crw2: basepair_frequency: 35 rows where conformation = "tHS" and molecule = "23S" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

35 rows where conformation = "tHS" and molecule = "23S" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	header_format	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	Seq	predominant_types	covarying_types
3753	3753	23S	5	53	117	v4	A:G	tHS	3°: base pair	Significant	T		0.4	1.5	2.1			0.8	0.3	66.2					0.1		0.3	28.1	719	AU,AG	UA,AG
3754	3754	23S	5	53	117	v4	A:G	tHS	3°: base pair	Significant	3		0.5		1.5					97.5					0.2			0.2	405	AG
3755	3755	23S	5	53	117	v4	A:G	tHS	3°: base pair	Significant	B									100.0									252	AG
3756	3756	23S	5	53	117	v4	A:G	tHS	3°: base pair	Significant	A		5.6		11.1					83.3									36	CG,AU,AG
3757	3757	23S	5	53	117	v4	A:G	tHS	3°: base pair	Significant	C							6.2		93.8									81	AA,AG
3758	3758	23S	5	53	117	v4	A:G	tHS	3°: base pair	Significant	E				1.7					96.6					0.9			0.9	117	AG
3759	3759	23S	5	53	117	v4	A:G	tHS	3°: base pair	Significant	M		0.4	4.7	3.9			0.4	0.9	2.1							0.9	86.6	233	UA,AU,AG	CG,UA,AU
6917	6917	23S	59	1528	1543	v4	A:G	tHS	3°: base pair	Strong	T	5.7	7.2	4.7	11.2	0.6	1.0	0.9	0.2	21.4	0.2	0.1	0.1				1.5	44.9	859	GC,CG,UA,AU,AG	GC,UA,AG,CU
6918	6918	23S	59	1528	1543	v4	A:G	tHS	3°: base pair	Strong	3	10.1	12.2	7.5	19.3	1.0	1.0	0.6	0.4	36.2								11.5	483	GC,CG,UA,AU,AG	GC,UA,AG
6919	6919	23S	59	1528	1543	v4	A:G	tHS	3°: base pair	Strong	B	5.3	0.4	12.1		1.1	1.5	1.1	0.8	65.5								12.1	264	GC,UA,AG	GC,UA,AG
6920	6920	23S	59	1528	1543	v4	A:G	tHS	3°: base pair	Strong	A	10.3	61.5			2.6												25.6	39	GC,CG,GU	GC,CG
6921	6921	23S	59	1528	1543	v4	A:G	tHS	3°: base pair	Strong	C		3.0	4.0	3.0		4.0	5.0		9.0	2.0		1.0				13.0	56.0	100	CG,UA,AU,UG,AA,AG,CA,UU	AG,CA,UU
6922	6922	23S	59	1528	1543	v4	A:G	tHS	3°: base pair	Strong	E	17.2	18.9	2.2	51.7	0.6	0.6			1.1								7.8	180	GC,CG,UA,AU	GC,CG,UA,AU
6923	6923	23S	59	1528	1543	v4	A:G	tHS	3°: base pair	Strong	M											0.4						99.7	276
7141	7141	23S	62	1690	1697	v4	A:G	tHS	3°: base pair	Strong	T				0.4	0.4		10.8		53.5	2.9		0.4	0.1			3.9	27.7	836	AA,AG,CA,UU	AG,CA,UU
7142	7142	23S	62	1690	1697	v4	A:G	tHS	3°: base pair	Strong	3					0.7		7.9		80.1	3.1		0.7	0.2			7.2	0.2	458	AA,AG,CA,UU	AG,CA,UU
7143	7143	23S	62	1690	1697	v4	A:G	tHS	3°: base pair	Strong	B							11.1		74.8	2.3						11.5	0.4	262	AA,AG,CA,UU	AG,CA,UU
7144	7144	23S	62	1690	1697	v4	A:G	tHS	3°: base pair	Strong	A					4.9				63.4	17.1		4.9	2.4			7.3		41	GU,AG,CA,CU,GA,UU	AG,CA,UU
7145	7145	23S	62	1690	1697	v4	A:G	tHS	3°: base pair	Strong	C				1.0			46.5		50.5	1.0							1.0	101	AA,AG	AG,CA
7146	7146	23S	62	1690	1697	v4	A:G	tHS	3°: base pair	Strong	E					0.6		4.5		93.5	0.6		0.6						155	AA,AG	GU,AG,CA
7147	7147	23S	62	1690	1697	v4	A:G	tHS	3°: base pair	Strong	M				0.7			2.5		10.5	3.2							83.0	277	AA,AG,CA	AG,CA
7316	7316	23S	65	1775	1789	v4	U:A	tHS		Weak	T		1.0	97.3	0.4			0.1								0.5	0.8		842	UA	CG,UA,AU
7317	7317	23S	65	1775	1789	v4	U:A	tHS		Weak	3			98.9				0.2								0.9			458	UA
7318	7318	23S	65	1775	1789	v4	U:A	tHS		Weak	B			99.6				0.4											261	UA
7319	7319	23S	65	1775	1789	v4	U:A	tHS		Weak	A			100.0															41	UA
7320	7320	23S	65	1775	1789	v4	U:A	tHS		Weak	C			100.0															101	UA
7321	7321	23S	65	1775	1789	v4	U:A	tHS		Weak	E			97.4												2.6			156	UA,UC
7322	7322	23S	65	1775	1789	v4	U:A	tHS		Weak	M		2.8	93.6	1.1												2.5		283	CG,UA,UU	CG,UA,AU
7407	7407	23S	66	1803	1814	v4	A:G	tHS	3°: base pair	Weak	T	0.5	0.4	0.6	1.5	20.2	0.1	7.6	2.6	37.5	0.2	0.1	0.1				0.2	28.2	840	GU,AA,AC,AG	UA,GU,AG,CC
7408	7408	23S	66	1803	1814	v4	A:G	tHS	3°: base pair	Weak	3	0.9	0.7	0.2	0.9	37.3		0.2	2.0	55.9		0.2					0.4	1.3	456	GU,AC,AG	UA,GU,AG,CC
7409	7409	23S	66	1803	1814	v4	A:G	tHS	3°: base pair	Weak	B				0.4			0.4	0.4	98.5								0.4	259	AG
7410	7410	23S	66	1803	1814	v4	A:G	tHS	3°: base pair	Weak	A					75.6			17.1			2.4					4.9		41	GU,AC,CC,UU	GU,AC
7411	7411	23S	66	1803	1814	v4	A:G	tHS	3°: base pair	Weak	C				4.0			53.5	11.9	29.7								1.0	101	AU,AA,AC,AG
7412	7412	23S	66	1803	1814	v4	A:G	tHS	3°: base pair	Weak	E	2.6	1.9	0.6	1.9	89.1			0.6									3.2	156	GC,GU	CG,UA,GU,AC
7413	7413	23S	66	1803	1814	v4	A:G	tHS	3°: base pair	Weak	M			1.4	1.8		0.4	3.2	0.4	10.6	0.7		0.4					81.3	283	AA,AG	UA,AG,CU

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JSON shape: default, array, newline-delimited

CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

35 rows where conformation = "tHS" and molecule = "23S" sorted by position_1

Advanced export