RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

134 rows where domain_label = "Eukarya" and rna_group = "5S" sorted by organism

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rna_group 1

  • 5S · 134 ✖

domain_label 1

  • Eukarya · 134 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.5.e.A.aquaticus 5S d 5 e Eukarya   A.aquaticus 5S/e/A.aquaticus no https://staging.crw2.org/data/5S/e/A.aquaticus/d.5.e.A.aquaticus.pdf https://staging.crw2.org/data/5S/e/A.aquaticus/d.5.e.A.aquaticus.bpseq.txt https://staging.crw2.org/data/5S/e/A.aquaticus/d.5.e.A.aquaticus.ss.txt
d.5.e.A.aurita.1 5S d 5 e Eukarya   A.aurita.1 5S/e/A.aurita.1 no https://staging.crw2.org/data/5S/e/A.aurita.1/d.5.e.A.aurita.1.pdf https://staging.crw2.org/data/5S/e/A.aurita.1/d.5.e.A.aurita.1.bpseq.txt https://staging.crw2.org/data/5S/e/A.aurita.1/d.5.e.A.aurita.1.ss.txt
d.5.e.A.aurita.2 5S d 5 e Eukarya   A.aurita.2 5S/e/A.aurita.2 no https://staging.crw2.org/data/5S/e/A.aurita.2/d.5.e.A.aurita.2.pdf https://staging.crw2.org/data/5S/e/A.aurita.2/d.5.e.A.aurita.2.bpseq.txt https://staging.crw2.org/data/5S/e/A.aurita.2/d.5.e.A.aurita.2.ss.txt
d.5.e.A.castellanii 5S d 5 e Eukarya   A.castellanii 5S/e/A.castellanii no https://staging.crw2.org/data/5S/e/A.castellanii/d.5.e.A.castellanii.pdf https://staging.crw2.org/data/5S/e/A.castellanii/d.5.e.A.castellanii.bpseq.txt https://staging.crw2.org/data/5S/e/A.castellanii/d.5.e.A.castellanii.ss.txt
d.5.e.A.domesticus 5S d 5 e Eukarya   A.domesticus 5S/e/A.domesticus no https://staging.crw2.org/data/5S/e/A.domesticus/d.5.e.A.domesticus.pdf https://staging.crw2.org/data/5S/e/A.domesticus/d.5.e.A.domesticus.bpseq.txt https://staging.crw2.org/data/5S/e/A.domesticus/d.5.e.A.domesticus.ss.txt
d.5.e.A.equina 5S d 5 e Eukarya   A.equina 5S/e/A.equina no https://staging.crw2.org/data/5S/e/A.equina/d.5.e.A.equina.pdf https://staging.crw2.org/data/5S/e/A.equina/d.5.e.A.equina.bpseq.txt https://staging.crw2.org/data/5S/e/A.equina/d.5.e.A.equina.ss.txt
d.5.e.A.immersus.1 5S d 5 e Eukarya   A.immersus.1 5S/e/A.immersus.1 no https://staging.crw2.org/data/5S/e/A.immersus.1/d.5.e.A.immersus.1.pdf https://staging.crw2.org/data/5S/e/A.immersus.1/d.5.e.A.immersus.1.bpseq.txt https://staging.crw2.org/data/5S/e/A.immersus.1/d.5.e.A.immersus.1.ss.txt
d.5.e.A.magnoliae 5S d 5 e Eukarya   A.magnoliae 5S/e/A.magnoliae no https://staging.crw2.org/data/5S/e/A.magnoliae/d.5.e.A.magnoliae.pdf https://staging.crw2.org/data/5S/e/A.magnoliae/d.5.e.A.magnoliae.bpseq.txt https://staging.crw2.org/data/5S/e/A.magnoliae/d.5.e.A.magnoliae.ss.txt
d.5.e.A.parasiticum 5S d 5 e Eukarya   A.parasiticum 5S/e/A.parasiticum no https://staging.crw2.org/data/5S/e/A.parasiticum/d.5.e.A.parasiticum.pdf https://staging.crw2.org/data/5S/e/A.parasiticum/d.5.e.A.parasiticum.bpseq.txt https://staging.crw2.org/data/5S/e/A.parasiticum/d.5.e.A.parasiticum.ss.txt
