Base-pair collective (covariation) scores

31 rows where conformation = "No BP" and group_code = "T" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

strength 5

molecule 2

group_code 1

conformation 1

  • No BP · 31 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
29 29 16S 1 13 21   v4 U:G No BP       Weak T 14 68 3 0.07 0.02 0.0 0.02 0.09 0.98 1.8 1.5 0.0 0.46 3890
911 911 16S 15 375 388   v4 U:G No BP       Weak T 10 30 4 0.2 0.05 0.0 0.05 0.01 0.99 1.94 1.68 0.02 0.8 6852
1296 1296 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong T 95 111 26 0.25 0.26 0.66 0.92 0.16 0.7 0.79 0.52 0.03 0.79 6988
1443 1443 16S 21 606 632   v4 G:U No BP       Weak T 89 148 18 0.15 0.15 0.0 0.15 0.09 0.78 -0.06 -0.3 0.01 0.61 7251
4824 4824 23S 33 687 775   v4 C:G No BP       Weak T 11 7 0 0.0 0.29 0.97 1.27 0.97 0.98 1.72 1.8 0.0 0.84 886
4831 4831 23S 33 688 774   v4 U:G No BP       Significant T 4 14 3 0.33 0.17 0.0 0.17 0.93 0.96 1.84 1.42 0.0 0.85 886
4929 4929 23S 34 703 729   v4 U:G No BP       Weak T 40 4 1 0.04 0.02 0.0 0.02 0.17 0.93 0.55 1.49 0.01 0.79 887
2129 2129 16S 30 944 1237   v4 G:C No BP       No Support T 3 4 0 0.0 0.04 0.0 0.04 1.0 1.0 1.95 1.97 0.0 0.78 6633
2213 2213 16S 31 960 975   v4 U:A No BP       Weak T 10 32 1 0.05 0.39 0.77 1.16 0.77 0.99 1.35 0.64 0.0 0.81 6871
2220 2220 16S 31 961 974   v4 U:A No BP       Weak T 48 99 4 0.05 0.07 0.0 0.07 0.67 0.84 1.73 0.59 0.0 0.8 6856
2458 2458 16S 34 1053 1205   v4 G:U No BP       Weak T 7 20 0 0.0 0.01 0.0 0.01 0.18 1.0 1.35 1.79 0.0 0.81 6891
2521 2521 16S 34 1064 1192   v4 G:C No BP       Strong T 53 71 16 0.26 0.58 0.89 1.47 0.76 0.78 0.99 1.0 0.0 0.81 6914
2731 2731 16S 40 1158 1178   v4 C:G No BP       Weak T 12 156 4 0.05 0.13 0.0 0.13 0.96 0.97 0.97 1.02 0.12 0.71 7138
2738 2738 16S 40 1159 1177   v4 U:G No BP       Weak T 80 167 11 0.09 0.16 0.0 0.16 0.07 0.94 0.49 1.0 0.12 0.71 7135
6434 6434 23S 55 1420 1578   v4 A:U No BP       Strong T 29 38 14 0.42 0.5 0.71 1.2 0.53 0.55 -0.83 -0.73 0.1 0.44 860
3277 3277 16S 45 1506 1529   v4 U:G No BP       Weak T 7 19 0 0.0 0.01 0.0 0.01 0.05 0.99 1.9 1.58 0.0 0.26 2260
6742 6742 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong T 29 16 12 0.53 0.53 0.69 1.21 0.44 0.58 -0.71 -0.76 0.0 0.49 861
7225 7225 23S 66 1799 1820   v4 G:U No BP       Weak T 3 10 1 0.15 0.01 0.0 0.01 0.24 0.99 1.63 0.93 0.0 0.78 842
7498 7498 23S 69 1911 1919   v4 U:A No BP       Weak T 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.86 0.0 0.8 852
7512 7512 23S 71 1935 1962   v4 G:C No BP       Strong T 21 23 8 0.36 0.77 0.89 1.65 0.89 0.95 0.55 0.52 0.0 0.81 847
7757 7757 23S 74 2075 2434   v4 U:A No BP       Weak T 4 8 3 0.5 0.05 0.0 0.05 0.98 0.98 1.94 1.83 0.0 0.81 845
7967 7967 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong T 14 10 9 0.75 0.72 0.94 1.66 0.04 0.04 -0.13 -0.1 0.0 0.55 847
7974 7974 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong T 15 14 8 0.55 0.86 0.94 1.79 0.94 0.95 -0.3 -0.21 0.0 0.55 847
7981 7981 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong T 14 15 9 0.62 0.72 0.92 1.64 0.92 0.93 -0.37 -0.3 0.0 0.55 847
8191 8191 23S 80 2249 2255   v4 U:G No BP       Weak T 2 10 1 0.17 0.11 0.0 0.11 0.04 0.99 1.91 1.68 0.0 0.81 845
8310 8310 23S 84 2296 2322   v4 U:A No BP       Strong T 5 11 3 0.38 0.1 0.0 0.1 0.94 0.94 0.34 0.19 0.0 0.55 848
8681 8681 23S 90 2511 2577   v4 U:A No BP       No Support T 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.93 2.0 0.0 0.74 778
8926 8926 23S 94 2637 2781   v4 U:A No BP       Strong T 15 23 9 0.47 0.71 0.92 1.63 0.92 0.93 -0.24 -0.19 0.04 0.46 662
9241 9241 23S 98 2796 2800   v4 U:A No BP       Strong T 7 7 3 0.43 0.67 0.83 1.5 0.83 0.88 -0.39 -0.38 0.0 0.06 693
9248 9248 23S 99 2808 2891   v4 G:U No BP   3°: base pair   ??? T 21 18 3 0.15 0.34 0.69 1.03 0.67 0.86 -0.74 -0.05 0.23 0.3 421
9395 9395 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong T 22 18 8 0.4 0.75 0.9 1.65 0.01 0.07 0.7 0.45 0.02 0.4 447

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");