG GC,CG
4394 4394 23S 19.2 319 323   v4 G:C cWW   3°: base pair   Strong C 3.0 94.0       1.0                     2.0 100 GC,CG GC,CG
4395 4395 23S 19.2 319 323   v4 G:C cWW   3°: base pair   Strong E 1.4 88.7 1.8 0.5   5.0 0.5   0.5               1.9 221 CG,UG GC,CG,UA,AU
4396 4396 23S 19.2 319 323   v4 G:C cWW   3°: base pair   Strong M   7.9 0.4 1.2   2.0             0.4       88.2 254 CG,UG CG,UA,AU
4474 4474 23S 21 383 391   v4 C:A cWW   3°: base pair   ??? T   0.1 0.4     0.4 0.1     41.5     0.6       56.8 894 CA UG,CA
4475 4475 23S 21 383 391   v4 C:A cWW   3°: base pair   ??? 3   0.2 0.2     0.7       50.5             48.4 539 CA UG,CA
4476 4476 23S 21 383 391   v4 C:A cWW   3°: base pair   ??? B   0.4       1.4       96.8             1.4 281 CA UG,CA
4477 4477 23S 21 383 391   v4 C:A cWW   3°: base pair   ??? A                                 99.9 37    
4478 4478 23S 21 383 391   v4 C:A cWW   3°: base pair   ??? C     1.0             96.0             3.0 100 CA  
4479 4479 23S 21 383 391   v4 C:A cWW   3°: base pair   ??? E     0.5                           99.6 221    
4480 4480 23S 21 383 391   v4 C:A cWW   3°: base pair   ??? M     0.8       0.4     1.2     2.0       95.8 255 GA  
4586 4586 23S 24.1 531 2018   v4 C:G cWW   3°: base pair   Strong T 2.5 57.3 8.6 3.7 1.0 1.3 20.1   0.4 0.8 0.6 0.1 1.0 0.4   0.1 1.9 775 GC,CG,UA,AU,AA GC,CG,AA,UU
4587 4587 23S 24.1 531 2018   v4 C:G cWW   3°: base pair   Strong 3 4.0 36.4 11.9 5.0 1.9 1.9 34.0   0.5 0.7 1.0   1.4 0.5     0.7 420 GC,CG,UA,AU,AA GC,CG,AA
4588 4588 23S 24.1 531 2018   v4 C:G cWW   3°: base pair   Strong B 1.7 63.9 21.0 8.6   3.0     0.9       0.4       0.4 233 CG,UA,AU,UG GC,CG,UA,AU
4589 4589 23S 24.1 531 2018   v4 C:G cWW   3°: base pair   Strong A 32.4 10.8 2.7 2.7 21.6 2.7 8.1     2.7 10.8     5.4       37 GC,CG,UA,AU,GU,UG,AA,CA,CC,GG GC,CG,AA
4590 4590 23S 24.1 531 2018   v4 C:G cWW   3°: base pair   Strong C   97.0 2.0       1.0                     100 CG,UA CG,UA
4591 4591 23S 24.1 531 2018   v4 C:G cWW   3°: base pair   Strong E 0.7           93.3     1.3     3.3       1.3 150 AA,GA GC,AA
4592 4592 23S 24.1 531 2018   v4 C:G cWW   3°: base pair   Strong M 0.8 76.1 5.9 3.1   0.8 4.7   0.4 1.2 0.4 0.4 0.8 0.4   0.4 4.7 255 CG,UA,AU,AA GC,CG,UA,AU
4621 4621 23S 25 537 556   v4 G:A cWW   3°: base pair   Strong T 3.3 2.6 17.7 3.2 0.2 0.1 8.3 0.3 0.2 0.1   0.1 37.8 0.1   0.5 25.4 883 GC,CG,UA,AU,AA,GA CG,AU,GA
4622 4622 23S 25 537 556   v4 G:A cWW   3°: base pair   Strong 3 5.5 4.4 28.3 4.0 0.2 0.2 8.3   0.4     0.2 44.4 0.2   0.8 3.3 527 GC,CG,UA,AU,AA,GA CG,AU,GA
4623 4623 23S 25 537 556   v4 G:A cWW   3°: base pair   Strong B   1.8         14.5           83.0       0.7 282 AA,GA CG,GA
