Base-pair collective (covariation) scores

329 rows where molecule = "16S" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, PE, DfDel

group_code 7

  • 3 47
  • A 47
  • B 47
  • C 47
  • E 47
  • M 47
  • T 47

conformation 4

strength 1

  • Weak · 329 ✖

molecule 1

  • 16S · 329 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
29 29 16S 1 13 21   v4 U:G No BP       Weak T 14 68 3 0.07 0.02 0.0 0.02 0.09 0.98 1.8 1.5 0.0 0.46 3890
30 30 16S 1 13 21   v4 U:G No BP       Weak 3 4 7 1 0.18 0.05 0.0 0.05 0.0 1.0 1.93 1.91 0.0 0.43 3097
31 31 16S 1 13 21   v4 U:G No BP       Weak B 4 6 1 0.2 0.05 0.0 0.05 0.0 0.99 1.94 1.89 0.0 0.36 2128
32 32 16S 1 13 21   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.58 154
33 33 16S 1 13 21   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.95 2.0 1.66 0.0 0.69 126
34 34 16S 1 13 21   v4 U:G No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.9 1.97 0.01 0.77 815
35 35 16S 1 13 21   v4 U:G No BP       Weak M 10 59 2 0.06 0.16 0.0 0.16 0.51 0.9 1.4 0.89 0.0 0.57 669
106 106 16S 3 35 549   v4 G:C cWW       Weak T 75 71 20 0.27 0.26 0.87 1.13 0.87 0.98 1.57 1.35 0.0 0.63 5420
107 107 16S 3 35 549   v4 G:C cWW       Weak 3 14 10 4 0.33 0.03 0.0 0.03 0.94 0.99 1.89 1.68 0.0 0.63 4555
108 108 16S 3 35 549   v4 G:C cWW       Weak B 10 2 2 0.33 0.11 0.0 0.11 0.99 0.99 1.91 1.94 0.0 0.59 3467
109 109 16S 3 35 549   v4 G:C cWW       Weak A 2 3 1 0.4 0.2 0.0 0.2 0.05 0.99 1.89 1.65 0.0 0.69 184
110 110 16S 3 35 549   v4 G:C cWW       Weak C 0 6 0 0.0 0.0 0.0 0.0 0.87 1.0 2.0 1.43 0.0 0.75 136
111 111 16S 3 35 549   v4 G:C cWW       Weak E 2 5 1 0.29 0.03 0.0 0.03 0.92 0.99 1.84 1.58 0.01 0.85 904
112 112 16S 3 35 549   v4 G:C cWW       Weak M 61 55 16 0.28 0.19 0.0 0.19 0.45 0.9 0.77 1.11 0.0 0.63 733
120 120 16S 3 37 547   v4 U:A tWS       Weak T 34 24 5 0.17 0.06 0.0 0.06 0.98 0.99 1.85 1.89 0.0 0.65 5551
121 121 16S 3 37 547   v4 U:A tWS       Weak 3 4 9 0 0.0 0.02 0.0 0.02 0.99 1.0 1.93 1.92 0.0 0.65 4665
122 122 16S 3 37 547   v4 U:A tWS       Weak B 4 5 0 0.0 0.02 0.0 0.02 0.99 0.99 1.94 1.91 0.0 0.61 3570
123 123 16S 3 37 547   v4 U:A tWS       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69 183
124 124 16S 3 37 547   v4 U:A tWS       Weak C 3 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.79 1.94 0.01 0.83 152
125 125 16S 3 37 547   v4 U:A tWS       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.99 1.0 1.9 1.91 0.01 0.86 912
126 126 16S 3 37 547   v4 U:A tWS       Weak M 27 15 5 0.24 0.09 0.0 0.09 0.92 0.93 1.48 1.78 0.0 0.63 738
127 127 16S 4 39 403   v4 G:C cWW       Weak T 95 98 28 0.29 0.45 0.82 1.27 0.82 0.83 1.17 0.93 0.0 0.68 5839
128 128 16S 4 39 403   v4 G:C cWW       Weak 3 24 35 6 0.2 0.24 0.81 1.05 0.81 0.82 1.57 1.12 0.0 0.69 4942
