Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

18 rows where strength = "Significant" and tertiary_type = "3°: base pair" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: helix_number, position_1, position_2, reference_base_pair, CG, UA, AU, GU, AC, AG, gap, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel

group_code 7

molecule 2

conformation 2

tertiary_type 1

  • 3°: base pair · 18 ✖

strength 1

  • Significant · 18 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 5 53 117 A:G tHS 3°: base pair Significant T   0.4 1.5 2.1     0.8 0.3 66.2         0.1   0.3 28.1 719 AU,AG UA,AG 12 11 6 0.52 0.28 0.94 1.22 0.06 0.06 0.42 0.29 0.01 0.49
23S 5 53 117 A:G tHS 3°: base pair Significant 3   0.5   1.5         97.5         0.2     0.2 405 AG   2 2 0 0.0 0.0 0.0 0.0 0.02 0.02 1.9 1.86 0.0 0.64
23S 5 53 117 A:G tHS 3°: base pair Significant B                 100.0                 252 AG   0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.77
23S 5 53 117 A:G tHS 3°: base pair Significant A   5.6   11.1         83.3                 36 CG,AU,AG   1 1 0 0.0 0.0 0.0 0.0 0.17 0.17 1.69 1.5 0.0 0.88
23S 5 53 117 A:G tHS 3°: base pair Significant C             6.2   93.8                 81 AA,AG   0 2 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.71 0.0 0.79
23S 5 53 117 A:G tHS 3°: base pair Significant E       1.7         96.6         0.9     0.9 117 AG   1 1 0 0.0 0.0 0.0 0.0 0.02 0.02 1.84 1.79 0.0 0.44
23S 5 53 117 A:G tHS 3°: base pair Significant M   0.4 4.7 3.9     0.4 0.9 2.1             0.9 86.6 233 UA,AU,AG CG,UA,AU 10 7 6 0.71 0.5 0.68 1.18 0.68 0.68 -0.51 -0.56 0.02 0.1
5S 3 78 98     3°: base pair Significant 3     0.3 0.5     5.2 0.3 92.3 0.7     0.2 0.3     0.2 611 AA,AG AG,CA                          
5S 3 78 98     3°: base pair Significant B     0.3 1.3     10.6 0.7 85.8       0.3 0.7     0.3 302 AA,AG AG,GA                          
5S 3 78 98     3°: base pair Significant A     2.3       2.3   86.4 9.1               44 UA,AA,AG,CA AG,CA                          
5S 3 78 98     3°: base pair Significant E                 100.0                 298 AG                            
23S 51 1348 1598 C:A cWW 3°: base pair Significant T 29.1   7.8 1.3 0.6 0.5 1.5 0.8 0.1 15.5 0.6 0.2 0.1     0.1 41.5 844 GC,UA,CA GC,AU,UG,CA 26 35 4 0.13 0.59 0.8 1.39 0.66 0.67 -0.81 -0.5 0.2 0.47
23S 51 1348 1598 C:A cWW 3°: base pair Significant 3 32.1   4.3 0.4 0.6 0.4 0.9     19.7             41.6 468 GC,UA,CA GC,AU,UG,CA 8 22 2 0.13 0.78 0.9 1.68 0.63 0.65 -0.67 0.12 0.33 0.43
23S 51 1348 1598 C:A cWW 3°: base pair Significant B 57.0   5.3 0.8 1.1 0.8       35.0               263 GC,UA,CA GC,AU,UG,CA 7 5 2 0.33 0.85 0.94 1.78 0.63 0.65 0.71 0.81 0.0 0.81
23S 51 1348 1598 C:A cWW 3°: base pair Significant A                                 99.9 41     0 6 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.2 1.0 0.0
23S 51 1348 1598 C:A cWW 3°: base pair Significant C 96.0     2.0 2.0                         100 GC,AU,GU GC,AU 2 3 2 0.8 0.5 0.98 1.48 0.98 1.0 1.86 1.76 0.0 0.97
23S 51 1348 1598 C:A cWW 3°: base pair Significant E     3.7       2.4                   93.9 164 UA,AA   1 11 0 0.0 0.0 0.0 0.0 0.6 0.6 -0.3 0.74 0.63 0.04
23S 51 1348 1598 C:A cWW 3°: base pair Significant M     16.7 2.5   0.7 3.3 2.5 0.4 14.1 1.8 0.7 0.4     0.4 56.6 276 UA,AU,AA,AC,CA UA,AC,CU 16 10 0 0.0 0.12 0.0 0.12 0.44 0.46 -0.83 -0.56 0.01 0.39

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;