4624 4624 23S 25 537 556   v4 G:A cWW   3°: base pair   Strong A 29.7 40.5 21.6 5.4   2.7                       37 GC,CG,UA,AU,UG GC,CG,UA,AU
4625 4625 23S 25 537 556   v4 G:A cWW   3°: base pair   Strong C     1.0       7.0 1.0   1.0     90.0         100 AA,GA AC,GA
4626 4626 23S 25 537 556   v4 G:A cWW   3°: base pair   Strong E 8.7 1.4 67.8 9.1 0.5   1.4   1.0     0.5   0.5   1.9 7.3 208 GC,UA,AU GC,CG,UA,AU
4627 4627 23S 25 537 556   v4 G:A cWW   3°: base pair   Strong M     2.3 2.7 0.4   8.6 0.8         3.9       81.3 256 UA,AU,AA,GA GU,AA
4628 4628 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak T 11.9 0.6 0.3 3.7 6.4 3.1 2.7   43.4     0.1 0.1 0.2   1.4 26.1 881 GC,AU,GU,UG,AA,AG GC,AG,UU
4629 4629 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak 3 20.0 1.0   4.0 10.3 5.1 0.6   52.2         0.4   2.3 4.2 525 GC,AU,GU,UG,AG,UU GC,AG,UU
4630 4630 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak B         0.7   1.1   97.5         0.4     0.4 281 AG GU,AG
4631 4631 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak A 70.3     5.4 24.3                         37 GC,AU,GU GC,AU
4632 4632 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak C       1.0     5.0   94.0                 100 AA,AG  
4633 4633 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak E 38.2 2.4   9.2 20.8 13.0               0.5   5.8 10.1 207 GC,CG,AU,GU,UG,UU GC,AU,UG
4634 4634 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak M     1.2 4.3 0.8   6.2   5.5     0.4 0.4       81.3 256 AU,AA,AG GU,AA
4677 4677 23S 25.1 563 578   v4 A:G cWW   3°: base pair   Strong T   24.0 1.5     1.6 17.3   21.8       32.2 0.1     1.4 888 CG,AA,AG,GA CG,GA
4678 4678 23S 25.1 563 578   v4 A:G cWW   3°: base pair   Strong 3   40.5 0.8     2.5 1.7   18.3       35.9 0.2     0.2 526 CG,UG,AG,GA CG,GA
4679 4679 23S 25.1 563 578   v4 A:G cWW   3°: base pair   Strong B             1.1   31.9       66.7 0.4       282 AG,GA AG,GA
4680 4680 23S 25.1 563 578   v4 A:G cWW   3°: base pair   Strong A   43.2       21.6 16.2   16.2       2.7         37 CG,UG,AA,AG,GA CG,AA
4681 4681 23S 25.1 563 578   v4 A:G cWW   3°: base pair   Strong C     4.0       3.0   1.0       92.0         100 UA,AA,GA AG,GA
4682 4682 23S 25.1 563 578   v4 A:G cWW   3°: base pair   Strong E   95.2 1.9     2.4                     0.5 207 CG,UG CG,UA
4683 4683 23S 25.1 563 578   v4 A:G cWW   3°: base pair   Strong M     1.9     0.4 54.2   37.0       1.9       4.6 262 AA,AG UG,AA
4691 4691 23S 25.1 565 576   v4 C:U cWW   3°: base pair   Strong T 27.4 2.1 0.1 0.6 0.6     0.3   0.1   65.8     1.5 0.3 1.2 888 GC,CG,CU GC,UA,CU
4692 4692 23S 25.1 565 576   v4 C:U cWW   3°: base pair   Strong 3 45.8     0.4 0.8     0.6   0.2   50.0     1.9 0.4   526 GC,CU GC,CU
4693 4693 23S 25.1 565 576   v4 C:U cWW   3°: base pair   Strong B       0.7 1.4         0.4   93.3     3.5 0.7   282 CU,UC CU,UC
