Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

14 rows where conformation = "No BP" and strength = "No Support" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, UA, AC, gap, predominant_types, Xch, Ych, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

group_code 7

molecule 2

strength 1

  • No Support · 14 ✖

conformation 1

  • No BP · 14 ✖

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 30 944 1237 G:C No BP   No Support T 99.3       0.2     0.1                 0.3 6633 GC   3 4 0 0.0 0.04 0.0 0.04 1.0 1.0 1.95 1.97 0.0 0.78
16S 30 944 1237 G:C No BP   No Support 3 99.6             0.1                 0.2 5326 GC   2 1 0 0.0 0.11 0.0 0.11 1.0 1.0 1.96 1.99 0.0 0.74
16S 30 944 1237 G:C No BP   No Support B 99.7                               0.1 4162 GC   2 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.99 0.0 0.71
16S 30 944 1237 G:C No BP   No Support A 99.5             0.5                   191 GC   0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 2.0 0.0 0.72
16S 30 944 1237 G:C No BP   No Support C 100.0                                 160 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88
16S 30 944 1237 G:C No BP   No Support E 99.2                       0.1     0.1 0.6 972 GC GC,UU 0 0 0 0.0 0.5 1.0 1.5 1.0 1.0 1.92 1.98 0.01 0.92
16S 30 944 1237 G:C No BP   No Support M 98.4       1.1     0.2         0.1       0.3 1152 GC   1 3 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 1.9 0.0 0.99
23S 90 2511 2577 U:A No BP   No Support T     99.1             0.9               778 UA   2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.93 2.0 0.0 0.74
23S 90 2511 2577 U:A No BP   No Support 3     100.0                             417 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.66
23S 90 2511 2577 U:A No BP   No Support B     100.0                             241 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74
23S 90 2511 2577 U:A No BP   No Support A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 90 2511 2577 U:A No BP   No Support C     100.0                             98 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.95
23S 90 2511 2577 U:A No BP   No Support E     100.0                             135 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.51
23S 90 2511 2577 U:A No BP   No Support M     97.3             2.7               263 UA,CA   2 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.84 2.0 0.0 0.84

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;