Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

6 rows where conformation = "tWW" and group_code = "T" sorted by position_1

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Suggested facets: reference_base_pair, GU, UG, AG, CA, CU, GA, UU, predominant_types, covarying_types, Cov1, Cov3, WC, WCGU, DfDel, PNuc

tertiary_type 2

molecule 2

strength 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 12.1 234 430 U:A tWW   Strong T   3.8 69.1 0.1   0.8 0.7 0.1 0.1 0.2     0.1     0.2 24.7 866 CG,UA CG,UA,AU 10 12 6 0.55 0.63 0.97 1.6 0.97 0.98 0.39 0.44 0.01 0.62
16S 23.1 722 733 G:G tWW 3°: base pair Strong T 0.2 0.7 3.0 1.6 0.9 0.7 29.5 0.3 5.1 0.4 0.1 0.1 1.3 55.1 0.1 0.2 0.7 7189 UA,AA,AG,GG AA,CC,GG,UU 166 127 52 0.35 0.68 0.85 1.53 0.06 0.07 0.69 0.8 0.0 0.84
23S 43.1 1082 1086 U:A tWW 3°: base pair Strong T 0.1 26.9 45.2 1.0 0.1 0.1 0.1     0.1     0.1 0.1 0.3 0.8 24.8 870 CG,UA GC,CG,UA,AU 22 13 8 0.46 0.94 0.97 1.91 0.97 0.98 0.4 -0.04 0.12 0.62
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong T   0.1 2.1             0.1 60.3         36.9 0.5 770 UA,CC,UU CC,UU 13 19 12 0.75 0.94 0.98 1.92 0.02 0.02 1.02 0.86 0.0 0.73
23S 66 1800 1817 C:G tWW 3°: base pair Strong T   64.6 1.1 16.5 0.1 0.1 0.4 0.2 0.1 8.2 0.4 0.2         7.9 842 CG,AU,CA CG,UA,AU 6 23 4 0.28 0.64 0.89 1.54 0.89 0.9 0.7 0.38 0.0 0.74
23S 69.1 1925 1929 C:G tWW 3°: base pair Strong T   74.5 1.2 0.5   23.3           0.1       0.2 0.1 848 CG,UG CG,UA,AU 7 7 3 0.43 0.07 0.0 0.07 0.76 1.0 1.14 1.83 0.0 0.81

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;