crw2: basepair_frequency: 36 rows where group_code = "B" and tertiary_type = "3°: pseudoknot" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

36 rows where group_code = "B" and tertiary_type = "3°: pseudoknot" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	header_format	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	Seq	predominant_types	covarying_types
206	206	16S	2	17	918	v4	U:A	cWW	3°: pseudoknot	Strong	B			99.1			0.1							0.1			0.2	0.2	2163	UA
213	213	16S	2	18	917	v4	C:G	cWW	3°: pseudoknot	Strong	B		95.2	3.0			0.7			0.2	0.5		0.1					0.1	2163	CG,UA	CG,UA
220	220	16S	2	19	916	v4	A:U	cWW	3°: pseudoknot	Strong	B		79.9	0.3	13.9		0.4			1.7	0.2	0.1	3.2		0.1			0.2	2190	CG,AU,CU	CG,UA,AU
3804	3804	23S	6.1	61	93	v4	C:G	cWW	3°: pseudoknot	Strong	B	32.7	18.5	14.2	25.2		0.4		9.1										254	GC,CG,UA,AU,AC	GC,CG,UA,AU
3811	3811	23S	6.1	62	92	v4		cWW	3°: pseudoknot	Strong	B	8.9	26.8	31.1	1.6	0.4	0.8	6.6		1.9	0.4			1.6			19.5	0.4	257	GC,CG,UA,AA,UU	GC,CG,UA,AU
3818	3818	23S	6.1	64	90	v4	A:U	cWW	3°: pseudoknot	Significant	B	22.6	8.2	0.8	35.4		0.4	32.3							0.4				257	GC,CG,AU,AA	GC,CG,UA,AU
3825	3825	23S	6.1	65	89	v4	U:A	cWW	3°: pseudoknot	Strong	B	15.6	39.7	11.3	24.1	8.2									0.8		0.4		257	GC,CG,UA,AU,GU	GC,CG,UA,AU
3832	3832	23S	6.1	66	88	v4	C:G	cWW	3°: pseudoknot	Weak	B		94.6	1.6			2.3	0.4		0.4					0.8				257	CG,UG	CG,UA
3839	3839	23S	6.2	67	74	v4	U:A	cWH	3°: pseudoknot	Strong	B	2.7	2.7	71.9	10.5	6.6					0.4			0.4		0.4	3.9	0.4	256	GC,CG,UA,AU,GU,UU	GC,CG,UA,AU
4378	4378	23S	19.1	317	334	v4	G:C	cWW	3°: pseudoknot	Strong	B	57.7	0.4		38.8	2.5	0.4					0.4							281	GC,AU,GU	GC,CG,AU
4385	4385	23S	19.1	318	333	v4	C:G	cWW	3°: pseudoknot	Strong	B	3.2	82.1	6.8	1.8		6.1												280	GC,CG,UA,UG	GC,CG,UA,AU
4518	4518	23S	22.1	413	2410	v4	C:G	cWW	3°: pseudoknot	Strong	B		100.0																232	CG
4525	4525	23S	22.1	414	2409	v4	C:G	cWW	3°: pseudoknot	Strong	B		99.6															0.4	232	CG
4532	4532	23S	22.1	415	2408	v4	A:U	cWW	3°: pseudoknot	Strong	B				100.0														232	AU
4539	4539	23S	22.1	416	2407	v4	U:A	cWW	3°: pseudoknot	Strong	B		44.2	55.8															233	CG,UA	CG,UA
1326	1326	16S	18.1	505	526	v4	G:C	cWW	3°: pseudoknot	Strong	B	98.5	0.2	0.1		0.5						0.1			0.1	0.2		0.1	4329	GC	GC,CG,UA
1333	1333	16S	18.1	506	525	v4	G:C	cWW	3°: pseudoknot	Strong	B	99.0			0.3				0.1			0.1						0.3	4377	GC	GC,AU
1340	1340	16S	18.1	507	524	v4	C:G	cWW	3°: pseudoknot	Strong	B		99.1				0.2				0.2	0.2	0.1					0.1	4344	CG
1382	1382	16S	18	521	528	v4	G:C	cWW	3°: pseudoknot	No Support	B	99.4				0.1			0.1						0.1			0.2	4373	GC
1389	1389	16S	18	522	527	v4	C:G	cWW	3°: pseudoknot	Strong	B		99.2		0.4						0.1	0.1	0.1					0.1	4252	CG	CG,AU
1424	1424	16S	19.1	571	865	v4	U:A	cWW	3°: pseudoknot	Weak	B			99.7															4553	UA
5722	5722	23S	41.1	1005	1138	v4	C:G	cWW	3°: pseudoknot	Strong	B		100.0																241	CG
5729	5729	23S	41.1	1006	1137	v4	C:G	cWW	3°: pseudoknot	Strong	B		97.9				2.1												241	CG,UG
6373	6373	23S	50.1	1343	1404	v4	G:C	cWW	3°: pseudoknot	Strong	B	100.0																	265	GC
6380	6380	23S	50.1	1344	1403	v4	U:A	cWW	3°: pseudoknot	Strong	B	1.1	8.7	90.2															264	CG,UA	GC,CG,UA
7339	7339	23S	65.1	1782	2586	v4	U:U	tWW	3°: pseudoknot	Strong	B											63.1					36.9		236	CC,UU	CC,UU
8137	8137	23S	76.1	2112	2169	v4	G:A	No BP	3°: pseudoknot	Strong	B									34.4				65.6					241	AG,GA	AG,GA
8144	8144	23S	76.1	2113	2170	v4	U:A	No BP	3°: pseudoknot	Strong	B		41.9	53.9							1.7			2.5					241	CG,UA,GA	CG,UA
8151	8151	23S	76.1	2117	2172	v4	A:U	No BP	3°: pseudoknot	Strong	B				100.0														241	AU
8417	8417	23S	81.2	2283	2325	v4	C:G	cWW	3°: pseudoknot	???	B		75.2	10.7			13.6											0.4	242	CG,UA,UG	CG,UA
8550	8550	23S	85.1	2326	2389	v4	C:G	cWW	3°: pseudoknot	Strong	B		46.5				53.5												241	CG,UG
8557	8557	23S	85.1	2328	2387	v4	A:U	cWW	3°: pseudoknot	Weak	B				100.0														241	AU
8564	8564	23S	85.1	2329	2386	v4	U:A	cWW	3°: pseudoknot	Strong	B	13.3		34.4	52.3														241	GC,UA,AU	GC,UA,AU
8571	8571	23S	85.1	2330	2385	v4	G:C	cWW	3°: pseudoknot	Strong	B	88.8		10.4	0.4													0.4	241	GC,UA	GC,UA,AU
8641	8641	23S	86.1	2359	2428	v4	C:G	cWW	3°: pseudoknot	Strong	B		99.6	0.4															242	CG	CG,UA
9040	9040	23S	93.1	2626	2777	v4	C:G	cWW	3°: pseudoknot	Strong	B		89.2	8.9			0.9											0.9	213	CG,UA	CG,UA

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JSON shape: default, array, newline-delimited

CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

36 rows where group_code = "B" and tertiary_type = "3°: pseudoknot" sorted by position_1

Advanced export