129 129 16S 4 39 403   v4 G:C cWW       Weak B 18 24 5 0.24 0.44 0.98 1.42 0.98 0.99 1.8 1.75 0.0 0.65 3830
130 130 16S 4 39 403   v4 G:C cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.93 0.0 0.73 193
131 131 16S 4 39 403   v4 G:C cWW       Weak C 1 3 1 0.5 0.33 0.99 1.32 0.99 0.99 1.89 1.81 0.0 0.85 154
132 132 16S 4 39 403   v4 G:C cWW       Weak E 6 10 1 0.12 0.05 0.0 0.05 0.07 0.08 1.54 1.69 0.01 0.86 919
133 133 16S 4 39 403   v4 G:C cWW       Weak M 70 60 21 0.32 0.49 0.84 1.33 0.84 0.86 0.76 0.62 0.0 0.64 747
204 204 16S 5 54 357   v4 C:G cWW       Weak T 12 6 2 0.22 0.29 0.99 1.28 0.99 1.0 1.92 1.94 0.0 0.73 6225
205 205 16S 5 54 357   v4 C:G cWW       Weak 3 6 2 1 0.25 0.41 1.0 1.4 1.0 1.0 1.94 1.94 0.0 0.74 5285
206 206 16S 5 54 357   v4 C:G cWW       Weak B 5 2 1 0.29 0.52 1.0 1.51 1.0 1.0 1.94 1.94 0.0 0.71 4138
207 207 16S 5 54 357   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.85 0.0 0.76 201
208 208 16S 5 54 357   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
209 209 16S 5 54 357   v4 C:G cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.98 0.0 0.9 946
210 210 16S 5 54 357   v4 C:G cWW       Weak M 6 4 1 0.2 0.04 0.0 0.04 0.97 0.99 1.74 1.91 0.0 0.68 791
211 211 16S 5 56 356   v4 U:A cWW       Weak T 4 4 1 0.25 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.73 6225
212 212 16S 5 56 356   v4 U:A cWW       Weak 3 2 2 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.73 5283
213 213 16S 5 56 356   v4 U:A cWW       Weak B 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.7 4124
214 214 16S 5 56 356   v4 U:A cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.8 0.02 0.74 201
215 215 16S 5 56 356   v4 U:A cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
216 216 16S 5 56 356   v4 U:A cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 958
217 217 16S 5 56 356   v4 U:A cWW       Weak M 2 2 1 0.5 0.0 0.0 0.0 0.99 0.99 1.89 1.91 0.0 0.68 793
225 225 16S 5 58 354   v4 C:G cWW       Weak T 16 11 3 0.22 0.46 0.99 1.45 0.99 0.99 1.87 1.88 0.0 0.74 6357
226 226 16S 5 58 354   v4 C:G cWW       Weak 3 9 6 2 0.27 0.54 0.99 1.54 0.99 0.99 1.9 1.89 0.0 0.75 5381
227 227 16S 5 58 354   v4 C:G cWW       Weak B 5 3 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.72 4221
228 228 16S 5 58 354   v4 C:G cWW       Weak A 4 3 2 0.57 0.91 0.98 1.88 0.98 0.98 1.24 1.11 0.02 0.74 200
229 229 16S 5 58 354   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
230 230 16S 5 58 354   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 960
231 231 16S 5 58 354   v4 C:G cWW       Weak M 7 5 1 0.17 0.26 0.98 1.24 0.98 0.99 1.69 1.82 0.0 0.71 827
239 239 16S 6 62 105   v4 U:G cWW       Weak T 65 65 17 0.26 0.21 0.96 1.16 0.03 0.97 1.64 1.66 0.0 0.76 6551