4694 4694 23S 25.1 565 576   v4 C:U cWW   3°: base pair   Strong A 100.0                                 37 GC  
4695 4695 23S 25.1 565 576   v4 C:U cWW   3°: base pair   Strong C   2.0 1.0 3.0               94.0           100 CG,AU,CU UA,CU
4696 4696 23S 25.1 565 576   v4 C:U cWW   3°: base pair   Strong E 98.6             1.4                   207 GC  
4697 4697 23S 25.1 565 576   v4 C:U cWW   3°: base pair   Strong M 0.8 6.5     0.4             86.6     1.1 0.4 4.2 262 CG,CU CU,UC
4894 4894 23S 31 637 651   v4 A:G cWW   3°: base pair   Strong T 2.9 1.2 0.6 1.9 0.1 0.3 2.7 0.6 38.4         0.3   0.1 50.7 883 GC,AA,AG GC,UA,AG
4895 4895 23S 31 637 651   v4 A:G cWW   3°: base pair   Strong 3 5.0 2.1   0.4     0.2   52.8         0.6     39.0 521 GC,CG,AG GC,AG
4896 4896 23S 31 637 651   v4 A:G cWW   3°: base pair   Strong B       0.7     0.4   97.9         1.1       281 AG  
4897 4897 23S 31 637 651   v4 A:G cWW   3°: base pair   Strong A 70.3 29.7                               37 GC,CG GC,CG
4898 4898 23S 31 637 651   v4 A:G cWW   3°: base pair   Strong C     1.0 12.0   1.0 20.0 5.0 58.0             1.0 2.0 100 AU,AA,AC,AG UA,AG
4899 4899 23S 31 637 651   v4 A:G cWW   3°: base pair   Strong E                                 100.0 203    
4900 4900 23S 31 637 651   v4 A:G cWW   3°: base pair   Strong M     1.5 1.1 0.4 0.8 1.1   2.3               92.8 262 AG UA,GU,AG
4943 4943 23S 32 674 806   v4 G:C cWW   3°: base pair   ??? T 97.9   0.9 0.2 0.1 0.1   0.1     0.1           0.4 843 GC GC,UA,AU
4944 4944 23S 32 674 806   v4 G:C cWW   3°: base pair   ??? 3 99.2       0.2     0.2                 0.4 481 GC  
4945 4945 23S 32 674 806   v4 G:C cWW   3°: base pair   ??? B 98.8             0.4                 0.8 242 GC  
4946 4946 23S 32 674 806   v4 G:C cWW   3°: base pair   ??? A 100.0                                 37 GC  
4947 4947 23S 32 674 806   v4 G:C cWW   3°: base pair   ??? C 100.0                                 100 GC  
4948 4948 23S 32 674 806   v4 G:C cWW   3°: base pair   ??? E 99.5       0.5                         202 GC  
4949 4949 23S 32 674 806   v4 G:C cWW   3°: base pair   ??? M 94.7   3.1 0.8   0.4         0.4           0.8 262 GC,UA GC,UA,AU
5069 5069 23S 33 698 763   v4 C:G cWW   3°: base pair   Strong T 0.5 79.5 13.8 1.4   1.2 0.7   0.1 0.9 0.2 0.3 0.1 0.5 0.2 0.1 0.6 887 CG,UA GC,CG,UA,AU
5070 5070 23S 33 698 763   v4 C:G cWW   3°: base pair   Strong 3 0.8 76.9 17.6 0.4   1.3       1.1 0.4 0.4 0.2 0.8     0.2 524 CG,UA GC,CG,UA,AU
5071 5071 23S 33 698 763   v4 C:G cWW   3°: base pair   Strong B   98.9                       0.7     0.4 282 CG  
5072 5072 23S 33 698 763   v4 C:G cWW   3°: base pair   Strong A   83.8 8.1     8.1                       37 CG,UA,UG CG,UA
