Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "tHS/tSH" and molecule = "23S" sorted by position_1

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Suggested facets: CG, gap, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, PNuc

group_code 7

tertiary_type 1

strength 1

molecule 1

conformation 1

  • tHS/tSH · 7 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 68 1858 1884 A:G tHS/tSH 3°: base pair Strong T 0.2 0.3 0.9 1.3 0.2   3.2   19.9 0.5     20.3       53.1 868 AA,AG,GA AG,GA 12 24 7 0.39 0.75 0.86 1.61 0.06 0.06 -0.63 -0.62 0.0 0.39
23S 68 1858 1884 A:G tHS/tSH 3°: base pair Strong 3   0.4         0.7   20.4       35.3       43.2 456 AG,GA AG,GA 4 5 3 0.67 0.95 0.98 1.93 0.01 0.01 -0.42 -0.39 0.0 0.41
23S 68 1858 1884 A:G tHS/tSH 3°: base pair Strong B   0.8         1.2   35.8       61.9       0.4 260 AG,GA AG,GA 4 5 3 0.67 0.95 0.98 1.93 0.01 0.01 0.95 1.05 0.0 0.79
23S 68 1858 1884 A:G tHS/tSH 3°: base pair Strong A                                 100.0 41     0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
23S 68 1858 1884 A:G tHS/tSH 3°: base pair Strong C       3.0     21.8   75.2                 101 AU,AA,AG   0 13 0 0.0 0.0 0.0 0.0 0.03 0.03 2.0 1.06 0.0 0.98
23S 68 1858 1884 A:G tHS/tSH 3°: base pair Strong E                                 100.0 155     0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
23S 68 1858 1884 A:G tHS/tSH 3°: base pair Strong M 0.6 0.3 2.6 2.6 0.6   1.0   1.3 1.3     4.8       84.9 311 UA,AU,GA CG,AU,GA 8 6 4 0.57 0.28 0.51 0.79 0.4 0.45 -0.59 -0.53 0.0 0.15

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;