d.5.e.A.pectinifera 5S d 5 e Eukarya   A.pectinifera 5S/e/A.pectinifera no https://staging.crw2.org/data/5S/e/A.pectinifera/d.5.e.A.pectinifera.pdf https://staging.crw2.org/data/5S/e/A.pectinifera/d.5.e.A.pectinifera.bpseq.txt https://staging.crw2.org/data/5S/e/A.pectinifera/d.5.e.A.pectinifera.ss.txt
d.5.e.A.pernyi 5S d 5 e Eukarya   A.pernyi 5S/e/A.pernyi no https://staging.crw2.org/data/5S/e/A.pernyi/d.5.e.A.pernyi.pdf https://staging.crw2.org/data/5S/e/A.pernyi/d.5.e.A.pernyi.bpseq.txt https://staging.crw2.org/data/5S/e/A.pernyi/d.5.e.A.pernyi.ss.txt
d.5.e.A.salina 5S d 5 e Eukarya   A.salina 5S/e/A.salina no https://staging.crw2.org/data/5S/e/A.salina/d.5.e.A.salina.pdf https://staging.crw2.org/data/5S/e/A.salina/d.5.e.A.salina.bpseq.txt https://staging.crw2.org/data/5S/e/A.salina/d.5.e.A.salina.ss.txt
d.5.e.A.tabira 5S d 5 e Eukarya   A.tabira 5S/e/A.tabira no https://staging.crw2.org/data/5S/e/A.tabira/d.5.e.A.tabira.pdf https://staging.crw2.org/data/5S/e/A.tabira/d.5.e.A.tabira.bpseq.txt https://staging.crw2.org/data/5S/e/A.tabira/d.5.e.A.tabira.ss.txt
d.5.e.A.vulgaris 5S d 5 e Eukarya   A.vulgaris 5S/e/A.vulgaris no https://staging.crw2.org/data/5S/e/A.vulgaris/d.5.e.A.vulgaris.pdf https://staging.crw2.org/data/5S/e/A.vulgaris/d.5.e.A.vulgaris.bpseq.txt https://staging.crw2.org/data/5S/e/A.vulgaris/d.5.e.A.vulgaris.ss.txt
d.5.e.B.belcheri 5S d 5 e Eukarya   B.belcheri 5S/e/B.belcheri no https://staging.crw2.org/data/5S/e/B.belcheri/d.5.e.B.belcheri.pdf https://staging.crw2.org/data/5S/e/B.belcheri/d.5.e.B.belcheri.bpseq.txt https://staging.crw2.org/data/5S/e/B.belcheri/d.5.e.B.belcheri.ss.txt
d.5.e.B.japonicum 5S d 5 e Eukarya   B.japonicum 5S/e/B.japonicum no https://staging.crw2.org/data/5S/e/B.japonicum/d.5.e.B.japonicum.pdf https://staging.crw2.org/data/5S/e/B.japonicum/d.5.e.B.japonicum.bpseq.txt https://staging.crw2.org/data/5S/e/B.japonicum/d.5.e.B.japonicum.ss.txt
d.5.e.B.napus 5S d 5 e Eukarya   B.napus 5S/e/B.napus no https://staging.crw2.org/data/5S/e/B.napus/d.5.e.B.napus.pdf https://staging.crw2.org/data/5S/e/B.napus/d.5.e.B.napus.bpseq.txt https://staging.crw2.org/data/5S/e/B.napus/d.5.e.B.napus.ss.txt
d.5.e.B.neritina 5S d 5 e Eukarya   B.neritina 5S/e/B.neritina no https://staging.crw2.org/data/5S/e/B.neritina/d.5.e.B.neritina.pdf https://staging.crw2.org/data/5S/e/B.neritina/d.5.e.B.neritina.bpseq.txt https://staging.crw2.org/data/5S/e/B.neritina/d.5.e.B.neritina.ss.txt
d.5.e.B.plicatilis 5S d 5 e Eukarya   B.plicatilis 5S/e/B.plicatilis no https://staging.crw2.org/data/5S/e/B.plicatilis/d.5.e.B.plicatilis.pdf https://staging.crw2.org/data/5S/e/B.plicatilis/d.5.e.B.plicatilis.bpseq.txt https://staging.crw2.org/data/5S/e/B.plicatilis/d.5.e.B.plicatilis.ss.txt
d.5.e.B.simplex 5S d 5 e Eukarya   B.simplex 5S/e/B.simplex no https://staging.crw2.org/data/5S/e/B.simplex/d.5.e.B.simplex.pdf https://staging.crw2.org/data/5S/e/B.simplex/d.5.e.B.simplex.bpseq.txt https://staging.crw2.org/data/5S/e/B.simplex/d.5.e.B.simplex.ss.txt
