Base-pair collective (covariation) scores

108 rows where group_code = "C" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov3, WCGU, DfDel, Seq

conformation 5

molecule 2

strength 1

  • Weak · 108 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3400 3400 23S 1 8 2895   v4 C:G cWW       Weak C 4 4 1 0.25 0.26 0.68 0.94 0.68 0.7 0.57 1.32 0.0 0.43 44
33 33 16S 1 13 21   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.95 2.0 1.66 0.0 0.69 126
110 110 16S 3 35 549   v4 G:C cWW       Weak C 0 6 0 0.0 0.0 0.0 0.0 0.87 1.0 2.0 1.43 0.0 0.75 136
124 124 16S 3 37 547   v4 U:A tWS       Weak C 3 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.79 1.94 0.01 0.83 152
131 131 16S 4 39 403   v4 G:C cWW       Weak C 1 3 1 0.5 0.33 0.99 1.32 0.99 0.99 1.89 1.81 0.0 0.85 154
208 208 16S 5 54 357   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
215 215 16S 5 56 356   v4 U:A cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
229 229 16S 5 58 354   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
243 243 16S 6 62 105   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.94 0.01 0.89 162
3666 3666 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak C 2 2 1 0.5 0.5 0.97 1.47 0.97 0.97 1.66 1.51 0.01 0.92 96
271 271 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak C 4 5 1 0.22 0.08 0.0 0.08 0.05 0.06 1.78 1.65 0.0 0.9 164
3876 3876 23S 10 158 168   v4 U:G cWW       Weak C 6 13 3 0.32 0.17 0.0 0.17 0.18 0.65 0.17 0.32 0.07 0.85 99
4058 4058 23S 16 274 363   v4 C:G cWW       Weak C 5 2 0 0.0 0.43 0.56 0.98 0.44 0.44 -0.85 -0.64 0.32 0.09 100
4065 4065 23S 18 281 359   v4 C:G cWW       Weak C 14 9 3 0.26 0.32 0.55 0.87 0.55 0.61 -0.8 -0.62 0.05 0.49 99
4086 4086 23S 18 284 356   v4 U:G cWW       Weak C 22 16 4 0.21 0.22 0.34 0.56 0.33 0.49 -0.48 -0.68 0.01 0.74 99
782 782 16S 12 292 308   v4 G:C cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.92 167
4149 4149 23S 18 293 347   v4 U:A cWW       Weak C 17 10 5 0.37 0.23 0.61 0.84 0.61 0.61 0.12 0.16 0.14 0.78 100
4247 4247 23S 20 327 335   v4 G:C cWW       Weak C 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 1.74 1.67 0.01 0.94 100
880 880 16S 14 342 347   v4 C:G cWW       Weak C 7 3 1 0.2 0.18 0.0 0.18 0.94 0.99 1.62 1.85 0.0 0.91 165
915 915 16S 15 375 388   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 164
4275 4275 23S 21 378 396   v4 C:G cWW       Weak C 3 1 1 0.5 0.33 0.94 1.27 0.07 0.98 1.47 1.81 0.0 0.97 100
4303 4303 23S 21 382 392   v4 A:U cWW       Weak C 10 0 0 0.0 0.05 0.0 0.05 0.4 0.98 0.93 1.76 0.0 0.96 100
950 950 16S 16 406 436   v4 G:C cWW       Weak C 2 3 1 0.4 0.33 0.99 1.32 0.99 0.99 1.91 1.85 0.0 0.89 162
978 978 16S 16 416 427   v4 G:U cWW       Weak C 11 7 3 0.33 0.04 0.0 0.04 0.48 0.93 1.2 0.96 0.01 0.89 163
999 999 16S 16 419 424   v4 C:G cWW       Weak C 10 7 4 0.47 0.21 0.88 1.09 0.88 0.99 1.33 1.63 0.0 0.9 165
4464 4464 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.01 2.0 1.63 0.0 0.97 100
4520 4520 23S 25.1 564 577   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
1258 1258 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak C 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.94 1.89 0.01 0.89 162
1307 1307 16S 20 584 757   v4 G:U cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.95 1.95 0.0 0.91 165
1370 1370 16S 21 594 645   v4 U:G cWW       Weak C 15 15 3 0.2 0.34 0.67 1.01 0.67 0.82 0.71 0.53 0.0 0.93 169
1384 1384 16S 21 597 643   v4 G:C cWW       Weak C 3 4 2 0.57 0.64 0.97 1.61 0.97 0.97 1.52 1.62 0.0 0.93 170
4660 4660 23S 27 600 657   v4 G:U cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.02 1.0 1.86 2.0 0.0 0.97 100
