Base-pair collective (covariation) scores

133 rows where conformation = "No BP" and molecule = "23S" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, tertiary_type, Xch, Ych, PE, Cov3, DfDel

group_code 7

  • 3 19
  • A 19
  • B 19
  • C 19
  • E 19
  • M 19
  • T 19

strength 5

molecule 1

  • 23S · 133 ✖

conformation 1

  • No BP · 133 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
4824 4824 23S 33 687 775   v4 C:G No BP       Weak T 11 7 0 0.0 0.29 0.97 1.27 0.97 0.98 1.72 1.8 0.0 0.84 886
4825 4825 23S 33 687 775   v4 C:G No BP       Weak 3 2 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.83 524
4826 4826 23S 33 687 775   v4 C:G No BP       Weak B 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.93 0.0 0.86 282
4827 4827 23S 33 687 775   v4 C:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
4828 4828 23S 33 687 775   v4 C:G No BP       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.95 0.95 1.86 1.81 0.0 0.97 100
4829 4829 23S 33 687 775   v4 C:G No BP       Weak E 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 1.95 0.0 0.78 205
4830 4830 23S 33 687 775   v4 C:G No BP       Weak M 8 4 0 0.0 0.4 0.94 1.34 0.94 0.98 1.34 1.62 0.01 0.83 262
4831 4831 23S 33 688 774   v4 U:G No BP       Significant T 4 14 3 0.33 0.17 0.0 0.17 0.93 0.96 1.84 1.42 0.0 0.85 886
4832 4832 23S 33 688 774   v4 U:G No BP       Significant 3 0 7 0 0.0 0.0 0.0 0.0 0.9 0.95 2.0 1.4 0.0 0.83 524
4833 4833 23S 33 688 774   v4 U:G No BP       Significant B 0 4 0 0.0 0.0 0.0 0.0 0.89 0.98 2.0 1.41 0.0 0.86 282
4834 4834 23S 33 688 774   v4 U:G No BP       Significant A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
4835 4835 23S 33 688 774   v4 U:G No BP       Significant C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
4836 4836 23S 33 688 774   v4 U:G No BP       Significant E 0 3 0 0.0 0.0 0.0 0.0 0.89 0.9 2.0 1.42 0.0 0.78 205
4837 4837 23S 33 688 774   v4 U:G No BP       Significant M 4 7 3 0.55 0.54 0.96 1.5 0.96 0.98 1.56 1.41 0.01 0.83 262
4929 4929 23S 34 703 729   v4 U:G No BP       Weak T 40 4 1 0.04 0.02 0.0 0.02 0.17 0.93 0.55 1.49 0.01 0.79 887
4930 4930 23S 34 703 729   v4 U:G No BP       Weak 3 20 0 0 0.0 0.01 0.0 0.01 0.23 1.0 1.23 1.98 0.0 0.83 524
4931 4931 23S 34 703 729   v4 U:G No BP       Weak B 1 0 0 0.0 0.0 0.0 0.0 0.02 1.0 1.87 2.0 0.0 0.86 282
4932 4932 23S 34 703 729   v4 U:G No BP       Weak A 3 0 0 0.0 0.0 0.0 0.0 0.32 1.0 1.09 2.0 0.0 0.9 37
4933 4933 23S 34 703 729   v4 U:G No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.97 100
4934 4934 23S 34 703 729   v4 U:G No BP       Weak E 16 0 0 0.0 0.01 0.0 0.01 0.49 0.99 1.0 1.96 0.0 0.78 205
4935 4935 23S 34 703 729   v4 U:G No BP       Weak M 20 4 1 0.08 0.04 0.0 0.04 0.09 0.73 -0.3 0.73 0.04 0.64 263
6434 6434 23S 55 1420 1578   v4 A:U No BP       Strong T 29 38 14 0.42 0.5 0.71 1.2 0.53 0.55 -0.83 -0.73 0.1 0.44 860
6435 6435 23S 55 1420 1578   v4 A:U No BP       Strong 3 26 22 11 0.46 0.53 0.74 1.27 0.52 0.53 -0.18 -0.05 0.02 0.69 484
6436 6436 23S 55 1420 1578   v4 A:U No BP       Strong B 13 7 0 0.0 0.09 0.0 0.09 0.13 0.14 0.55 1.05 0.03 0.72 264
6437 6437 23S 55 1420 1578   v4 A:U No BP       Strong A 3 3 3 1.0 0.8 0.9 1.7 0.9 1.0 -0.02 -0.04 0.0 0.76 41
6438 6438 23S 55 1420 1578   v4 A:U No BP       Strong C 1 14 1 0.13 0.33 0.5 0.83 0.5 0.67 -0.5 0.6 0.85 0.12 100
6439 6439 23S 55 1420 1578   v4 A:U No BP       Strong E 10 12 8 0.73 0.95 0.98 1.93 0.98 0.98 0.11 0.15 0.01 0.65 179
6440 6440 23S 55 1420 1578   v4 A:U No BP       Strong M 2 2 2 1.0 0.88 0.93 1.8 0.93 0.93 -0.29 -0.31 0.0 0.04 276
6742 6742 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong T 29 16 12 0.53 0.53 0.69 1.21 0.44 0.58 -0.71 -0.76 0.0 0.49 861
6743 6743 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong 3 15 10 6 0.48 0.59 0.75 1.34 0.45 0.6 0.12 -0.1 0.0 0.69 485
6744 6744 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong B 9 3 1 0.17 0.51 0.85 1.36 0.26 0.29 0.36 0.4 0.0 0.73 264
