Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

42 rows where group_code = "B" and molecule = "5S" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, GC, CG, UA, AU, GU, UG, AA, AC, AG, CA, CC, CU, GA, GG, UC, UU, gap, Seq, covarying_types

strength 2

header_format 2

tertiary_type 1

molecule 1

group_code 1

conformation 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
2 2 5S 1 1 119   v4 U:A cWW       Strong B 18.8   35.4 9.7 0.7 5.6 1.4 2.1 1.4 1.4 0.7 0.7     1.4 11.8 9.0 144 GC,UA,AU,UG,AC,UU GC,UA,AU
6 6 5S 1 2 118   v4 G:C cWW       Strong B 54.8 2.7 10.5 10.0 1.4 4.1 1.4 5.5     0.5 0.5 0.9   1.8 1.8 4.1 219 GC,CG,UA,AU,UG,AC GC,CG,UA,AU
10 10 5S 1 3 117   v4 C:G cWW       Strong B 2.1 50.9 18.6 1.1   20.7   0.4     0.4 0.7 0.4 0.7 1.4 1.4 1.4 285 GC,CG,UA,UG GC,CG,UA,AU
14 14 5S 1 4 116   v4 C:G cWW       Strong B 2.3 60.9 14.7 1.7 1.0 15.7       0.3 0.7 0.3 0.7   0.3 0.3 1.0 299 GC,CG,UA,UG GC,CG,UA,AU
18 18 5S 1 5 115   v4 U:A cWW       Strong B 3.3 18.4 70.6 0.3   3.0 0.3   2.3 0.3             1.3 299 GC,CG,UA,UG,AG GC,CG,UA,AU
22 22 5S 1 6 114   v4 G:C cWW       Strong B 89.7 1.3 0.3 4.7 1.7 1.0         0.3 0.3         0.7 300 GC,AU GC,CG,UA,AU
26 26 5S 1 7 113   v4 G:C cWW       Strong B 89.4   0.3 7.6 1.3     0.3             0.3   0.7 301 GC,AU GC,UA,AU
30 30 5S 1 8 112   v4 C:G cWW       Strong B 2.0 39.5 1.3 1.3   55.1               0.3     0.3 301 CG,UG GC,AU,UG
34 34 5S 1 9 111   v4 G:U cWW       Strong B 63.6 0.7 0.7 3.6 28.8 0.7                     2.0 302 GC,AU,GU GC,CG,UA,AU
38 38 5S 1 10 110   v4 G:C cWW       Strong B 39.4 4.3 6.6 43.7 2.6 0.7 1.3 0.7 0.3               0.3 302 GC,CG,UA,AU,GU GC,CG,UA,AU
42 42 5S 2 16 68   v4 G:C cWW       Strong B 86.4 3.3 5.3 1.0 1.7 1.3   0.3     0.3   0.3         302 GC,CG,UA GC,CG,UA,AU
46 46 5S 2 17 67   v4 C:G cWW       Strong B 2.0 75.5 3.0 5.3   5.6 0.3     6.6             1.7 302 CG,UA,AU,UG,CA GC,CG,UA,AU
50 50 5S 2 18 65   v4 G:U cWW       Strong B 54.6 2.0 4.0 16.9 20.2   0.3 1.0     0.3 0.3 0.3         302 GC,UA,AU,GU GC,CG,UA,AU
54 54 5S 2 19 64   v4 C:G cWW       Strong B 22.8 14.9 26.2 31.1 2.0 0.7 0.3 0.3   0.3     0.3 0.3 0.3 0.3   302 GC,CG,UA,AU GC,CG,UA,AU
58 58 5S 2 20 63   v4 G:C cWW       Strong B 30.1 8.9 23.8 29.8 3.3 0.7                 0.7 2.6   302 GC,CG,UA,AU,GU,UU GC,CG,UA,AU
62 62 5S 2 21 62   v4 G:C cWW       Strong B 57.6 4.3 14.6 15.9 3.6 1.7   0.3 0.3       0.3     1.3   302 GC,CG,UA,AU,GU GC,CG,UA,AU
66 66 5S 2 22 61   v4 U:G cWW       Strong B 29.1 5.3 11.6 22.5 1.0 29.8                   0.7   302 GC,CG,UA,AU,UG GC,AU,UG
70 70 5S 2 23 60   v4 G:C cWW       Strong B 82.1 1.7   3.0 0.3 0.3   0.3         4.3 1.0 4.7 2.0 0.3 301 GC,AU,GA,UC GC,CG,AU
74 74 5S 2 28 56   v4 C:G cWW       Strong B   46.0   4.3 0.3           1.0 46.0     1.3 1.0   302 CG,AU,CU CG,AU,UC