1440 1440 16S 21 605 633   v4 U:G cWW       Weak C 2 3 0 0.0 0.36 0.95 1.3 0.05 0.97 1.64 1.42 0.01 0.92 170
1447 1447 16S 21 606 632   v4 G:U No BP       Weak C 15 15 5 0.33 0.58 0.77 1.35 0.77 0.91 0.52 0.46 0.0 0.93 170
4758 4758 23S 31 641 647   v4 U:G cWW       Weak C 2 7 1 0.22 0.14 0.0 0.14 0.1 0.96 1.76 1.36 0.0 0.97 100
1524 1524 16S 22 658 748   v4 C:G cWW       Weak C 14 19 4 0.24 0.22 0.46 0.69 0.34 0.38 0.64 0.23 0.0 0.92 168
1566 1566 16S 22 666 740   v4 G:U cWW       Weak C 3 0 0 0.0 0.0 0.0 0.0 0.05 1.0 1.65 1.94 0.01 0.91 167
4765 4765 23S 32 671 809   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.82 0.02 0.95 100
1629 1629 16S 23 677 713   v4 U:G cWW       Weak C 4 14 2 0.22 0.07 0.0 0.07 0.78 0.97 1.73 1.14 0.01 0.92 169
1678 1678 16S 23 684 706   v4 U:A cWW       Weak C 3 3 2 0.67 0.27 0.91 1.18 0.89 0.89 1.3 1.67 0.0 0.92 168
4828 4828 23S 33 687 775   v4 C:G No BP       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.95 0.95 1.86 1.81 0.0 0.97 100
1699 1699 16S 23 690 697   v4 G:U tSH       Weak C 3 1 0 0.0 0.06 0.0 0.06 0.1 0.99 1.45 1.95 0.01 0.92 169
4884 4884 23S 33 695 767   v4 G:U cWW       Weak C 3 1 1 0.5 0.5 0.98 1.48 0.03 0.99 1.73 1.86 0.0 0.97 100
4933 4933 23S 34 703 729   v4 U:G No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.97 100
4940 4940 23S 34 707 724   v4 G:U cWW       Weak C 5 1 0 0.0 0.08 0.0 0.08 0.11 0.98 1.52 1.71 0.0 0.97 100
5136 5136 23S 37 826 831   v4 U:G cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.01 0.99 1.92 1.74 0.02 0.95 100
1874 1874 16S 26 832 854   v4 G:U cWW       Weak C 9 3 2 0.33 0.03 0.0 0.03 0.17 0.99 1.17 1.72 0.01 0.9 164
1937 1937 16S 26.1 861 868   v4 G:C cWW       Weak C 8 2 2 0.4 0.21 0.93 1.15 0.93 0.93 1.3 1.87 0.02 0.89 164
2028 2028 16S 28 925 1391   v4 G:U cWW       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.85 154
2084 2084 16S 28 935 1380   v4 A:U cWW       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.98 0.99 1.95 1.82 0.01 0.84 154
2119 2119 16S 29 942 1341   v4 G:U cWW       Weak C 5 1 1 0.33 0.38 0.97 1.34 0.02 0.97 1.38 1.87 0.03 0.85 160
2175 2175 16S 30 950 1231   v4 U:G cWW       Weak C 2 3 0 0.0 0.0 0.0 0.0 0.04 1.0 1.87 1.75 0.01 0.87 160
2217 2217 16S 31 960 975   v4 U:A No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.8 0.0 0.89 162
2224 2224 16S 31 961 974   v4 U:A No BP       Weak C 1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.83 1.95 0.0 0.9 163
5710 5710 23S 42 1051 1108   v4 G:U cWW       Weak C 2 1 0 0.0 0.0 0.0 0.0 0.85 0.99 1.37 1.74 0.02 0.95 100
2455 2455 16S 34 1052 1206   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.95 0.0 0.9 163
2462 2462 16S 34 1053 1205   v4 G:U No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 163
2483 2483 16S 34 1058 1199   v4 G:U cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.93 2.0 0.01 0.88 161
2735 2735 16S 40 1158 1178   v4 C:G No BP       Weak C 0 2 0 0.0 0.11 0.0 0.11 0.95 0.98 1.38 1.71 0.03 0.89 167
2742 2742 16S 40 1159 1177   v4 U:G No BP       Weak C 7 3 2 0.4 0.17 0.0 0.17 0.04 0.97 1.39 1.74 0.02 0.9 167
5955 5955 23S 46 1215 1234   v4 G:U cWW       Weak C 3 0 0 0.0 0.0 0.0 0.0 0.02 0.98 1.72 2.0 0.0 0.97 100
2854 2854 16S 41 1255 1282   v4 G:C cWW       Weak C 6 5 2 0.36 0.53 0.92 1.45 0.92 0.96 1.25 1.11 0.0 0.92 168
3022 3022 16S 44 1401 1501   v4 G:C cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.78 142
6417 6417 23S 54 1415 1587   v4 U:G cWW       Weak C 12 4 1 0.12 0.83 0.91 1.73 0.91 0.93 0.37 0.24 0.01 0.94 100
3155 3155 16S 44 1425 1475   v4 U:G cWW       Weak C 13 16 4 0.28 0.57 0.79 1.37 0.79 0.95 0.69 0.91 0.01 0.82 150
3197 3197 16S 44 1435 1466   v4 G:C cWW       Weak C 9 9 2 0.22 0.4 0.85 1.24 0.85 0.85 0.97 1.1 0.01 0.83 152