d.5.e.B.taurus 5S d 5 e Eukarya   B.taurus 5S/e/B.taurus no https://staging.crw2.org/data/5S/e/B.taurus/d.5.e.B.taurus.pdf https://staging.crw2.org/data/5S/e/B.taurus/d.5.e.B.taurus.bpseq.txt https://staging.crw2.org/data/5S/e/B.taurus/d.5.e.B.taurus.ss.txt
d.5.e.B.vorax 5S d 5 e Eukarya   B.vorax 5S/e/B.vorax no https://staging.crw2.org/data/5S/e/B.vorax/d.5.e.B.vorax.pdf https://staging.crw2.org/data/5S/e/B.vorax/d.5.e.B.vorax.bpseq.txt https://staging.crw2.org/data/5S/e/B.vorax/d.5.e.B.vorax.ss.txt
d.5.e.B.vulgaris 5S d 5 e Eukarya   B.vulgaris 5S/e/B.vulgaris no https://staging.crw2.org/data/5S/e/B.vulgaris/d.5.e.B.vulgaris.pdf https://staging.crw2.org/data/5S/e/B.vulgaris/d.5.e.B.vulgaris.bpseq.txt https://staging.crw2.org/data/5S/e/B.vulgaris/d.5.e.B.vulgaris.ss.txt
d.5.e.C.albicans 5S d 5 e Eukarya   C.albicans 5S/e/C.albicans no https://staging.crw2.org/data/5S/e/C.albicans/d.5.e.C.albicans.pdf https://staging.crw2.org/data/5S/e/C.albicans/d.5.e.C.albicans.bpseq.txt https://staging.crw2.org/data/5S/e/C.albicans/d.5.e.C.albicans.ss.txt
d.5.e.C.carpio 5S d 5 e Eukarya   C.carpio 5S/e/C.carpio no https://staging.crw2.org/data/5S/e/C.carpio/d.5.e.C.carpio.pdf https://staging.crw2.org/data/5S/e/C.carpio/d.5.e.C.carpio.bpseq.txt https://staging.crw2.org/data/5S/e/C.carpio/d.5.e.C.carpio.ss.txt
d.5.e.C.cohnii 5S d 5 e Eukarya   C.cohnii 5S/e/C.cohnii no https://staging.crw2.org/data/5S/e/C.cohnii/d.5.e.C.cohnii.pdf https://staging.crw2.org/data/5S/e/C.cohnii/d.5.e.C.cohnii.bpseq.txt https://staging.crw2.org/data/5S/e/C.cohnii/d.5.e.C.cohnii.ss.txt
d.5.e.C.edule 5S d 5 e Eukarya   C.edule 5S/e/C.edule no https://staging.crw2.org/data/5S/e/C.edule/d.5.e.C.edule.pdf https://staging.crw2.org/data/5S/e/C.edule/d.5.e.C.edule.bpseq.txt https://staging.crw2.org/data/5S/e/C.edule/d.5.e.C.edule.ss.txt
d.5.e.C.elegans.1 5S d 5 e Eukarya   C.elegans.1 5S/e/C.elegans.1 no https://staging.crw2.org/data/5S/e/C.elegans.1/d.5.e.C.elegans.1.pdf https://staging.crw2.org/data/5S/e/C.elegans.1/d.5.e.C.elegans.1.bpseq.txt https://staging.crw2.org/data/5S/e/C.elegans.1/d.5.e.C.elegans.1.ss.txt
d.5.e.C.elegans.2 5S d 5 e Eukarya   C.elegans.2 5S/e/C.elegans.2 no https://staging.crw2.org/data/5S/e/C.elegans.2/d.5.e.C.elegans.2.pdf https://staging.crw2.org/data/5S/e/C.elegans.2/d.5.e.C.elegans.2.bpseq.txt https://staging.crw2.org/data/5S/e/C.elegans.2/d.5.e.C.elegans.2.ss.txt
d.5.e.C.fasciculata 5S d 5 e Eukarya   C.fasciculata 5S/e/C.fasciculata no https://staging.crw2.org/data/5S/e/C.fasciculata/d.5.e.C.fasciculata.pdf https://staging.crw2.org/data/5S/e/C.fasciculata/d.5.e.C.fasciculata.bpseq.txt https://staging.crw2.org/data/5S/e/C.fasciculata/d.5.e.C.fasciculata.ss.txt