240 240 16S 6 62 105   v4 U:G cWW       Weak 3 9 18 1 0.07 0.01 0.0 0.01 0.02 0.99 1.9 1.87 0.0 0.78 5571
241 241 16S 6 62 105   v4 U:G cWW       Weak B 4 12 1 0.12 0.02 0.0 0.02 0.01 0.99 1.95 1.9 0.0 0.75 4404
242 242 16S 6 62 105   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.77 202
243 243 16S 6 62 105   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.94 0.01 0.89 162
244 244 16S 6 62 105   v4 U:G cWW       Weak E 5 6 0 0.0 0.0 0.0 0.0 0.0 0.0 1.72 -0.01 0.0 0.0 965
245 245 16S 6 62 105   v4 U:G cWW       Weak M 56 47 16 0.31 0.32 0.81 1.13 0.12 0.83 0.51 0.67 0.04 0.68 827
267 267 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak T 39 50 15 0.34 0.05 0.0 0.05 0.2 0.21 0.52 0.9 0.01 0.68 6584
268 268 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak 3 27 32 7 0.24 0.04 0.0 0.04 0.21 0.21 1.18 1.55 0.0 0.78 5599
269 269 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak B 15 18 1 0.06 0.13 0.0 0.13 0.01 0.01 1.86 1.76 0.0 0.75 4427
270 270 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak A 4 8 3 0.5 0.36 0.87 1.23 0.86 0.88 1.45 0.91 0.0 0.74 199
271 271 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak C 4 5 1 0.22 0.08 0.0 0.08 0.05 0.06 1.78 1.65 0.0 0.9 164
272 272 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak E 8 6 3 0.43 0.61 0.97 1.58 0.97 0.98 1.63 1.6 0.0 0.92 973
273 273 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak M 8 13 7 0.67 0.01 0.0 0.01 0.02 0.04 -0.33 -0.42 0.0 0.0 830
778 778 16S 12 292 308   v4 G:C cWW       Weak T 24 16 6 0.3 0.43 0.91 1.34 0.91 0.99 0.81 0.72 0.02 0.76 7204
779 779 16S 12 292 308   v4 G:C cWW       Weak 3 19 12 2 0.13 0.43 0.9 1.33 0.9 0.99 1.55 1.33 0.0 0.86 6174
780 780 16S 12 292 308   v4 G:C cWW       Weak B 4 4 1 0.25 0.33 0.99 1.33 0.99 1.0 1.93 1.95 0.0 0.84 4920
781 781 16S 12 292 308   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 229
782 782 16S 12 292 308   v4 G:C cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.92 167
783 783 16S 12 292 308   v4 G:C cWW       Weak E 15 8 1 0.09 0.03 0.0 0.03 0.44 0.95 0.87 1.76 0.0 0.97 1025
784 784 16S 12 292 308   v4 G:C cWW       Weak M 4 4 4 1.0 0.01 0.0 0.01 0.1 0.11 -0.31 -0.37 0.0 0.0 871
876 876 16S 14 342 347   v4 C:G cWW       Weak T 44 14 8 0.28 0.17 0.0 0.17 0.97 0.98 1.59 1.82 0.01 0.82 7119
877 877 16S 14 342 347   v4 C:G cWW       Weak 3 10 0 0 0.0 0.19 0.0 0.19 1.0 1.0 1.83 1.97 0.01 0.84 6131
878 878 16S 14 342 347   v4 C:G cWW       Weak B 8 0 0 0.0 0.04 0.0 0.04 0.99 1.0 1.82 1.97 0.01 0.82 4889
879 879 16S 14 342 347   v4 C:G cWW       Weak A 1 0 0 0.0 0.83 0.99 1.83 0.99 1.0 1.46 1.85 0.04 0.81 224
880 880 16S 14 342 347   v4 C:G cWW       Weak C 7 3 1 0.2 0.18 0.0 0.18 0.94 0.99 1.62 1.85 0.0 0.91 165
