Base-pair collective (covariation) scores

870 rows where group_code = 3 and molecule = "23S" sorted by position_1

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conformation 9

strength 5

molecule 1

  • 23S · 870 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3348 3348 23S 1 1 2902   v4 G:C cWW       Strong 3 14 10 3 0.25 0.61 0.9 1.5 0.9 0.95 -0.19 -0.23 0.04 0.27 246
3355 3355 23S 1 2 2901   v4 G:C cWW       Strong 3 13 13 4 0.31 0.8 0.92 1.73 0.92 0.95 -0.43 -0.33 0.03 0.29 246
3362 3362 23S 1 3 2900   v4 U:A cWW       Strong 3 11 12 6 0.52 0.58 0.85 1.44 0.85 0.88 -0.4 -0.38 0.02 0.29 247
3369 3369 23S 1 4 2899   v4 U:A cWW       Strong 3 18 19 13 0.7 0.92 0.96 1.88 0.96 0.97 -0.36 -0.37 0.02 0.31 247
3376 3376 23S 1 5 2898   v4 A:U cWW       Strong 3 10 6 3 0.38 0.89 0.98 1.87 0.98 0.99 0.26 0.3 0.03 0.32 248
3383 3383 23S 1 6 2897   v4 A:U cWW       Strong 3 7 6 3 0.46 0.87 0.98 1.85 0.98 0.98 0.36 0.28 0.03 0.32 248
3390 3390 23S 1 7 2896   v4 G:C cWW       Strong 3 10 7 4 0.47 0.81 0.98 1.78 0.98 0.99 0.33 0.33 0.01 0.33 251
3397 3397 23S 1 8 2895   v4 C:G cWW       Weak 3 22 21 5 0.23 0.62 0.75 1.37 0.75 0.99 -0.14 -0.16 0.01 0.33 251
3404 3404 23S 2 15 525   v4 G:U cWW       Strong 3 14 19 4 0.24 0.64 0.87 1.51 0.26 0.94 0.63 0.68 0.0 0.63 399
3411 3411 23S 2 16 524   v4 C:G cWW       Strong 3 19 36 12 0.44 0.82 0.88 1.7 0.88 0.99 0.1 0.05 0.0 0.63 398
3418 3418 23S 2 17 523   v4 G:C cWW       Strong 3 7 12 5 0.53 0.91 0.96 1.88 0.96 0.99 0.62 0.38 0.0 0.64 402
3425 3425 23S 2 18 522   v4 U:A cWW       Strong 3 13 19 6 0.38 0.85 0.94 1.8 0.94 0.98 0.77 0.68 0.0 0.64 402
3432 3432 23S 2 19 521   v4 A:U cWW       Strong 3 25 31 12 0.43 0.67 0.76 1.44 0.76 0.96 0.01 0.19 0.0 0.64 403
3439 3439 23S 2 20 520   v4 C:G cWW       Strong 3 28 29 17 0.6 0.9 0.94 1.84 0.94 0.98 0.11 0.18 0.0 0.64 403
3446 3446 23S 2 21 519   v4 A:U cWW       Strong 3 26 32 16 0.55 0.53 0.75 1.27 0.77 0.98 0.17 0.46 0.0 0.64 403
3453 3453 23S 2 22 518   v4 C:G cWW       Strong 3 17 20 8 0.43 0.68 0.87 1.55 0.87 0.99 0.81 1.0 0.0 0.64 402
3460 3460 23S 2 23 517   v4 G:C cWW       Strong 3 10 11 5 0.48 0.81 0.96 1.77 0.96 0.99 1.29 1.1 0.0 0.64 403
3467 3467 23S 2 24 516   v4 G:C cWW       Strong 3 9 16 6 0.48 0.86 0.96 1.82 0.96 0.99 1.06 0.89 0.0 0.64 402
