Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

3 rows where group_code = "M" and tertiary_type = "3°: base triple" sorted by position_1

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Suggested facets: covarying_types, PNuc

tertiary_type 1

  • 3°: base triple · 3 ✖

strength 1

molecule 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 35 740 757 C:G cWW 3°: base triple Strong M 0.8 6.5 5.7 21.7 52.1   0.4 1.5     1.1         9.5 0.8 263 CG,UA,AU,GU,UU CG,UA,GU,AC 31 15 11 0.48 0.29 0.66 0.95 0.35 0.87 0.28 1.08 0.0 0.84
23S 71 1950 1956 G:U cWW 3°: base triple Strong M   0.6 30.5 0.6 6.8 22.8 3.5 7.4 2.3 24.1           1.3   311 UA,GU,UG,AA,AC,AG,CA CG,UA,GU,AC 22 21 9 0.42 0.21 0.45 0.67 0.32 0.61 0.37 0.46 0.0 1.0
23S 73 2057 2611 G:C cWW 3°: base triple Strong M 11.8     84.7 3.1               0.4         262 GC,AU,GU GC,AU 3 4 3 0.86 0.78 0.97 1.74 0.97 1.0 1.4 1.44 0.0 0.84

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;