881 881 16S 14 342 347   v4 C:G cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.99 2.0 0.0 0.97 1018
882 882 16S 14 342 347   v4 C:G cWW       Weak M 27 11 7 0.37 0.17 0.0 0.17 0.81 0.83 0.51 1.02 0.02 0.65 831
911 911 16S 15 375 388   v4 U:G No BP       Weak T 10 30 4 0.2 0.05 0.0 0.05 0.01 0.99 1.94 1.68 0.02 0.8 6852
912 912 16S 15 375 388   v4 U:G No BP       Weak 3 3 21 1 0.08 0.01 0.0 0.01 0.0 0.99 1.96 1.88 0.0 0.81 5867
913 913 16S 15 375 388   v4 U:G No BP       Weak B 2 17 0 0.0 0.0 0.0 0.0 0.0 0.99 1.97 1.89 0.0 0.79 4613
914 914 16S 15 375 388   v4 U:G No BP       Weak A 0 3 0 0.0 0.0 0.0 0.0 0.02 1.0 1.81 1.85 0.02 0.84 228
915 915 16S 15 375 388   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 164
916 916 16S 15 375 388   v4 U:G No BP       Weak E 1 1 1 1.0 0.12 0.0 0.12 0.0 1.0 1.93 1.84 0.01 0.96 1026
917 917 16S 15 375 388   v4 U:G No BP       Weak M 7 8 3 0.4 0.09 0.0 0.09 0.06 0.99 1.82 0.84 0.11 0.71 829
946 946 16S 16 406 436   v4 G:C cWW       Weak T 30 18 5 0.21 0.47 0.99 1.46 0.99 1.0 0.58 0.59 0.01 0.63 7096
947 947 16S 16 406 436   v4 G:C cWW       Weak 3 5 9 1 0.14 0.05 0.0 0.05 0.99 1.0 1.0 0.96 0.0 0.71 6109
948 948 16S 16 406 436   v4 G:C cWW       Weak B 3 9 1 0.17 0.05 0.0 0.05 0.99 1.0 1.97 1.93 0.0 0.83 4861
949 949 16S 16 406 436   v4 G:C cWW       Weak A 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.86 1.91 0.0 0.82 218
950 950 16S 16 406 436   v4 G:C cWW       Weak C 2 3 1 0.4 0.33 0.99 1.32 0.99 0.99 1.91 1.85 0.0 0.89 162
951 951 16S 16 406 436   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.02 0.0 0.0 0.0 1030
952 952 16S 16 406 436   v4 G:C cWW       Weak M 23 6 3 0.21 0.05 0.0 0.05 0.1 0.11 -0.75 -0.43 0.0 0.0 833
974 974 16S 16 416 427   v4 G:U cWW       Weak T 48 72 10 0.17 0.07 0.0 0.07 0.19 0.97 0.35 0.05 0.0 0.61 7239
975 975 16S 16 416 427   v4 G:U cWW       Weak 3 26 58 3 0.07 0.05 0.0 0.05 0.17 0.97 0.66 0.32 0.0 0.69 6249
976 976 16S 16 416 427   v4 G:U cWW       Weak B 26 58 3 0.07 0.05 0.0 0.05 0.17 0.97 1.73 1.3 0.0 0.85 4982
977 977 16S 16 416 427   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 237
978 978 16S 16 416 427   v4 G:U cWW       Weak C 11 7 3 0.33 0.04 0.0 0.04 0.48 0.93 1.2 0.96 0.01 0.89 163
979 979 16S 16 416 427   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1030
980 980 16S 16 416 427   v4 G:U cWW       Weak M 11 7 4 0.44 0.03 0.0 0.03 0.07 0.1 -0.46 -0.42 0.0 0.0 835
995 995 16S 16 419 424   v4 C:G cWW       Weak T 103 33 16 0.23 0.1 0.0 0.1 0.82 1.0 -0.04 0.46 0.02 0.59 7217
996 996 16S 16 419 424   v4 C:G cWW       Weak 3 86 23 10 0.18 0.06 0.0 0.06 0.82 1.0 0.19 0.79 0.02 0.67 6225

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");