3474 3474 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong 3 10 13 7 0.61 0.88 0.97 1.86 0.97 0.99 0.88 0.75 0.0 0.64 403
3481 3481 23S 3 31 474   v4 C:G cWW       Strong 3 6 9 4 0.53 0.96 0.98 1.94 0.98 0.99 0.46 0.16 0.02 0.63 401
3488 3488 23S 3 32 473   v4 C:G cWW       Strong 3 3 3 2 0.67 0.79 0.99 1.78 0.99 0.99 1.72 1.61 0.02 0.64 403
3495 3495 23S 4 35 445   v4 G:C cWW       Strong 3 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.9 1.97 0.01 0.63 402
3502 3502 23S 4 36 444   v4 G:C cWW       Strong 3 4 4 1 0.25 0.73 0.99 1.72 0.99 0.99 1.68 1.78 0.0 0.64 403
3509 3509 23S 4 37 442   v4 C:G cWW       Strong 3 13 12 5 0.4 0.55 0.95 1.5 0.95 1.0 1.32 1.53 0.0 0.64 401
3516 3516 23S 4 38 441   v4 A:U cWW       Strong 3 15 16 14 0.9 1.0 1.0 2.0 1.0 1.0 0.55 0.66 0.0 0.64 401
3523 3523 23S 4 39 440   v4 G:C cWW       Strong 3 19 24 14 0.65 0.99 0.99 1.98 0.99 1.0 0.34 0.47 0.0 0.64 401
3530 3530 23S 4 40 439   v4 U:A cWW       Strong 3 25 33 20 0.69 0.96 0.98 1.95 0.98 0.99 0.3 0.3 0.0 0.63 399
3537 3537 23S 4 41 438   v4 C:G cWW       Strong 3 29 35 23 0.72 1.0 1.0 1.99 1.0 1.0 0.09 0.09 0.0 0.63 401
3544 3544 23S 4 42 437   v4 A:U cWW       Strong 3 22 29 17 0.67 0.99 0.99 1.98 0.99 1.0 0.73 0.63 0.0 0.64 401
3551 3551 23S 4 43 436   v4 G:C cWW       Strong 3 21 27 17 0.71 0.87 0.92 1.79 0.92 0.93 -0.09 -0.07 0.01 0.59 402
3558 3558 23S 4 44 434   v4 A:U cWW       Strong 3 11 26 4 0.22 0.49 0.87 1.36 0.87 0.89 0.98 0.61 0.01 0.63 400
3565 3565 23S 4 45 433   v4 G:C cWW       Strong 3 10 21 6 0.39 0.33 0.8 1.13 0.78 0.82 0.76 0.52 0.03 0.62 401
3572 3572 23S 4.1 46 179   v4 G:C cWW       Strong 3 6 23 6 0.41 0.98 0.99 1.98 0.99 0.99 -0.28 0.28 0.17 0.47 402
3579 3579 23S 4.1 47 178   v4 C:G cWW       Strong 3 5 4 2 0.44 0.4 0.98 1.38 0.98 1.0 1.72 1.79 0.0 0.63 399
3586 3586 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant 3 2 2 0 0.0 0.0 0.0 0.0 0.02 0.02 1.9 1.86 0.0 0.64 405
3593 3593 23S 5 54 116   v4 G:C cWW       Strong 3 2 7 2 0.44 0.1 0.0 0.1 0.78 1.0 1.8 1.14 0.0 0.64 406
3600 3600 23S 5 55 115   v4 G:C cWW       Strong 3 7 4 2 0.36 0.95 0.99 1.93 0.99 1.0 1.2 1.16 0.0 0.64 405
3607 3607 23S 5 56 114   v4 A:U cWW       Strong 3 12 17 12 0.83 0.97 0.99 1.96 0.99 1.0 1.1 1.12 0.0 0.64 406
3614 3614 23S 6 57 70   v4 C:G cWW       Strong 3 2 1 1 0.67 0.97 1.0 1.97 1.0 1.0 1.56 1.53 0.0 0.64 406
