Base-pair collective (covariation) scores

870 rows where group_code = "B" and molecule = "23S" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, PE, DfDel

conformation 9

strength 5

molecule 1

  • 23S · 870 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3349 3349 23S 1 1 2902   v4 G:C cWW       Strong B 11 10 3 0.29 0.67 0.92 1.58 0.92 0.96 0.63 0.73 0.05 0.49 173
3356 3356 23S 1 2 2901   v4 G:C cWW       Strong B 10 11 4 0.38 0.82 0.94 1.75 0.94 0.96 0.52 0.8 0.01 0.53 173
3363 3363 23S 1 3 2900   v4 U:A cWW       Strong B 7 10 5 0.59 0.43 0.83 1.26 0.87 0.9 0.38 0.63 0.01 0.52 173
3370 3370 23S 1 4 2899   v4 U:A cWW       Strong B 12 15 10 0.74 0.93 0.96 1.9 0.96 0.98 0.61 0.77 0.01 0.53 173
3377 3377 23S 1 5 2898   v4 A:U cWW       Strong B 3 1 0 0.0 1.0 1.0 2.0 1.0 1.0 1.66 1.95 0.01 0.53 174
3384 3384 23S 1 6 2897   v4 A:U cWW       Strong B 2 2 1 0.5 0.5 0.99 1.49 0.99 1.0 1.85 1.91 0.01 0.53 174
3391 3391 23S 1 7 2896   v4 G:C cWW       Strong B 5 4 4 0.89 0.88 0.99 1.87 0.99 0.99 1.64 1.66 0.01 0.54 177
3398 3398 23S 1 8 2895   v4 C:G cWW       Weak B 11 13 3 0.25 0.57 0.72 1.29 0.72 0.99 0.77 0.73 0.0 0.54 177
3405 3405 23S 2 15 525   v4 G:U cWW       Strong B 1 4 1 0.4 0.33 0.98 1.32 0.02 1.0 1.93 1.83 0.0 0.76 247
3412 3412 23S 2 16 524   v4 C:G cWW       Strong B 11 16 9 0.67 0.89 0.94 1.82 0.94 1.0 0.28 0.27 0.0 0.76 246
3419 3419 23S 2 17 523   v4 G:C cWW       Strong B 0 4 0 0.0 0.0 0.0 0.0 0.97 1.0 2.0 1.81 0.0 0.77 250
3426 3426 23S 2 18 522   v4 U:A cWW       Strong B 5 4 3 0.67 0.92 0.98 1.9 0.98 1.0 1.27 1.37 0.0 0.77 250
3433 3433 23S 2 19 521   v4 A:U cWW       Strong B 11 11 3 0.27 0.52 0.68 1.2 0.68 0.98 0.29 0.68 0.0 0.77 251
3440 3440 23S 2 20 520   v4 C:G cWW       Strong B 13 14 9 0.67 0.93 0.96 1.89 0.96 0.98 0.33 0.4 0.0 0.77 251
3447 3447 23S 2 21 519   v4 A:U cWW       Strong B 13 14 7 0.52 0.73 0.89 1.62 0.76 0.98 0.59 0.53 0.0 0.77 251
3454 3454 23S 2 22 518   v4 C:G cWW       Strong B 12 13 4 0.32 0.65 0.8 1.45 0.8 0.99 0.73 0.75 0.0 0.76 250
3461 3461 23S 2 23 517   v4 G:C cWW       Strong B 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.96 1.97 0.0 0.77 251
3468 3468 23S 2 24 516   v4 G:C cWW       Strong B 3 5 3 0.75 1.0 1.0 2.0 1.0 1.0 1.88 1.87 0.0 0.77 250
3475 3475 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong B 1 3 0 0.0 0.5 0.99 1.49 0.98 0.99 1.91 1.81 0.0 0.77 250
3482 3482 23S 3 31 474   v4 C:G cWW       Strong B 2 3 2 0.8 0.75 1.0 1.75 1.0 1.0 1.91 1.88 0.0 0.76 249
3489 3489 23S 3 32 473   v4 C:G cWW       Strong B 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.97 0.0 0.77 251
3496 3496 23S 4 35 445   v4 G:C cWW       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.77 251
3503 3503 23S 4 36 444   v4 G:C cWW       Strong B 3 2 1 0.4 0.69 0.98 1.68 0.98 0.98 1.66 1.71 0.0 0.77 251
3510 3510 23S 4 37 442   v4 C:G cWW       Strong B 5 4 3 0.67 0.77 0.99 1.76 0.99 1.0 1.63 1.73 0.0 0.77 250