6745 6745 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong A 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 0.57 0.56 0.07 0.73 41
6746 6746 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong C 14 6 6 0.6 0.32 0.54 0.86 0.35 0.41 -0.63 -0.43 0.05 0.72 100
6747 6747 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong E 6 6 5 0.83 0.82 0.95 1.77 0.82 0.99 0.46 0.57 0.01 0.63 180
6748 6748 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong M 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.03 -0.06 0.0 0.0 276
7225 7225 23S 66 1799 1820   v4 G:U No BP       Weak T 3 10 1 0.15 0.01 0.0 0.01 0.24 0.99 1.63 0.93 0.0 0.78 842
7226 7226 23S 66 1799 1820   v4 G:U No BP       Weak 3 0 4 0 0.0 0.01 0.0 0.01 0.41 1.0 1.83 0.9 0.0 0.72 458
7227 7227 23S 66 1799 1820   v4 G:U No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.8 262
7228 7228 23S 66 1799 1820   v4 G:U No BP       Weak A 0 2 0 0.0 0.0 0.0 0.0 0.9 1.0 2.0 1.54 0.0 1.0 41
7229 7229 23S 66 1799 1820   v4 G:U No BP       Weak C 0 3 0 0.0 0.0 0.0 0.0 0.01 0.97 2.0 1.73 0.0 0.98 101
7230 7230 23S 66 1799 1820   v4 G:U No BP       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.78 0.0 0.58 155
7231 7231 23S 66 1799 1820   v4 G:U No BP       Weak M 3 3 1 0.33 0.12 0.0 0.12 0.03 1.0 1.27 1.37 0.0 0.83 283
7498 7498 23S 69 1911 1919   v4 U:A No BP       Weak T 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.86 0.0 0.8 852
7499 7499 23S 69 1911 1919   v4 U:A No BP       Weak 3 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.9 1.98 0.0 0.7 440
7500 7500 23S 69 1911 1919   v4 U:A No BP       Weak B 2 0 0 0.0 0.0 0.0 0.0 0.98 0.98 1.83 1.95 0.0 0.74 244
7501 7501 23S 69 1911 1919   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7502 7502 23S 69 1911 1919   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7503 7503 23S 69 1911 1919   v4 U:A No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.59 155
7504 7504 23S 69 1911 1919   v4 U:A No BP       Weak M 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.71 1.71 0.0 0.96 311
7512 7512 23S 71 1935 1962   v4 G:C No BP       Strong T 21 23 8 0.36 0.77 0.89 1.65 0.89 0.95 0.55 0.52 0.0 0.81 847
7513 7513 23S 71 1935 1962   v4 G:C No BP       Strong 3 4 3 2 0.57 0.93 0.97 1.89 0.97 1.0 0.97 0.88 0.0 0.69 436
7514 7514 23S 71 1935 1962   v4 G:C No BP       Strong B 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.96 1.91 0.0 0.74 240
7515 7515 23S 71 1935 1962   v4 G:C No BP       Strong A 1 1 0 0.0 0.55 0.78 1.33 0.73 1.0 1.0 0.52 0.0 1.0 41
7516 7516 23S 71 1935 1962   v4 G:C No BP       Strong C 1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.86 1.92 0.0 0.98 101
7517 7517 23S 71 1935 1962   v4 G:C No BP       Strong E 2 1 1 0.67 0.5 0.99 1.49 0.99 0.99 1.89 1.94 0.0 0.59 155
7518 7518 23S 71 1935 1962   v4 G:C No BP       Strong M 16 19 6 0.34 0.54 0.74 1.28 0.74 0.86 0.91 0.73 0.0 0.99 310
7757 7757 23S 74 2075 2434   v4 U:A No BP       Weak T 4 8 3 0.5 0.05 0.0 0.05 0.98 0.98 1.94 1.83 0.0 0.81 845
7758 7758 23S 74 2075 2434   v4 U:A No BP       Weak 3 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.69 437
7759 7759 23S 74 2075 2434   v4 U:A No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
7760 7760 23S 74 2075 2434   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7761 7761 23S 74 2075 2434   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96 99
7762 7762 23S 74 2075 2434   v4 U:A No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.86 0.0 0.59 155
7763 7763 23S 74 2075 2434   v4 U:A No BP       Weak M 4 7 3 0.55 0.06 0.0 0.06 0.95 0.96 1.85 1.67 0.0 0.99 309
7967 7967 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong T 14 10 9 0.75 0.72 0.94 1.66 0.04 0.04 -0.13 -0.1 0.0 0.55 847
7968 7968 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong 3 8 8 7 0.88 0.86 0.97 1.83 0.02 0.03 1.24 1.07 0.0 0.69 437
7969 7969 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong B 2 2 2 1.0 1.0 1.0 2.0 0.0 0.0 1.07 1.07 0.0 0.74 241
7970 7970 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong A 3 3 3 1.0 0.71 0.95 1.67 0.05 0.05 1.34 1.19 0.0 1.0 41