d.5.e.C.pallida 5S d 5 e Eukarya   C.pallida 5S/e/C.pallida no https://staging.crw2.org/data/5S/e/C.pallida/d.5.e.C.pallida.pdf https://staging.crw2.org/data/5S/e/C.pallida/d.5.e.C.pallida.bpseq.txt https://staging.crw2.org/data/5S/e/C.pallida/d.5.e.C.pallida.ss.txt
d.5.e.C.paradoxa 5S d 5 e Eukarya   C.paradoxa 5S/e/C.paradoxa no https://staging.crw2.org/data/5S/e/C.paradoxa/d.5.e.C.paradoxa.pdf https://staging.crw2.org/data/5S/e/C.paradoxa/d.5.e.C.paradoxa.bpseq.txt https://staging.crw2.org/data/5S/e/C.paradoxa/d.5.e.C.paradoxa.ss.txt
d.5.e.C.paramecium 5S d 5 e Eukarya   C.paramecium 5S/e/C.paramecium no https://staging.crw2.org/data/5S/e/C.paramecium/d.5.e.C.paramecium.pdf https://staging.crw2.org/data/5S/e/C.paramecium/d.5.e.C.paramecium.bpseq.txt https://staging.crw2.org/data/5S/e/C.paramecium/d.5.e.C.paramecium.ss.txt
d.5.e.C.quinquecirrha 5S d 5 e Eukarya   C.quinquecirrha 5S/e/C.quinquecirrha no https://staging.crw2.org/data/5S/e/C.quinquecirrha/d.5.e.C.quinquecirrha.pdf https://staging.crw2.org/data/5S/e/C.quinquecirrha/d.5.e.C.quinquecirrha.bpseq.txt https://staging.crw2.org/data/5S/e/C.quinquecirrha/d.5.e.C.quinquecirrha.ss.txt
d.5.e.C.reinhardtii.1 5S d 5 e Eukarya   C.reinhardtii.1 5S/e/C.reinhardtii.1 no https://staging.crw2.org/data/5S/e/C.reinhardtii.1/d.5.e.C.reinhardtii.1.pdf https://staging.crw2.org/data/5S/e/C.reinhardtii.1/d.5.e.C.reinhardtii.1.bpseq.txt https://staging.crw2.org/data/5S/e/C.reinhardtii.1/d.5.e.C.reinhardtii.1.ss.txt
d.5.e.C.revoluta 5S d 5 e Eukarya   C.revoluta 5S/e/C.revoluta no https://staging.crw2.org/data/5S/e/C.revoluta/d.5.e.C.revoluta.pdf https://staging.crw2.org/data/5S/e/C.revoluta/d.5.e.C.revoluta.bpseq.txt https://staging.crw2.org/data/5S/e/C.revoluta/d.5.e.C.revoluta.ss.txt
d.5.e.C.vicina 5S d 5 e Eukarya   C.vicina 5S/e/C.vicina no https://staging.crw2.org/data/5S/e/C.vicina/d.5.e.C.vicina.pdf https://staging.crw2.org/data/5S/e/C.vicina/d.5.e.C.vicina.bpseq.txt https://staging.crw2.org/data/5S/e/C.vicina/d.5.e.C.vicina.ss.txt
d.5.e.D.discoideum 5S d 5 e Eukarya   D.discoideum 5S/e/D.discoideum no https://staging.crw2.org/data/5S/e/D.discoideum/d.5.e.D.discoideum.pdf https://staging.crw2.org/data/5S/e/D.discoideum/d.5.e.D.discoideum.bpseq.txt https://staging.crw2.org/data/5S/e/D.discoideum/d.5.e.D.discoideum.ss.txt
d.5.e.D.japonica 5S d 5 e Eukarya   D.japonica 5S/e/D.japonica no https://staging.crw2.org/data/5S/e/D.japonica/d.5.e.D.japonica.pdf https://staging.crw2.org/data/5S/e/D.japonica/d.5.e.D.japonica.bpseq.txt https://staging.crw2.org/data/5S/e/D.japonica/d.5.e.D.japonica.ss.txt
d.5.e.D.mauritiana 5S d 5 e Eukarya   D.mauritiana 5S/e/D.mauritiana no https://staging.crw2.org/data/5S/e/D.mauritiana/d.5.e.D.mauritiana.pdf https://staging.crw2.org/data/5S/e/D.mauritiana/d.5.e.D.mauritiana.bpseq.txt https://staging.crw2.org/data/5S/e/D.mauritiana/d.5.e.D.mauritiana.ss.txt