3517 3517 23S 4 38 441   v4 A:U cWW       Strong B 12 13 11 0.88 1.0 1.0 2.0 1.0 1.0 1.12 1.13 0.0 0.77 250
3524 3524 23S 4 39 440   v4 G:C cWW       Strong B 12 13 8 0.64 0.99 0.99 1.98 0.99 1.0 0.13 0.19 0.0 0.77 250
3531 3531 23S 4 40 439   v4 U:A cWW       Strong B 14 15 14 0.97 0.99 1.0 1.98 1.0 1.0 0.81 0.79 0.0 0.76 248
3538 3538 23S 4 41 438   v4 C:G cWW       Strong B 17 15 14 0.88 1.0 1.0 2.0 1.0 1.0 0.24 0.22 0.0 0.76 250
3545 3545 23S 4 42 437   v4 A:U cWW       Strong B 10 11 8 0.76 0.99 1.0 1.99 1.0 1.0 0.92 0.9 0.0 0.77 250
3552 3552 23S 4 43 436   v4 G:C cWW       Strong B 13 13 11 0.85 0.82 0.92 1.74 0.92 0.92 0.49 0.41 0.0 0.76 250
3559 3559 23S 4 44 434   v4 A:U cWW       Strong B 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.96 1.93 0.0 0.76 249
3566 3566 23S 4 45 433   v4 G:C cWW       Strong B 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.8 1.82 0.0 0.76 249
3573 3573 23S 4.1 46 179   v4 G:C cWW       Strong B 5 4 5 1.0 0.98 0.99 1.97 0.99 0.99 0.92 0.8 0.01 0.76 250
3580 3580 23S 4.1 47 178   v4 C:G cWW       Strong B 1 1 0 0.0 0.0 0.0 0.0 0.99 1.0 1.91 1.97 0.0 0.76 249
3587 3587 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant B 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.77 252
3594 3594 23S 5 54 116   v4 G:C cWW       Strong B 2 3 2 0.8 0.91 1.0 1.91 1.0 1.0 1.76 1.75 0.0 0.78 253
3601 3601 23S 5 55 115   v4 G:C cWW       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.77 252
3608 3608 23S 5 56 114   v4 A:U cWW       Strong B 4 6 2 0.4 0.88 0.99 1.87 0.99 1.0 1.62 1.6 0.0 0.78 253
3615 3615 23S 6 57 70   v4 C:G cWW       Strong B 2 1 1 0.67 0.97 1.0 1.97 1.0 1.0 1.44 1.46 0.0 0.77 252
3622 3622 23S 6 58 69   v4 G:C cWW       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.77 252
3629 3629 23S 6 59 68   v4 U:G cWW       Strong B 8 6 3 0.43 0.26 0.62 0.88 0.52 1.0 0.66 0.95 0.0 0.78 254
3636 3636 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong B 16 17 12 0.73 0.86 0.91 1.76 0.91 0.91 0.09 0.12 0.0 0.78 254
3643 3643 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong B 15 12 9 0.67 0.55 0.69 1.23 0.69 0.7 0.3 0.12 0.0 0.79 257
3650 3650 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant B 11 11 8 0.73 0.49 0.67 1.16 0.67 0.67 0.76 0.15 0.0 0.79 257
3657 3657 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong B 15 17 14 0.88 0.84 0.91 1.75 0.91 0.99 0.12 0.17 0.0 0.79 257
3664 3664 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak B 2 1 0 0.0 0.29 0.96 1.25 0.96 0.98 1.63 1.86 0.0 0.79 257
3671 3671 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong B 8 10 3 0.33 0.58 0.88 1.46 0.88 0.95 0.84 0.9 0.0 0.78 256
3678 3678 23S 7 76 110   v4 C:G cWW       Strong B 6 5 4 0.73 0.44 0.98 1.43 0.98 0.99 1.76 1.81 0.0 0.79 258
3685 3685 23S 7 77 109   v4 G:C cWW       Strong B 17 17 16 0.94 0.99 1.0 1.99 1.0 1.0 0.7 0.73 0.0 0.79 258
