Base-pair collective (covariation) scores

31 rows where conformation = "No BP" and group_code = "A" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

strength 5

molecule 2

group_code 1

conformation 1

  • No BP · 31 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
32 32 16S 1 13 21   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.58 154
914 914 16S 15 375 388   v4 U:G No BP       Weak A 0 3 0 0.0 0.0 0.0 0.0 0.02 1.0 1.81 1.85 0.02 0.84 228
1299 1299 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong A 0 4 0 0.0 0.0 0.0 0.0 0.02 0.97 2.0 1.52 0.0 0.82 217
1446 1446 16S 21 606 632   v4 G:U No BP       Weak A 3 14 0 0.0 0.08 0.0 0.08 0.07 0.59 0.86 1.0 0.01 0.87 232
4827 4827 23S 33 687 775   v4 C:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
4834 4834 23S 33 688 774   v4 U:G No BP       Significant A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
4932 4932 23S 34 703 729   v4 U:G No BP       Weak A 3 0 0 0.0 0.0 0.0 0.0 0.32 1.0 1.09 2.0 0.0 0.9 37
2132 2132 16S 30 944 1237   v4 G:C No BP       No Support A 0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 2.0 0.0 0.72 191
2216 2216 16S 31 960 975   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.79 208
2223 2223 16S 31 961 974   v4 U:A No BP       Weak A 3 2 0 0.0 0.0 0.0 0.0 0.07 0.85 1.79 1.22 0.0 0.79 209
2461 2461 16S 34 1053 1205   v4 G:U No BP       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.92 0.0 0.75 197
2524 2524 16S 34 1064 1192   v4 G:C No BP       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.75 198
2734 2734 16S 40 1158 1178   v4 C:G No BP       Weak A 1 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 2.0 0.0 0.74 195
2741 2741 16S 40 1159 1177   v4 U:G No BP       Weak A 7 1 0 0.0 0.01 0.0 0.01 0.53 0.99 1.0 1.92 0.0 0.75 198
6437 6437 23S 55 1420 1578   v4 A:U No BP       Strong A 3 3 3 1.0 0.8 0.9 1.7 0.9 1.0 -0.02 -0.04 0.0 0.76 41
3280 3280 16S 45 1506 1529   v4 U:G No BP       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.0 0.95 2.0 1.71 0.0 0.3 80
6745 6745 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong A 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 0.57 0.56 0.07 0.73 41
7228 7228 23S 66 1799 1820   v4 G:U No BP       Weak A 0 2 0 0.0 0.0 0.0 0.0 0.9 1.0 2.0 1.54 0.0 1.0 41
7501 7501 23S 69 1911 1919   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7515 7515 23S 71 1935 1962   v4 G:C No BP       Strong A 1 1 0 0.0 0.55 0.78 1.33 0.73 1.0 1.0 0.52 0.0 1.0 41
7760 7760 23S 74 2075 2434   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7970 7970 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong A 3 3 3 1.0 0.71 0.95 1.67 0.05 0.05 1.34 1.19 0.0 1.0 41
7977 7977 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong A 2 1 0 0.0 0.57 0.78 1.35 0.78 0.78 0.77 1.13 0.0 1.0 41
7984 7984 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.4 1.4 0.0 1.0 41
8194 8194 23S 80 2249 2255   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41
8313 8313 23S 84 2296 2322   v4 U:A No BP       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
8684 8684 23S 90 2511 2577   v4 U:A No BP       No Support A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
8929 8929 23S 94 2637 2781   v4 U:A No BP       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
9244 9244 23S 98 2796 2800   v4 U:A No BP       Strong A 2 2 2 1.0 0.8 0.94 1.74 0.88 1.0 -0.69 -0.63 0.0 0.41 40
9251 9251 23S 99 2808 2891   v4 G:U No BP   3°: base pair   ??? A 5 1 1 0.33 0.27 0.68 0.95 0.2 0.2 0.43 -0.11 0.32 0.61 38
9398 9398 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong A 0 1 0 0.0 0.0 0.0 0.0 0.03 0.14 2.0 0.8 0.07 0.85 38

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");