Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

21 rows where conformation = "No BP" and tertiary_type = "3°: pseudoknot" sorted by position_1

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Suggested facets: position_1, position_2, reference_base_pair, CA, GA, gap, sequences, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

group_code 7

tertiary_type 1

  • 3°: pseudoknot · 21 ✖

strength 1

molecule 1

conformation 1

  • No BP · 21 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong T 0.1 0.2 0.9 1.1 0.5   1.3   11.0 0.1     53.0   0.1   31.6 847 AG,GA AG,GA,UC 14 10 9 0.75 0.72 0.94 1.66 0.04 0.04 -0.13 -0.1 0.0 0.55
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong 3 0.2     2.1 0.9       20.1       76.7         437 AU,AG,GA AG,GA 8 8 7 0.88 0.86 0.97 1.83 0.02 0.03 1.24 1.07 0.0 0.69
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong B                 34.4       65.6         241 AG,GA AG,GA 2 2 2 1.0 1.0 1.0 2.0 0.0 0.0 1.07 1.07 0.0 0.74
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong A       4.9         12.2       82.9         41 AU,AG,GA AG,GA 3 3 3 1.0 0.71 0.95 1.67 0.05 0.05 1.34 1.19 0.0 1.0
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong C             3.0           97.0         101 AA,GA   1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.81 2.0 0.0 0.98
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong E 0.6     4.5 2.6               92.3         155 AU,GU,GA AU,GA 3 3 2 0.67 0.58 0.97 1.55 0.05 0.08 1.74 1.57 0.0 0.59
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong M   0.6 2.6       2.6   1.6 0.3     5.2   0.3   86.7 309 UA,AA,GA AG,GA,UC 5 2 2 0.57 0.24 0.54 0.78 0.24 0.24 -0.54 -0.42 0.0 0.13
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong T   26.0 37.7     1.1 0.1     1.8     1.3     0.1 32.0 847 CG,UA CG,UA 15 14 8 0.55 0.86 0.94 1.79 0.94 0.95 -0.3 -0.21 0.0 0.55
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong 3   27.5 66.8     0.9       2.5     2.1     0.2   437 CG,UA,CA,GA CG,UA 11 10 7 0.67 0.83 0.94 1.77 0.94 0.95 0.98 1.11 0.0 0.69
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong B   41.9 53.9             1.7     2.5         241 CG,UA,GA CG,UA 7 5 5 0.83 0.91 0.96 1.87 0.96 0.96 0.86 1.02 0.0 0.74
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong A   29.3 48.8             17.1     4.9         41 CG,UA,CA,GA CG,UA 2 1 0 0.0 0.57 0.78 1.35 0.78 0.78 0.77 1.13 0.0 1.0
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong C   96.0 3.0             1.0               101 CG,UA CG,UA 1 2 1 0.67 0.75 0.99 1.74 0.99 0.99 1.81 1.76 0.0 0.98
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong E   4.5 91.6     2.6             0.6     0.6   155 CG,UA,UG CG,UA 2 4 2 0.67 0.54 0.96 1.5 0.96 0.99 1.68 1.57 0.0 0.59
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong M   1.0 7.8     1.6 0.3     1.0     0.6       87.7 309 UA CG,UA 3 2 0 0.0 0.21 0.71 0.93 0.71 0.84 -0.42 -0.42 0.01 0.12
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong T 5.4 7.7 0.6 49.2 0.4   0.7   0.5 0.4   0.2 0.8     2.5 31.6 847 GC,CG,AU,UU GC,CG,UA,AU 14 15 9 0.62 0.72 0.92 1.64 0.92 0.93 -0.37 -0.3 0.0 0.55
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong 3 8.9     88.8 0.2         0.7   0.5 0.9         437 GC,AU GC,AU,CA 5 4 2 0.44 0.86 0.98 1.84 0.98 0.98 1.44 1.45 0.0 0.69
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong B       100.0                           241 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong A 85.4     14.6                           41 GC,AU GC,AU 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.4 1.4 0.0 1.0
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong C 2.0 64.4   11.9 1.0                     20.8   101 GC,CG,AU,UU GC,CG,UU 5 4 4 0.89 0.64 0.87 1.51 0.78 0.79 0.6 0.95 0.0 0.98
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong E 2.6     91.0 0.6         1.9   1.3 2.6         155 GC,AU,GA GC,AU,CA 4 3 1 0.29 0.29 0.94 1.22 0.94 0.94 1.48 1.56 0.0 0.59
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong M 1.6   1.6 5.5 0.3   1.9   1.3       1.0       86.7 309 AU GC,UA,AU 4 7 3 0.55 0.42 0.66 1.07 0.66 0.68 -0.47 -0.54 0.0 0.13

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;