Base-pair collective (covariation) scores

31 rows where conformation = "No BP" and group_code = "C" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

strength 5

molecule 2

group_code 1

conformation 1

  • No BP · 31 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
33 33 16S 1 13 21   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.95 2.0 1.66 0.0 0.69 126
915 915 16S 15 375 388   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 164
1300 1300 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong C 8 17 4 0.32 0.12 0.0 0.12 0.05 0.79 1.55 0.98 0.0 0.9 164
1447 1447 16S 21 606 632   v4 G:U No BP       Weak C 15 15 5 0.33 0.58 0.77 1.35 0.77 0.91 0.52 0.46 0.0 0.93 170
4828 4828 23S 33 687 775   v4 C:G No BP       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.95 0.95 1.86 1.81 0.0 0.97 100
4835 4835 23S 33 688 774   v4 U:G No BP       Significant C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
4933 4933 23S 34 703 729   v4 U:G No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.97 100
2133 2133 16S 30 944 1237   v4 G:C No BP       No Support C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 160
2217 2217 16S 31 960 975   v4 U:A No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.8 0.0 0.89 162
2224 2224 16S 31 961 974   v4 U:A No BP       Weak C 1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.83 1.95 0.0 0.9 163
2462 2462 16S 34 1053 1205   v4 G:U No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 163
2525 2525 16S 34 1064 1192   v4 G:C No BP       Strong C 1 8 1 0.22 0.06 0.0 0.06 0.9 0.96 1.95 1.4 0.0 0.9 163
2735 2735 16S 40 1158 1178   v4 C:G No BP       Weak C 0 2 0 0.0 0.11 0.0 0.11 0.95 0.98 1.38 1.71 0.03 0.89 167
2742 2742 16S 40 1159 1177   v4 U:G No BP       Weak C 7 3 2 0.4 0.17 0.0 0.17 0.04 0.97 1.39 1.74 0.02 0.9 167
6438 6438 23S 55 1420 1578   v4 A:U No BP       Strong C 1 14 1 0.13 0.33 0.5 0.83 0.5 0.67 -0.5 0.6 0.85 0.12 100
3281 3281 16S 45 1506 1529   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 108
6746 6746 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong C 14 6 6 0.6 0.32 0.54 0.86 0.35 0.41 -0.63 -0.43 0.05 0.72 100
7229 7229 23S 66 1799 1820   v4 G:U No BP       Weak C 0 3 0 0.0 0.0 0.0 0.0 0.01 0.97 2.0 1.73 0.0 0.98 101
7502 7502 23S 69 1911 1919   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7516 7516 23S 71 1935 1962   v4 G:C No BP       Strong C 1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.86 1.92 0.0 0.98 101
7761 7761 23S 74 2075 2434   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96 99
7971 7971 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong C 1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.81 2.0 0.0 0.98 101
7978 7978 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong C 1 2 1 0.67 0.75 0.99 1.74 0.99 0.99 1.81 1.76 0.0 0.98 101
7985 7985 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong C 5 4 4 0.89 0.64 0.87 1.51 0.78 0.79 0.6 0.95 0.0 0.98 101
8195 8195 23S 80 2249 2255   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.02 1.0 2.0 1.86 0.0 0.99 102
8314 8314 23S 84 2296 2322   v4 U:A No BP       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.9 1.9 0.0 0.98 102
8685 8685 23S 90 2511 2577   v4 U:A No BP       No Support C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.95 98
8930 8930 23S 94 2637 2781   v4 U:A No BP       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.54 56
9245 9245 23S 98 2796 2800   v4 U:A No BP       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.11 -0.11 0.0 0.02 90
9252 9252 23S 99 2808 2891   v4 G:U No BP   3°: base pair   ??? C 4 1 1 0.4 0.75 0.94 1.69 0.9 0.94 0.85 0.33 0.04 0.48 52
9399 9399 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong C 2 3 1 0.4 0.62 0.88 1.5 0.0 0.12 1.24 1.12 0.0 0.48 50

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");