6515 6515 23S 56 1436 1556   v4 G:C cWW       Weak C 7 7 2 0.29 0.05 0.0 0.05 0.35 0.98 1.05 0.81 0.0 0.95 100
6529 6529 23S 56 1440 1551   v4 U:A cWW       Weak C 10 13 5 0.43 0.28 0.59 0.87 0.57 0.64 0.21 -0.32 0.09 0.73 100
3239 3239 16S 44 1442 1460   v4 G:C cWW       Weak C 0 14 0 0.0 0.69 0.89 1.57 0.89 0.92 0.32 0.23 0.01 0.78 154
6564 6564 23S 57 1445 1466   v4 G:U cWW       Weak C 8 2 2 0.4 0.64 0.88 1.52 0.34 1.0 -0.29 -0.58 0.38 0.4 100
6613 6613 23S 58 1468 1524   v4 U:G cWW       Weak C 6 8 1 0.14 0.33 0.68 1.01 0.58 0.65 0.04 -0.09 0.0 0.85 100
6648 6648 23S 58 1478 1513   v4 G:U cWW       Weak C 8 11 2 0.21 0.11 0.0 0.11 0.33 0.81 0.59 -0.18 0.02 0.84 100
6669 6669 23S 58 1481 1510   v4 U:G cWW       Weak C 7 0 0 0.0 0.5 0.82 1.32 0.64 0.64 -0.21 -0.46 0.0 0.0 100
6683 6683 23S 58 1483 1506   v4 G:U cWW       Weak C 12 3 1 0.13 0.25 0.79 1.04 0.03 0.14 -0.17 -0.37 0.15 0.56 100
3281 3281 16S 45 1506 1529   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 108
3316 3316 16S 45 1511 1524   v4 G:C cWW       Weak C 2 7 1 0.22 0.08 0.0 0.08 0.78 0.98 1.76 1.06 0.0 0.57 103
3323 3323 16S 45 1512 1523   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.63 114
6991 6991 23S 63 1707 1751   v4 G:U cWW       Weak C 8 16 5 0.42 0.02 0.0 0.02 0.49 0.99 1.23 1.14 0.0 0.98 101
7131 7131 23S 64 1770 1982   v4 G:U cWW       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.04 0.99 1.74 1.73 0.02 0.96 101
7152 7152 23S 65 1775 1789   v4 U:A tHS       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7229 7229 23S 66 1799 1820   v4 G:U No BP       Weak C 0 3 0 0.0 0.0 0.0 0.0 0.01 0.97 2.0 1.73 0.0 0.98 101
7243 7243 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak C 0 10 0 0.0 0.0 0.0 0.0 0.04 0.04 2.0 0.36 0.01 0.97 101
7299 7299 23S 68 1835 1905   v4 G:C cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7327 7327 23S 68 1841 1901   v4 U:A cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7334 7334 23S 68 1842 1898   v4 G:U cWW       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.92 0.0 0.98 101
7383 7383 23S 68 1851 1891   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.98 101
7474 7474 23S 69 1907 1923   v4 G:U cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.98 101
7502 7502 23S 69 1911 1919   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7523 7523 23S 71 1945 1961   v4 G:C cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7537 7537 23S 71 1947 1959   v4 C:G cWW       Weak C 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 1.92 1.92 0.0 0.98 101
7677 7677 23S 73 2056 2612   v4 G:C cWW       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.77 0.0 0.51 52
7698 7698 23S 74 2065 2445   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96 99
7761 7761 23S 74 2075 2434   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96 99
7768 7768 23S 75 2077 2243   v4 A:U cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 2.0 0.0 0.97 100
7894 7894 23S 76 2100 2189   v4 G:U cWW       Weak C 6 1 1 0.29 0.1 0.0 0.1 0.09 0.99 1.44 1.92 0.0 0.98 101
7957 7957 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak C 2 1 0 0.0 0.0 0.0 0.0 0.01 0.01 1.84 1.92 0.0 0.98 101
7992 7992 23S 77 2120 2178   v4 G:C cWW       Weak C 4 1 0 0.0 0.0 0.0 0.0 0.1 1.0 1.6 1.86 0.0 0.98 101
8048 8048 23S 78 2136 2155   v4 G:U cWW       Weak C 9 16 5 0.4 0.11 0.0 0.11 0.51 0.89 0.46 0.33 0.0 0.96 101
8097 8097 23S 78 2143 2148   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.62 1.62 0.0 0.93 101
8195 8195 23S 80 2249 2255   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.02 1.0 2.0 1.86 0.0 0.99 102

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");