78 78 5S 2 29 55   v4 A:U cWW       Strong B 9.6   0.3 89.7 0.3                         302 GC,AU GC,UA,AU
82 82 5S 2 30 54   v4 C:G cWW       Strong B   99.3       0.3         0.3             302 CG  
86 86 5S 2 31 51   v4 C:G cWW       Strong B   88.1 5.0     0.7 1.0     3.6     0.3   1.3     302 CG,UA,CA CG,UA
90 90 5S 2 32 50   v4 U:A cWW       Strong B 0.3 57.6 40.1     1.3       0.3 0.3             302 CG,UA GC,CG,UA
94 94 5S 2 33 49   v4 G:C cWW       Strong B 81.1 10.6 0.7 6.6 0.3 0.3               0.3       302 GC,CG,AU GC,CG,UA,AU
98 98 5S 2 34 48   v4 A:U cWW       Strong B 13.2   32.8 53.6 0.3                         302 GC,UA,AU GC,UA,AU
102 102 5S 3 70 106   v4 C:G cWW       Strong B 9.6 84.1 3.3 1.3   0.3     0.3 0.3         0.3   0.3 302 GC,CG,UA GC,CG,UA,AU
106 106 5S 3 71 105   v4 C:G cWW       Strong B   85.8 3.0 1.0   9.3       0.3           0.3 0.3 302 CG,UA,UG CG,UA,AU
110 110 5S 3 72 104   v4 G:A cWW       Strong B 0.3   1.0 1.3 0.3   15.3 0.7   0.7 1.3   76.7   1.0   1.3 301 AA,GA AU,CC,GA
114 114 5S 3 73 103   v4 A:U cWW       Strong B 0.3   1.3 95.7 0.3 1.0 0.3 0.3         0.3       0.3 302 AU GC,UA,AU
118 118 5S 3 74 102   v4 U:G cWW       Strong B   0.3 0.7 1.0   80.5 7.3 1.3 0.7 6.3     0.3 0.7 0.7   0.3 302 UG,AA,CA UG,AA
122 122 5S 3 75 101 Tertiary legacy     B 3°: base pair   Strong B     2.6 0.3     3.0 0.3 5.0   0.3   88.1 0.3       302 UA,AA,AG,GA AG,CC,GA
126 126 5S 3 76 100 Tertiary legacy     B 3°: base pair   Strong B         0.3   29.8 0.3 0.7 0.3     1.0 67.5       302 AA,GG AA,GG
130 130 5S 3 77 99 Tertiary legacy     B 3°: base pair   Strong B     98.7     0.3 0.3                   0.7 302 UA  
134 134 5S 3 78 98 Tertiary legacy     B 3°: base pair   Significant B     0.3 1.3     10.6 0.7 85.8       0.3 0.7     0.3 302 AA,AG AG,GA
138 138 5S 3 79 97   v4 G:C cWW       Strong B 15.9 48.2 1.3 1.0 33.2                     0.3   301 GC,CG,GU CG,UA,GU
142 142 5S 3 80 96   v4 U:G cWW       Significant B 0.3 3.6 0.3     94.7               0.7   0.3   302 CG,UG GC,UG
146 146 5S 3 81 95   v4 G:U cWW       Strong B 10.0 1.0 2.0 9.0 51.2 0.3     0.7   2.0 1.3     8.6 13.0 1.0 301 GC,AU,GU,UC,UU CG,GU,UC
150 150 5S 3 82 94   v4 U:A cWW       Strong B 19.0 35.3 32.7 4.0 0.7 2.7     0.3   0.3 0.3 0.3   2.7 0.3 1.3 300 GC,CG,UA,AU,UG,UC GC,CG,UA,AU
154 154 5S 3 83 93   v4 G:C cWW       Strong B 64.2 4.3 1.7 18.5 2.3 0.3     0.3 1.7     1.0   0.3 0.7 4.6 302 GC,CG,AU,GU GC,CG,UA,AU
158 158 5S 3 84 92   v4 G:C cWW       Strong B 43.0 14.2 10.3 10.3 1.3 7.3 0.7 0.3   0.3     0.3   0.3 1.0 10.6 302 GC,CG,UA,AU,UG GC,CG,UA,AU
162 162 5S 3 85 91   v4 G:C cWW       Strong B 42.7 27.5 0.3 1.7 3.6 3.3   2.6   0.3         1.3 0.3 16.2 302 GC,CG,GU,UG,AC GC,CG,UA,AU
166 166 5S 3 86 90   v4 G:C cWW       Strong B 44.0 7.3   0.7 2.0 1.3           0.3     0.3 0.7 43.4 302 GC,CG GC,CG,AU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");