Base-pair collective (covariation) scores

108 rows where group_code = "A" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov3, WCGU, DfDel

conformation 5

molecule 2

strength 1

  • Weak · 108 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3399 3399 23S 1 8 2895   v4 C:G cWW       Weak A 5 8 2 0.31 0.9 0.93 1.82 0.93 0.96 0.1 -0.3 0.07 0.68 33
32 32 16S 1 13 21   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.58 154
109 109 16S 3 35 549   v4 G:C cWW       Weak A 2 3 1 0.4 0.2 0.0 0.2 0.05 0.99 1.89 1.65 0.0 0.69 184
123 123 16S 3 37 547   v4 U:A tWS       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69 183
130 130 16S 4 39 403   v4 G:C cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.93 0.0 0.73 193
207 207 16S 5 54 357   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.85 0.0 0.76 201
214 214 16S 5 56 356   v4 U:A cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.8 0.02 0.74 201
228 228 16S 5 58 354   v4 C:G cWW       Weak A 4 3 2 0.57 0.91 0.98 1.88 0.98 0.98 1.24 1.11 0.02 0.74 200
242 242 16S 6 62 105   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.77 202
3665 3665 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.69 0.0 0.88 36
270 270 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak A 4 8 3 0.5 0.36 0.87 1.23 0.86 0.88 1.45 0.91 0.0 0.74 199
3875 3875 23S 10 158 168   v4 U:G cWW       Weak A 1 1 1 1.0 0.5 0.75 1.25 0.0 0.25 -0.59 -0.37 0.07 0.1 36
4057 4057 23S 16 274 363   v4 C:G cWW       Weak A 4 4 1 0.25 0.58 0.72 1.31 0.72 0.75 0.44 0.59 0.0 0.88 36
4064 4064 23S 18 281 359   v4 C:G cWW       Weak A 5 5 3 0.6 0.79 0.86 1.65 0.86 0.92 0.15 0.06 0.0 0.88 36
4085 4085 23S 18 284 356   v4 U:G cWW       Weak A 3 2 0 0.0 0.3 0.81 1.11 0.81 0.94 0.95 1.18 0.0 0.88 36
781 781 16S 12 292 308   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 229
4148 4148 23S 18 293 347   v4 U:A cWW       Weak A 1 2 1 0.67 0.21 0.57 0.78 0.49 0.69 0.37 0.92 0.02 0.85 36
4246 4246 23S 20 327 335   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
879 879 16S 14 342 347   v4 C:G cWW       Weak A 1 0 0 0.0 0.83 0.99 1.83 0.99 1.0 1.46 1.85 0.04 0.81 224
914 914 16S 15 375 388   v4 U:G No BP       Weak A 0 3 0 0.0 0.0 0.0 0.0 0.02 1.0 1.81 1.85 0.02 0.84 228
4274 4274 23S 21 378 396   v4 C:G cWW       Weak A 4 2 2 0.67 0.37 0.68 1.04 0.32 1.0 0.49 1.01 0.0 0.9 37
4302 4302 23S 21 382 392   v4 A:U cWW       Weak A 1 1 1 1.0 1.0 1.0 2.0 0.22 0.22 1.25 1.25 0.0 0.9 37
949 949 16S 16 406 436   v4 G:C cWW       Weak A 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.86 1.91 0.0 0.82 218
977 977 16S 16 416 427   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 237
998 998 16S 16 419 424   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 237
4463 4463 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak A 2 3 1 0.4 0.18 0.0 0.18 0.76 1.0 1.7 1.12 0.0 0.9 37
4519 4519 23S 25.1 564 577   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
1257 1257 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.83 220
1306 1306 16S 20 584 757   v4 G:U cWW       Weak A 1 1 0 0.0 0.0 0.0 0.0 0.02 1.0 1.96 1.72 0.0 0.83 219
1369 1369 16S 21 594 645   v4 U:G cWW       Weak A 11 10 3 0.29 0.12 0.0 0.12 0.45 0.96 0.86 1.09 0.0 0.88 231
1383 1383 16S 21 597 643   v4 G:C cWW       Weak A 3 0 0 0.0 0.0 0.0 0.0 0.96 0.96 1.77 1.95 0.0 0.88 233
4659 4659 23S 27 600 657   v4 G:U cWW       Weak A 1 1 0 0.0 0.0 0.0 0.0 0.3 1.0 1.59 1.25 0.0 0.9 37