d.5.e.D.melanogaster.1 5S d 5 e Eukarya   D.melanogaster.1 5S/e/D.melanogaster.1 no https://staging.crw2.org/data/5S/e/D.melanogaster.1/d.5.e.D.melanogaster.1.pdf https://staging.crw2.org/data/5S/e/D.melanogaster.1/d.5.e.D.melanogaster.1.bpseq.txt https://staging.crw2.org/data/5S/e/D.melanogaster.1/d.5.e.D.melanogaster.1.ss.txt
d.5.e.D.melanogaster.2 5S d 5 e Eukarya   D.melanogaster.2 5S/e/D.melanogaster.2 no https://staging.crw2.org/data/5S/e/D.melanogaster.2/d.5.e.D.melanogaster.2.pdf https://staging.crw2.org/data/5S/e/D.melanogaster.2/d.5.e.D.melanogaster.2.bpseq.txt https://staging.crw2.org/data/5S/e/D.melanogaster.2/d.5.e.D.melanogaster.2.ss.txt
d.5.e.D.tenue 5S d 5 e Eukarya   D.tenue 5S/e/D.tenue no https://staging.crw2.org/data/5S/e/D.tenue/d.5.e.D.tenue.pdf https://staging.crw2.org/data/5S/e/D.tenue/d.5.e.D.tenue.bpseq.txt https://staging.crw2.org/data/5S/e/D.tenue/d.5.e.D.tenue.ss.txt
d.5.e.E.albidus 5S d 5 e Eukarya   E.albidus 5S/e/E.albidus no https://staging.crw2.org/data/5S/e/E.albidus/d.5.e.E.albidus.pdf https://staging.crw2.org/data/5S/e/E.albidus/d.5.e.E.albidus.bpseq.txt https://staging.crw2.org/data/5S/e/E.albidus/d.5.e.E.albidus.ss.txt
d.5.e.E.arvense 5S d 5 e Eukarya   E.arvense 5S/e/E.arvense no https://staging.crw2.org/data/5S/e/E.arvense/d.5.e.E.arvense.pdf https://staging.crw2.org/data/5S/e/E.arvense/d.5.e.E.arvense.bpseq.txt https://staging.crw2.org/data/5S/e/E.arvense/d.5.e.E.arvense.ss.txt
d.5.e.E.eurystomus 5S d 5 e Eukarya   E.eurystomus 5S/e/E.eurystomus no https://staging.crw2.org/data/5S/e/E.eurystomus/d.5.e.E.eurystomus.pdf https://staging.crw2.org/data/5S/e/E.eurystomus/d.5.e.E.eurystomus.bpseq.txt https://staging.crw2.org/data/5S/e/E.eurystomus/d.5.e.E.eurystomus.ss.txt
d.5.e.E.gracile.1 5S d 5 e Eukarya   E.gracile.1 5S/e/E.gracile.1 no https://staging.crw2.org/data/5S/e/E.gracile.1/d.5.e.E.gracile.1.pdf https://staging.crw2.org/data/5S/e/E.gracile.1/d.5.e.E.gracile.1.bpseq.txt https://staging.crw2.org/data/5S/e/E.gracile.1/d.5.e.E.gracile.1.ss.txt
d.5.e.E.gracilis.1 5S d 5 e Eukarya   E.gracilis.1 5S/e/E.gracilis.1 no https://staging.crw2.org/data/5S/e/E.gracilis.1/d.5.e.E.gracilis.1.pdf https://staging.crw2.org/data/5S/e/E.gracilis.1/d.5.e.E.gracilis.1.bpseq.txt https://staging.crw2.org/data/5S/e/E.gracilis.1/d.5.e.E.gracilis.1.ss.txt
d.5.e.E.gracilis.2 5S d 5 e Eukarya   E.gracilis.2 5S/e/E.gracilis.2 no https://staging.crw2.org/data/5S/e/E.gracilis.2/d.5.e.E.gracilis.2.pdf https://staging.crw2.org/data/5S/e/E.gracilis.2/d.5.e.E.gracilis.2.bpseq.txt https://staging.crw2.org/data/5S/e/E.gracilis.2/d.5.e.E.gracilis.2.ss.txt
d.5.e.E.kokanica 5S d 5 e Eukarya   E.kokanica 5S/e/E.kokanica no https://staging.crw2.org/data/5S/e/E.kokanica/d.5.e.E.kokanica.pdf https://staging.crw2.org/data/5S/e/E.kokanica/d.5.e.E.kokanica.bpseq.txt https://staging.crw2.org/data/5S/e/E.kokanica/d.5.e.E.kokanica.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);