3692 3692 23S 7 78 108   v4 U:G cWW       Strong B 29 24 13 0.49 0.36 0.6 0.96 0.59 0.99 0.36 0.37 0.0 0.79 258
3699 3699 23S 7 79 107   v4 C:G cWW       Strong B 18 16 11 0.65 0.85 0.96 1.8 0.96 1.0 0.8 0.91 0.0 0.79 258
3706 3706 23S 7 80 106   v4 G:C cWW       Strong B 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.79 258
3713 3713 23S 7 81 105   v4 G:C cWW       Strong B 6 7 4 0.61 0.8 0.98 1.78 0.98 0.99 1.41 1.46 0.0 0.79 257
3720 3720 23S 7 82 104   v4 U:A tSH       Strong B 7 16 3 0.26 0.65 0.86 1.51 0.09 0.72 0.66 0.52 0.0 0.79 258
3727 3727 23S 7 85 97   v4 G:C cWW       Strong B 4 5 4 0.89 0.56 0.98 1.54 0.98 1.0 1.84 1.76 0.0 0.79 257
3734 3734 23S 7 86 96   v4 G:C cWW       Strong B 22 22 20 0.91 0.84 0.96 1.8 0.96 1.0 0.75 0.88 0.0 0.79 257
3741 3741 23S 7 87 95   v4 U:A cWW       Strong B 16 19 14 0.8 0.86 0.96 1.83 0.96 0.97 0.89 0.89 0.0 0.79 257
3748 3748 23S 8 121 130   v4 G:C cWW       Strong B 2 3 1 0.4 0.09 0.0 0.09 0.96 0.99 1.87 1.66 0.01 0.8 264
3755 3755 23S 8 122 129   v4 G:C cWW       Strong B 1 1 1 1.0 0.83 1.0 1.83 1.0 1.0 1.82 1.8 0.0 0.81 265
3762 3762 23S 8 123 128   v4 G:C cWW       Strong B 2 2 2 1.0 0.86 1.0 1.85 1.0 1.0 1.8 1.75 0.0 0.81 264
3769 3769 23S 9 131 148   v4 A:U cWW       Strong B 12 12 11 0.92 0.99 1.0 1.99 1.0 1.0 0.81 0.79 0.0 0.8 267
3776 3776 23S 9 132 147   v4 G:C cWW       Strong B 21 22 15 0.7 0.67 0.78 1.45 0.78 1.0 0.35 0.25 0.0 0.81 267
3783 3783 23S 9 133 146   v4 U:A cWW       Strong B 19 17 15 0.83 0.94 0.97 1.91 0.97 0.98 0.6 0.7 0.0 0.81 267
3790 3790 23S 9 134 145   v4 G:C cWW       Strong B 25 24 23 0.94 0.97 0.98 1.95 0.98 0.99 0.07 0.1 0.01 0.8 268
3797 3797 23S 9 135 144   v4 U:A cWW       Strong B 18 25 19 0.88 0.95 0.97 1.92 0.97 1.0 -0.13 -0.09 0.01 0.79 268
3804 3804 23S 9 136 143   v4 G:C cWW       Strong B 12 11 11 0.96 0.87 0.92 1.79 0.92 0.96 -0.51 -0.57 0.0 0.68 268
3811 3811 23S 9 137 142   v4 U:A cWW       Strong B 15 15 11 0.73 0.73 0.81 1.53 0.81 0.92 -0.72 -0.58 0.0 0.63 268
3818 3818 23S 10 150 176   v4 U:A cWW       Strong B 13 14 11 0.81 0.92 0.98 1.9 0.98 0.99 1.11 1.15 0.0 0.82 270
3825 3825 23S 10 151 175   v4 C:G cWW       Strong B 21 19 18 0.9 0.94 0.98 1.92 0.98 1.0 0.76 0.82 0.0 0.82 270
3832 3832 23S 10 152 174   v4 A:U cWW       Strong B 28 29 22 0.77 0.81 0.88 1.7 0.88 0.95 0.01 0.11 0.0 0.82 270
3839 3839 23S 10 153 173   v4 U:A cWW       Strong B 23 22 19 0.84 0.84 0.91 1.74 0.91 0.97 -0.14 -0.06 0.0 0.78 270
3846 3846 23S 10 154 172   v4 U:A cWW       Strong B 23 21 18 0.82 0.85 0.91 1.76 0.91 0.98 -0.14 -0.17 0.0 0.76 270
3853 3853 23S 10 155 171   v4 A:U cWW       Strong B 30 30 23 0.77 0.92 0.95 1.87 0.95 1.0 -0.24 -0.25 0.0 0.76 270
3860 3860 23S 10 156 170   v4 A:U cWW       Strong B 26 26 18 0.69 0.81 0.86 1.67 0.86 0.99 -0.36 -0.36 0.0 0.76 270
3867 3867 23S 10 157 169   v4 C:G cWW       Strong B 17 15 12 0.75 0.73 0.91 1.64 0.91 1.0 0.21 0.43 0.0 0.76 270