1439 1439 16S 21 605 633   v4 U:G cWW       Weak A 10 8 2 0.22 0.64 0.81 1.46 0.44 0.99 0.51 0.6 0.01 0.86 230
1446 1446 16S 21 606 632   v4 G:U No BP       Weak A 3 14 0 0.0 0.08 0.0 0.08 0.07 0.59 0.86 1.0 0.01 0.87 232
4757 4757 23S 31 641 647   v4 U:G cWW       Weak A 4 0 0 0.0 0.0 0.0 0.0 0.27 1.0 0.67 1.43 0.0 0.83 37
1523 1523 16S 22 658 748   v4 C:G cWW       Weak A 3 7 2 0.4 0.38 0.59 0.97 0.33 0.33 0.66 0.66 0.0 0.83 219
1565 1565 16S 22 666 740   v4 G:U cWW       Weak A 2 6 1 0.25 0.35 0.67 1.02 0.51 1.0 1.23 0.48 0.0 0.84 222
4764 4764 23S 32 671 809   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
1628 1628 16S 23 677 713   v4 U:G cWW       Weak A 2 4 0 0.0 0.0 0.0 0.0 0.88 0.9 1.85 1.51 0.0 0.88 232
1677 1677 16S 23 684 706   v4 U:A cWW       Weak A 3 3 0 0.0 0.24 0.89 1.13 0.86 0.86 1.43 1.72 0.0 0.87 230
4827 4827 23S 33 687 775   v4 C:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
1698 1698 16S 23 690 697   v4 G:U tSH       Weak A 2 0 0 0.0 0.0 0.0 0.0 0.34 1.0 1.07 2.0 0.0 0.88 233
4883 4883 23S 33 695 767   v4 G:U cWW       Weak A 0 6 0 0.0 0.06 0.0 0.06 0.46 1.0 1.82 0.86 0.0 0.9 37
4932 4932 23S 34 703 729   v4 U:G No BP       Weak A 3 0 0 0.0 0.0 0.0 0.0 0.32 1.0 1.09 2.0 0.0 0.9 37
4939 4939 23S 34 707 724   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.9 37
5135 5135 23S 37 826 831   v4 U:G cWW       Weak A 2 0 0 0.0 0.0 0.0 0.0 0.19 1.0 1.3 2.0 0.0 0.9 37
1873 1873 16S 26 832 854   v4 G:U cWW       Weak A 2 2 1 0.5 0.06 0.0 0.06 0.06 0.99 1.75 1.72 0.0 0.87 230
1936 1936 16S 26.1 861 868   v4 G:C cWW       Weak A 0 5 0 0.0 0.0 0.0 0.0 0.83 1.0 1.91 1.36 0.0 0.87 231
2027 2027 16S 28 925 1391   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.67 177
2083 2083 16S 28 935 1380   v4 A:U cWW       Weak A 3 1 1 0.5 1.0 1.0 2.0 1.0 1.0 1.77 1.92 0.0 0.72 189
2118 2118 16S 29 942 1341   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.72 191
2174 2174 16S 30 950 1231   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.91 2.0 0.0 0.7 184
2216 2216 16S 31 960 975   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.79 208
2223 2223 16S 31 961 974   v4 U:A No BP       Weak A 3 2 0 0.0 0.0 0.0 0.0 0.07 0.85 1.79 1.22 0.0 0.79 209
5709 5709 23S 42 1051 1108   v4 G:U cWW       Weak A 1 1 0 0.0 0.44 0.86 1.31 0.86 1.0 1.5 1.2 0.0 0.88 36
2454 2454 16S 34 1052 1206   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.02 0.99 1.84 2.0 0.0 0.7 186
2461 2461 16S 34 1053 1205   v4 G:U No BP       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.92 0.0 0.75 197
2482 2482 16S 34 1058 1199   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.74 195
2734 2734 16S 40 1158 1178   v4 C:G No BP       Weak A 1 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 2.0 0.0 0.74 195
2741 2741 16S 40 1159 1177   v4 U:G No BP       Weak A 7 1 0 0.0 0.01 0.0 0.01 0.53 0.99 1.0 1.92 0.0 0.75 198
5954 5954 23S 46 1215 1234   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.9 37
2853 2853 16S 41 1255 1282   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.78 207
3021 3021 16S 44 1401 1501   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.39 104
6416 6416 23S 54 1415 1587   v4 U:G cWW       Weak A 2 3 1 0.4 0.93 0.97 1.9 0.97 1.0 -0.17 -0.04 0.0 0.76 41
3154 3154 16S 44 1425 1475   v4 U:G cWW       Weak A 11 7 4 0.44 0.36 0.65 1.01 0.53 1.0 0.3 -0.07 0.07 0.56 171
3196 3196 16S 44 1435 1466   v4 G:C cWW       Weak A 1 0 0 0.0 0.0 0.0 0.0 0.98 0.99 1.75 1.71 0.0 0.64 173