5073 5073 23S 33 698 763   v4 C:G cWW   3°: base pair   Strong C   99.0 1.0                             100 CG CG,UA
5074 5074 23S 33 698 763   v4 C:G cWW   3°: base pair   Strong E 2.0 45.4 43.4 1.0   2.0       2.9 1.0 1.0 0.5 1.0       205 GC,CG,UA,UG,CA GC,CG,UA,AU
5075 5075 23S 33 698 763   v4 C:G cWW   3°: base pair   Strong M   77.2 11.0 3.8   1.5 2.3   0.4 0.8   0.4     0.8 0.4 1.5 263 CG,UA,AU,AA CG,UA,AU
5146 5146 23S 34 713 718   v4 G:A cWW   3°: base pair   Strong T 21.1 5.1 1.5 1.0 0.2 0.2 0.5 0.1   0.9     41.4 0.5 0.2   27.3 886 GC,CG,GA CG,AU,GA,UC
5147 5147 23S 34 713 718   v4 G:A cWW   3°: base pair   Strong 3 35.8 8.4 1.0 1.0   0.2   0.2         52.8 0.4 0.2   0.2 523 GC,CG,GA CG,AU,GA,UC
5148 5148 23S 34 713 718   v4 G:A cWW   3°: base pair   Strong B     0.7                   97.9 0.7 0.4   0.4 282 GA GA,UC
5149 5149 23S 34 713 718   v4 G:A cWW   3°: base pair   Strong A 35.1 62.2       2.7                       37 GC,CG,UG GC,CG
5150 5150 23S 34 713 718   v4 G:A cWW   3°: base pair   Strong C     2.0 2.0 2.0   4.0           88.0 1.0 1.0     100 UA,AU,GU,AA,GA AU,GA,UC
5151 5151 23S 34 713 718   v4 G:A cWW   3°: base pair   Strong E 85.3 10.3 1.5 2.5       0.5                   204 GC,CG,AU GC,CG,UA,AU
5152 5152 23S 34 713 718   v4 G:A cWW   3°: base pair   Strong M   0.4 2.3 0.8   0.4       3.0     1.1 0.4     91.7 263 UA,CA AU,UG,CA
5363 5363 23S 38 847 933   v4 U:A cWW   3°: base pair   Strong T 6.9 3.7 15.3 17.5 0.8 1.5 1.2 0.8 0.6 0.9     0.1 2.3 0.2 0.1 47.8 855 GC,CG,UA,AU,GG GC,CG,UA,AU
5364 5364 23S 38 847 933   v4 U:A cWW   3°: base pair   Strong 3 0.4 6.5 25.2 25.8 0.8 2.5 0.4 0.6 0.4 0.2       1.2     36.0 489 CG,UA,AU,UG GC,CG,UA,AU
5365 5365 23S 38 847 933   v4 U:A cWW   3°: base pair   Strong B     49.6 44.2 1.7 2.5 0.4 1.2   0.4               242 UA,AU,UG UA,AU
5366 5366 23S 38 847 933   v4 U:A cWW   3°: base pair   Strong A                                 100.0 36    
5367 5367 23S 38 847 933   v4 U:A cWW   3°: base pair   Strong C 64.0   4.0 6.0 3.0 1.0 1.0 1.0 2.0 5.0       11.0 1.0   1.0 100 GC,UA,AU,GU,AG,CA,GG GC,AU,UG,CA
5368 5368 23S 38 847 933   v4 U:A cWW   3°: base pair   Strong E 0.9 15.2 1.4 9.0   2.8 0.5   0.9         2.8     66.4 211 CG,AU,UG,GG GC,CG,UA,AU
5369 5369 23S 38 847 933   v4 U:A cWW   3°: base pair   Strong M     1.1 7.1 0.4   2.6 0.4 0.4 0.8           0.4 86.9 266 AU,AA UA,AU
5433 5433 23S 38 857 920   v4 G:A cWW   3°: base pair   Strong T 2.9 7.4 2.9 3.4 1.2 3.3 5.6 0.1 17.7   0.1   28.8     0.6 26.0 857 GC,CG,UA,AU,UG,AA,AG,GA AG,CC,GA,UU
5434 5434 23S 38 857 920   v4 G:A cWW   3°: base pair   Strong 3 5.1 12.8 3.9 4.3 1.4 5.5 6.7 0.2 28.7   0.2   29.9     0.6 0.6 491 GC,CG,UA,AU,UG,AA,AG,GA AG,CC,GA,UU

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");