3621 3621 23S 6 58 69   v4 G:C cWW       Strong 3 2 3 1 0.4 0.2 0.0 0.2 0.99 1.0 1.93 1.84 0.0 0.64 406
3628 3628 23S 6 59 68   v4 U:G cWW       Strong 3 14 9 5 0.43 0.14 0.0 0.14 0.59 1.0 0.68 1.06 0.0 0.65 408
3635 3635 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong 3 22 20 13 0.62 0.85 0.91 1.76 0.91 0.91 0.29 -0.76 0.19 0.46 407
3642 3642 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong 3 23 14 10 0.54 0.57 0.72 1.29 0.72 0.73 0.41 -0.73 0.19 0.47 410
3649 3649 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant 3 15 11 8 0.61 0.45 0.67 1.12 0.59 0.59 0.89 -0.72 0.19 0.47 411
3656 3656 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong 3 15 17 14 0.88 0.87 0.92 1.78 0.92 0.99 0.14 -0.78 0.19 0.47 411
3663 3663 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak 3 10 2 1 0.17 0.35 0.96 1.32 0.96 0.98 0.75 0.43 0.19 0.47 411
3670 3670 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong 3 17 20 6 0.32 0.34 0.74 1.08 0.74 0.82 0.84 0.45 0.0 0.64 411
3677 3677 23S 7 76 110   v4 C:G cWW       Strong 3 14 7 4 0.38 0.12 0.0 0.12 0.75 0.9 0.98 1.09 0.0 0.64 413
3684 3684 23S 7 77 109   v4 G:C cWW       Strong 3 25 24 19 0.78 0.71 0.84 1.55 0.81 0.82 -0.09 0.24 0.02 0.63 413
3691 3691 23S 7 78 108   v4 U:G cWW       Strong 3 34 34 18 0.53 0.35 0.54 0.89 0.63 0.95 -0.6 0.18 0.14 0.52 413
3698 3698 23S 7 79 107   v4 C:G cWW       Strong 3 32 24 16 0.57 0.54 0.76 1.3 0.76 0.8 0.04 0.35 0.01 0.64 413
3705 3705 23S 7 80 106   v4 G:C cWW       Strong 3 5 7 2 0.33 0.14 0.0 0.14 0.78 0.78 0.88 1.35 0.0 0.64 413
3712 3712 23S 7 81 105   v4 G:C cWW       Strong 3 12 7 4 0.42 0.74 0.98 1.72 0.98 0.99 1.04 0.19 0.17 0.47 412
3719 3719 23S 7 82 104   v4 U:A tSH       Strong 3 16 21 5 0.27 0.51 0.79 1.29 0.07 0.67 -0.04 -0.57 0.12 0.47 413
3726 3726 23S 7 85 97   v4 G:C cWW       Strong 3 5 6 5 0.91 0.58 0.98 1.57 0.98 1.0 0.42 0.35 0.0 0.47 413
3733 3733 23S 7 86 96   v4 G:C cWW       Strong 3 24 24 22 0.92 0.89 0.96 1.85 0.96 1.0 -0.41 -0.33 0.0 0.47 413
3740 3740 23S 7 87 95   v4 U:A cWW       Strong 3 18 22 16 0.8 0.88 0.96 1.84 0.96 0.97 -0.33 -0.37 0.0 0.47 413
3747 3747 23S 8 121 130   v4 G:C cWW       Strong 3 4 8 3 0.5 0.07 0.0 0.07 0.9 0.98 1.56 1.21 0.01 0.64 420
3754 3754 23S 8 122 129   v4 G:C cWW       Strong 3 5 3 3 0.75 0.96 0.99 1.94 0.99 1.0 0.65 0.67 0.0 0.64 421