7971 7971 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong C 1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.81 2.0 0.0 0.98 101
7972 7972 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong E 3 3 2 0.67 0.58 0.97 1.55 0.05 0.08 1.74 1.57 0.0 0.59 155
7973 7973 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong M 5 2 2 0.57 0.24 0.54 0.78 0.24 0.24 -0.54 -0.42 0.0 0.13 309
7974 7974 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong T 15 14 8 0.55 0.86 0.94 1.79 0.94 0.95 -0.3 -0.21 0.0 0.55 847
7975 7975 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong 3 11 10 7 0.67 0.83 0.94 1.77 0.94 0.95 0.98 1.11 0.0 0.69 437
7976 7976 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong B 7 5 5 0.83 0.91 0.96 1.87 0.96 0.96 0.86 1.02 0.0 0.74 241
7977 7977 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong A 2 1 0 0.0 0.57 0.78 1.35 0.78 0.78 0.77 1.13 0.0 1.0 41
7978 7978 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong C 1 2 1 0.67 0.75 0.99 1.74 0.99 0.99 1.81 1.76 0.0 0.98 101
7979 7979 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong E 2 4 2 0.67 0.54 0.96 1.5 0.96 0.99 1.68 1.57 0.0 0.59 155
7980 7980 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong M 3 2 0 0.0 0.21 0.71 0.93 0.71 0.84 -0.42 -0.42 0.01 0.12 309
7981 7981 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong T 14 15 9 0.62 0.72 0.92 1.64 0.92 0.93 -0.37 -0.3 0.0 0.55 847
7982 7982 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong 3 5 4 2 0.44 0.86 0.98 1.84 0.98 0.98 1.44 1.45 0.0 0.69 437
7983 7983 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
7984 7984 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.4 1.4 0.0 1.0 41
7985 7985 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong C 5 4 4 0.89 0.64 0.87 1.51 0.78 0.79 0.6 0.95 0.0 0.98 101
7986 7986 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong E 4 3 1 0.29 0.29 0.94 1.22 0.94 0.94 1.48 1.56 0.0 0.59 155
7987 7987 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong M 4 7 3 0.55 0.42 0.66 1.07 0.66 0.68 -0.47 -0.54 0.0 0.13 309
8191 8191 23S 80 2249 2255   v4 U:G No BP       Weak T 2 10 1 0.17 0.11 0.0 0.11 0.04 0.99 1.91 1.68 0.0 0.81 845
8192 8192 23S 80 2249 2255   v4 U:G No BP       Weak 3 1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.94 1.97 0.0 0.69 434
8193 8193 23S 80 2249 2255   v4 U:G No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.95 0.0 0.73 238
8194 8194 23S 80 2249 2255   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41
8195 8195 23S 80 2249 2255   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.02 1.0 2.0 1.86 0.0 0.99 102
8196 8196 23S 80 2249 2255   v4 U:G No BP       Weak E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.98 1.86 2.0 0.0 0.59 155
8197 8197 23S 80 2249 2255   v4 U:G No BP       Weak M 1 8 1 0.22 0.12 0.0 0.12 0.11 0.98 1.88 1.4 0.0 0.99 309
8310 8310 23S 84 2296 2322   v4 U:A No BP       Strong T 5 11 3 0.38 0.1 0.0 0.1 0.94 0.94 0.34 0.19 0.0 0.55 848
8311 8311 23S 84 2296 2322   v4 U:A No BP       Strong 3 1 5 0 0.0 0.03 0.0 0.03 0.93 0.93 1.88 1.64 0.0 0.69 437
8312 8312 23S 84 2296 2322   v4 U:A No BP       Strong B 0 3 0 0.0 0.0 0.0 0.0 0.97 0.97 1.95 1.76 0.0 0.74 241
8313 8313 23S 84 2296 2322   v4 U:A No BP       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
8314 8314 23S 84 2296 2322   v4 U:A No BP       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.9 1.9 0.0 0.98 102
8315 8315 23S 84 2296 2322   v4 U:A No BP       Strong E 1 2 0 0.0 0.04 0.0 0.04 0.85 0.85 1.72 1.45 0.0 0.59 155
8316 8316 23S 84 2296 2322   v4 U:A No BP       Strong M 4 6 3 0.6 0.4 0.85 1.25 0.85 0.9 -0.4 -0.46 0.01 0.13 309
8681 8681 23S 90 2511 2577   v4 U:A No BP       No Support T 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.93 2.0 0.0 0.74 778
8682 8682 23S 90 2511 2577   v4 U:A No BP       No Support 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.66 417

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");