6514 6514 23S 56 1436 1556   v4 G:C cWW       Weak A 0 1 0 0.0 0.5 0.98 1.48 0.98 1.0 1.83 1.72 0.0 1.0 41
6528 6528 23S 56 1440 1551   v4 U:A cWW       Weak A 1 5 0 0.0 0.1 0.0 0.1 0.58 1.0 1.67 0.87 0.0 1.0 41
3238 3238 16S 44 1442 1460   v4 G:C cWW       Weak A 11 11 4 0.36 0.51 0.63 1.14 0.65 0.98 -0.17 0.11 0.01 0.61 169
6563 6563 23S 57 1445 1466   v4 G:U cWW       Weak A 3 3 1 0.33 0.25 0.71 0.96 0.17 0.27 0.83 1.13 0.0 1.0 41
6612 6612 23S 58 1468 1524   v4 U:G cWW       Weak A 4 3 2 0.57 0.65 0.81 1.46 0.35 0.43 -0.06 0.52 0.1 0.9 41
6647 6647 23S 58 1478 1513   v4 G:U cWW       Weak A 0 4 0 0.0 0.0 0.0 0.0 0.61 0.88 1.38 1.16 0.0 1.0 41
6668 6668 23S 58 1481 1510   v4 U:G cWW       Weak A 2 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.3 -0.23 0.0 0.0 41
6682 6682 23S 58 1483 1506   v4 G:U cWW       Weak A 5 3 2 0.5 0.78 0.88 1.66 0.54 0.98 0.64 0.87 0.0 1.0 41
3280 3280 16S 45 1506 1529   v4 U:G No BP       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.0 0.95 2.0 1.71 0.0 0.3 80
3315 3315 16S 45 1511 1524   v4 G:C cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.97 1.0 2.0 1.83 0.0 0.3 80
3322 3322 16S 45 1512 1523   v4 U:G cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.05 1.0 2.0 1.75 0.0 0.31 82
6990 6990 23S 63 1707 1751   v4 G:U cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.02 1.0 2.0 1.83 0.0 1.0 41
7130 7130 23S 64 1770 1982   v4 G:U cWW       Weak A 2 1 1 0.67 0.5 0.95 1.45 0.95 1.0 1.44 1.72 0.0 1.0 41
7151 7151 23S 65 1775 1789   v4 U:A tHS       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7228 7228 23S 66 1799 1820   v4 G:U No BP       Weak A 0 2 0 0.0 0.0 0.0 0.0 0.9 1.0 2.0 1.54 0.0 1.0 41
7242 7242 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak A 2 1 0 0.0 0.7 0.93 1.63 0.0 0.76 0.92 1.29 0.0 1.0 41
7298 7298 23S 68 1835 1905   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7326 7326 23S 68 1841 1901   v4 U:A cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7333 7333 23S 68 1842 1898   v4 G:U cWW       Weak A 0 2 0 0.0 0.0 0.0 0.0 0.1 1.0 2.0 1.54 0.0 1.0 41
7382 7382 23S 68 1851 1891   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41
7473 7473 23S 69 1907 1923   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41
7501 7501 23S 69 1911 1919   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7522 7522 23S 71 1945 1961   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7536 7536 23S 71 1947 1959   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7676 7676 23S 73 2056 2612   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7697 7697 23S 74 2065 2445   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7760 7760 23S 74 2075 2434   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7767 7767 23S 75 2077 2243   v4 A:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7893 7893 23S 76 2100 2189   v4 G:U cWW       Weak A 2 5 1 0.29 0.09 0.0 0.09 0.49 0.85 1.54 0.41 0.0 1.0 41
7956 7956 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak A 1 4 0 0.0 0.0 0.0 0.0 0.54 0.68 1.62 0.43 0.0 1.0 41
7991 7991 23S 77 2120 2178   v4 G:C cWW       Weak A 1 2 1 0.67 0.67 0.98 1.64 0.98 1.0 1.72 1.55 0.0 1.0 41
8047 8047 23S 78 2136 2155   v4 G:U cWW       Weak A 6 5 3 0.55 0.56 0.76 1.32 0.54 0.81 0.47 0.51 0.0 1.0 41
8096 8096 23S 78 2143 2148   v4 C:G cWW       Weak A 3 0 0 0.0 0.0 0.0 0.0 0.81 1.0 1.29 2.0 0.0 1.0 41
8194 8194 23S 80 2249 2255   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");