3874 3874 23S 10 158 168   v4 U:G cWW       Weak B 5 3 1 0.25 0.11 0.0 0.11 0.03 0.99 1.15 1.28 0.0 0.75 270
3881 3881 23S 11 183 214   v4 C:G cWW       Strong B 1 1 1 1.0 0.5 1.0 1.5 0.99 0.99 1.94 1.92 0.0 0.83 270
3888 3888 23S 11 184 212   v4 C:G cWW       Strong B 10 12 8 0.73 0.82 0.95 1.77 0.95 1.0 1.04 0.94 0.0 0.83 270
3895 3895 23S 11 185 211   v4 G:C cWW       Strong B 22 21 19 0.88 0.96 0.98 1.93 0.98 1.0 0.29 0.28 0.0 0.83 270
3902 3902 23S 11 186 210   v4 G:C cWW       Strong B 15 17 13 0.81 0.89 0.97 1.85 0.97 1.0 1.01 0.96 0.0 0.83 270
3909 3909 23S 11 187 209   v4 G:C cWW       Strong B 3 2 1 0.4 0.95 0.99 1.94 0.99 1.0 1.22 1.24 0.0 0.82 269
3916 3916 23S 11 188 208   v4 G:C cWW       Strong B 19 13 4 0.25 0.45 0.72 1.17 0.72 0.85 0.28 0.54 0.0 0.82 271
3923 3923 23S 11 194 201   v4 G:C cWW       Strong B 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.94 1.94 0.0 0.83 271
3930 3930 23S 11 195 200   v4 A:U tSH       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.83 271
3937 3937 23S 12 224 231   v4 U:A cWW       Strong B 8 8 6 0.75 1.0 1.0 2.0 1.0 1.0 0.67 0.67 0.0 0.85 277
3944 3944 23S 12 225 230   v4 C:G cWW       Strong B 8 10 8 0.89 0.95 0.99 1.94 0.99 0.99 1.32 1.34 0.0 0.85 276
3951 3951 23S 12.1 234 430   v4 U:A tWW       Strong B 5 6 5 0.91 1.0 1.0 2.0 1.0 1.0 1.54 1.58 0.0 0.84 276
3958 3958 23S 13 235 262   v4 U:A cWW       Strong B 2 3 1 0.4 0.67 1.0 1.66 1.0 1.0 1.9 1.88 0.0 0.84 274
3965 3965 23S 13 236 261   v4 C:G cWW       Strong B 8 9 6 0.71 0.96 0.99 1.95 0.99 0.99 1.2 1.02 0.01 0.83 276
3972 3972 23S 13 237 260   v4 C:G cWW       Strong B 4 0 0 0.0 0.0 0.0 0.0 0.95 1.0 1.73 1.96 0.0 0.84 274
3979 3979 23S 13 238 259   v4 C:G cWW       Strong B 13 14 14 1.0 0.9 0.97 1.86 0.97 1.0 1.05 0.82 0.01 0.83 276
3986 3986 23S 13 239 258   v4 C:G cWW       Significant B 27 21 9 0.38 0.26 0.61 0.87 0.44 0.92 0.67 0.41 0.0 0.84 276
3993 3993 23S 13 245 253   v4 G:C cWW       Strong B 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.93 1.97 0.0 0.85 277
4000 4000 23S 13 246 252   v4 C:G cWW       Strong B 9 2 2 0.36 0.02 0.0 0.02 0.65 1.0 1.03 1.85 0.0 0.85 277
4007 4007 23S 14 265 427   v4 A:U tSS       Strong B 1 1 0 0.0 0.0 0.0 0.0 0.97 0.98 1.94 1.87 0.0 0.85 277
4014 4014 23S 14 266 426   v4 G:C cWW       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.85 276
4021 4021 23S 14 267 425   v4 C:G cWW       Strong B 7 7 6 0.86 0.99 1.0 1.99 1.0 1.0 0.74 0.74 0.0 0.85 276
4028 4028 23S 14 268 424   v4 C:G cWW       Strong B 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.64 1.64 0.0 0.85 277
4035 4035 23S 16 271 366   v4 G:C cWW       Strong B 5 1 0 0.0 0.9 0.95 1.85 0.95 0.97 -0.36 -0.15 0.07 0.67 277
4042 4042 23S 16 272 365   v4 A:U cWW       Strong B 7 4 0 0.0 0.79 0.9 1.68 0.9 0.97 -0.4 -0.14 0.05 0.7 277

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");