Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

6 rows where conformation = "tWW" and group_code = "A" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair, sequences, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, PNuc

tertiary_type 2

molecule 2

strength 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 12.1 234 430 U:A tWW   Strong A   2.8 91.7           2.8 2.8               36 CG,UA,AG,CA CG,UA 1 0 0 0.0 0.33 0.94 1.28 0.94 0.94 1.51 1.7 0.0 0.88
16S 23.1 722 733 G:G tWW 3°: base pair Strong A         0.8   20.3   0.4         78.4       241 AA,GG AA,GG 4 6 4 0.8 0.94 0.99 1.93 0.0 0.01 1.26 1.21 0.0 0.91
23S 43.1 1082 1086 U:A tWW 3°: base pair Strong A   59.5 40.5                             37 CG,UA CG,UA 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 1.03 1.03 0.0 0.9
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong A                     17.1         82.9   41 CC,UU CC,UU 3 3 3 1.0 1.0 1.0 2.0 0.0 0.0 1.34 1.34 0.0 1.0
23S 66 1800 1817 C:G tWW 3°: base pair Strong A   100.0                               41 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 69.1 1925 1929 C:G tWW 3°: base pair Strong A           100.0                       41 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;