Base-pair collective (covariation) scores

11 rows where group_code = "T" and strength = "Significant" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair, tertiary_type, Xch, PE, PES, Cov3, WCGU, YCons, DfDel, PNuc, Seq

conformation 4

strength 1

  • Significant · 11 ✖

molecule 1

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3585 3585 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant T 12 11 6 0.52 0.28 0.94 1.22 0.06 0.06 0.42 0.29 0.01 0.49 719
3648 3648 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant T 23 25 11 0.46 0.35 0.62 0.97 0.45 0.46 -0.16 -0.86 0.12 0.39 740
3984 3984 23S 13 239 258   v4 C:G cWW       Significant T 88 82 33 0.39 0.25 0.42 0.67 0.47 0.72 0.25 -0.19 0.01 0.8 866
4103 4103 23S 18 287 353   v4 G:C cWW       Significant T 70 69 26 0.37 0.39 0.49 0.89 0.49 0.59 -0.88 -0.86 0.01 0.52 877
4831 4831 23S 33 688 774   v4 U:G No BP       Significant T 4 14 3 0.33 0.17 0.0 0.17 0.93 0.96 1.84 1.42 0.0 0.85 886
5328 5328 23S 38 874 903   v4 G:C cWW       Significant T 18 22 10 0.5 0.14 0.0 0.14 0.48 0.67 0.13 -0.62 0.01 0.6 859
5643 5643 23S 42 1035 1120   v4 U:G cWW       Significant T 9 13 5 0.46 0.23 0.96 1.19 0.04 0.99 0.49 0.39 0.0 0.6 858
6238 6238 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant T 26 35 4 0.13 0.59 0.8 1.39 0.66 0.67 -0.81 -0.5 0.2 0.47 844
6931 6931 23S 61 1667 1993   v4 G:U tSH       Significant T 4 6 2 0.4 0.5 0.99 1.49 0.02 0.99 1.81 1.87 0.0 0.77 807
8016 8016 23S 77 2124 2174   v4 G:C cWW       Significant T 3 2 2 0.8 0.29 0.99 1.28 0.99 0.99 0.4 0.41 0.0 0.55 847
8541 8541 23S 88 2401 2415   v4 U:G cWW       Significant T 30 23 14 0.53 0.13 0.0 0.13 0.3 0.95 -0.33 0.08 0.0 0.56 847

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");