Base-pair collective (covariation) scores

11 rows where group_code = "A" and strength = "Significant" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

conformation 4

strength 1

  • Significant · 11 ✖

molecule 1

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3588 3588 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant A 1 1 0 0.0 0.0 0.0 0.0 0.17 0.17 1.69 1.5 0.0 0.88 36
3651 3651 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.88 36
3987 3987 23S 13 239 258   v4 C:G cWW       Significant A 3 3 2 0.67 0.5 0.89 1.39 0.17 0.94 1.28 1.12 0.0 0.88 36
4106 4106 23S 18 287 353   v4 G:C cWW       Significant A 5 4 3 0.67 0.55 0.72 1.27 0.72 0.83 0.21 0.35 0.0 0.88 36
4834 4834 23S 33 688 774   v4 U:G No BP       Significant A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
5331 5331 23S 38 874 903   v4 G:C cWW       Significant A 0 7 0 0.0 0.05 0.0 0.05 0.41 0.86 1.82 0.61 0.0 0.9 37
5646 5646 23S 42 1035 1120   v4 U:G cWW       Significant A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.77 2.0 0.02 0.88 37
6241 6241 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant A 0 6 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.2 1.0 0.0 41
6934 6934 23S 61 1667 1993   v4 G:U tSH       Significant A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41
8019 8019 23S 77 2124 2174   v4 G:C cWW       Significant A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
8544 8544 23S 88 2401 2415   v4 U:G cWW       Significant A 4 2 1 0.33 0.42 0.83 1.25 0.83 0.95 0.84 1.34 0.0 1.0 41

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");