3761 3761 23S 8 123 128   v4 G:C cWW       Strong 3 2 2 2 1.0 0.8 0.99 1.79 0.99 1.0 0.41 0.39 0.0 0.48 420
3768 3768 23S 9 131 148   v4 A:U cWW       Strong 3 18 19 16 0.86 0.94 0.97 1.92 0.97 1.0 0.35 0.46 0.02 0.61 424
3775 3775 23S 9 132 147   v4 G:C cWW       Strong 3 27 27 20 0.74 0.69 0.83 1.52 0.83 1.0 0.0 0.04 0.02 0.61 424
3782 3782 23S 9 133 146   v4 U:A cWW       Strong 3 30 29 27 0.92 0.87 0.93 1.8 0.93 0.94 0.11 0.27 0.0 0.62 425
3789 3789 23S 9 134 145   v4 G:C cWW       Strong 3 35 36 34 0.96 0.86 0.91 1.77 0.91 0.95 -0.32 -0.33 0.01 0.61 426
3796 3796 23S 9 135 144   v4 U:A cWW       Strong 3 29 38 27 0.81 0.87 0.91 1.78 0.91 0.94 -0.32 -0.39 0.01 0.6 425
3803 3803 23S 9 136 143   v4 G:C cWW       Strong 3 21 19 16 0.8 0.81 0.87 1.67 0.87 0.91 -0.71 -0.78 0.01 0.51 426
3810 3810 23S 9 137 142   v4 U:A cWW       Strong 3 22 25 18 0.77 0.67 0.74 1.41 0.74 0.89 -0.8 -0.8 0.02 0.48 426
3817 3817 23S 10 150 176   v4 U:A cWW       Strong 3 21 24 19 0.84 0.96 0.98 1.95 0.98 0.99 0.67 0.64 0.0 0.65 426
3824 3824 23S 10 151 175   v4 C:G cWW       Strong 3 29 31 25 0.83 0.84 0.91 1.75 0.91 0.98 0.09 -0.03 0.0 0.65 426
3831 3831 23S 10 152 174   v4 A:U cWW       Strong 3 37 40 26 0.68 0.68 0.82 1.5 0.82 0.93 -0.06 0.14 0.0 0.65 426
3838 3838 23S 10 153 173   v4 U:A cWW       Strong 3 31 34 27 0.83 0.88 0.93 1.81 0.93 0.97 -0.2 -0.12 0.0 0.63 426
3845 3845 23S 10 154 172   v4 U:A cWW       Strong 3 32 32 26 0.81 0.87 0.93 1.8 0.93 0.98 -0.17 -0.12 0.0 0.62 426
3852 3852 23S 10 155 171   v4 A:U cWW       Strong 3 38 39 28 0.73 0.89 0.93 1.82 0.93 0.98 -0.48 -0.44 0.0 0.59 426
3859 3859 23S 10 156 170   v4 A:U cWW       Strong 3 36 40 24 0.63 0.81 0.86 1.67 0.86 0.96 -0.52 -0.53 0.0 0.58 426
3866 3866 23S 10 157 169   v4 C:G cWW       Strong 3 23 25 17 0.71 0.74 0.89 1.63 0.89 0.98 -0.28 -0.1 0.01 0.56 426
3873 3873 23S 10 158 168   v4 U:G cWW       Weak 3 11 10 5 0.48 0.06 0.0 0.06 0.29 0.97 0.62 0.08 0.0 0.56 426
3880 3880 23S 11 183 214   v4 C:G cWW       Strong 3 3 2 2 0.8 0.75 0.99 1.74 0.99 0.99 1.78 1.79 0.0 0.77 484
3887 3887 23S 11 184 212   v4 C:G cWW       Strong 3 17 19 15 0.83 0.87 0.97 1.84 0.97 1.0 1.13 1.07 0.0 0.77 484
3894 3894 23S 11 185 211   v4 G:C cWW       Strong 3 27 26 23 0.87 0.95 0.98 1.93 0.98 1.0 0.68 0.7 0.0 0.77 485
3901 3901 23S 11 186 210   v4 G:C cWW       Strong 3 24 26 21 0.84 0.91 0.97 1.89 0.97 1.0 0.81 0.77 0.0 0.77 485
3908 3908 23S 11 187 209   v4 G:C cWW       Strong 3 7 5 4 0.67 0.98 0.99 1.98 0.99 1.0 0.77 0.79 0.0 0.77 483
3915 3915 23S 11 188 208   v4 G:C cWW       Strong 3 27 19 7 0.3 0.65 0.8 1.45 0.8 0.88 0.32 0.46 0.0 0.77 486
3922 3922 23S 11 194 201   v4 G:C cWW       Strong 3 2 1 2 1.0 1.0 1.0 2.0 1.0 1.0 1.0 0.99 0.0 0.77 486
3929 3929 23S 11 195 200   v4 A:U tSH       Strong 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 1.98 0.0 0.77 486
3936 3936 23S 12 224 231   v4 U:A cWW       Strong 3 19 20 17 0.87 1.0 1.0 2.0 1.0 1.0 0.1 0.1 0.0 0.81 511
3943 3943 23S 12 225 230   v4 C:G cWW       Strong 3 13 17 13 0.87 0.96 0.99 1.95 0.99 0.99 0.74 0.73 0.0 0.81 509
3950 3950 23S 12.1 234 430   v4 U:A tWW       Strong 3 7 7 5 0.71 0.69 0.98 1.66 0.98 0.99 1.59 1.68 0.01 0.81 512
3957 3957 23S 13 235 262   v4 U:A cWW       Strong 3 9 13 8 0.73 0.72 0.97 1.7 0.97 1.0 1.4 1.41 0.01 0.8 509
3964 3964 23S 13 236 261   v4 C:G cWW       Strong 3 19 19 14 0.74 0.94 0.99 1.92 0.99 0.99 1.03 0.87 0.01 0.8 511
3971 3971 23S 13 237 260   v4 C:G cWW       Strong 3 7 4 1 0.18 0.26 0.95 1.21 0.95 1.0 1.66 1.72 0.01 0.8 510
3978 3978 23S 13 238 259   v4 C:G cWW       Strong 3 19 20 19 0.97 0.93 0.98 1.91 0.98 1.0 0.97 0.83 0.01 0.81 513
3985 3985 23S 13 239 258   v4 C:G cWW       Significant 3 52 42 18 0.38 0.22 0.47 0.69 0.37 0.7 0.71 0.13 0.0 0.81 512
3992 3992 23S 13 245 253   v4 G:C cWW       Strong 3 10 10 4 0.4 0.63 0.86 1.49 0.86 0.91 1.06 1.1 0.0 0.82 514
3999 3999 23S 13 246 252   v4 C:G cWW       Strong 3 20 15 13 0.74 0.34 0.81 1.15 0.81 1.0 0.83 1.34 0.0 0.81 514
4006 4006 23S 14 265 427   v4 A:U tSS       Strong 3 6 2 0 0.0 0.07 0.0 0.07 0.97 0.98 1.81 1.89 0.0 0.82 515
4013 4013 23S 14 266 426   v4 G:C cWW       Strong 3 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.7 1.7 0.0 0.82 514
4020 4020 23S 14 267 425   v4 C:G cWW       Strong 3 16 15 13 0.84 0.97 0.99 1.96 0.99 1.0 0.92 0.96 0.0 0.82 514
4027 4027 23S 14 268 424   v4 C:G cWW       Strong 3 15 17 13 0.81 0.89 0.97 1.87 0.97 1.0 1.02 1.07 0.0 0.82 515
4034 4034 23S 16 271 366   v4 G:C cWW       Strong 3 26 12 8 0.42 0.47 0.59 1.06 0.59 0.7 -0.94 -0.91 0.2 0.23 518
4041 4041 23S 16 272 365   v4 A:U cWW       Strong 3 32 16 7 0.29 0.33 0.48 0.81 0.48 0.58 -0.95 -0.88 0.2 0.24 517

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");